Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Reverse (-)

2730450 .. 2733156

Gene Structure 2707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG016500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGAGTCAAGTGAGGCAGGCACCATGGACGAAGAGGTTTTGAAGCTCAAAGAGAAGCTTTCTCAATGCGAACTCCAAAGGGAGCTGCTCCTGACAGAGAAAGAGAGCTGGATGGTCAACGAGAGACTTGTCATGCGGGAAAAAGAAGAAGCAGAAGAAAAGCTCAGAGTTTTTATAGAAGCGACTTCGAGTGCAAGATCTGAATTTGACAAAAAAAGAAAGACACTCAAGGAGGCCTTGGAGACCAAGAAGAAGAGCGTGCATCAGTTAAATAAGGCAATCGATGAGTTTCTTGCTCGTCCTGATGTGAATTATATGGGAAAACGAACACCCGCCGTGGAGAAGTTTGATAGATTGATTGCCGAAATACGAAAGAAAAAAATGTGCTTACAAGCAGAGACAGATAAGGTGGACAAGCTACATTCAGATATATGGGAGAAACGGGACAATTTATTTTCTTTTCTTAAGACTTGTGTGAAAAATTCAGAAATCACTGATGATGTAAAACCTGTGCTCCGACTCCACTATGATGCATATGTTGACACACTCAAGACTGACGATGATGATTGTGAAATGTTAAGAAAGTATGTGCATTTTATTCTGCAACCGTTTGTCAGGCTTGACTTTAAATCACCAATTTCCGCTGCAATGTCAAAATTTTTCAACTTCTTTCTAACAAAGGAGTCCAATGGTTCTCGTATCTACAACGCAGATTCTACCAACAAAGATCCTGAGCCTGGGAACAGCCTTTGGAAACGCAAAGCTGATGCTGCTTTCATGCATTGCACGACTATGAAATCATTTTTTGAGGAAACACTAATAGCAATTCCAGACTTTGTCTTGGATGCACCTGTTGGAGCGCCACCATCTGGTAGTAATGATCCTTTTGCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dus

Protein Analysis

298

Amino Acids

34.5

Weight (kDa)

5.9

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	20
AccB7I	CCANNNNNTGG	1 cut(s)	869
AciI	CCGC	3 cut(s)	136, 333, 642
AclWI	GGATC	2 cut(s)	722, 875
AcsI	RAATTY	3 cut(s)	203, 481, 656
AfiI	CCNNNNNNNGG	2 cut(s)	737, 869
AflII	CTTAAG	1 cut(s)	464
AgsI	TTSAA	2 cut(s)	43, 664
AjnI	CCWGG	1 cut(s)	736
AluBI	AGCT	7 cut(s)	46, 58, 85, 108, 163, 418, 764
AluI	AGCT	7 cut(s)	46, 58, 85, 108, 163, 418, 764
Alw21I	GWGCWC	1 cut(s)	516
Alw26I	GTCTC	3 cut(s)	118, 236, 392
AlwI	GGATC	2 cut(s)	722, 875
AoxI	GGCC	1 cut(s)	234
ApeKI	GCWGC	3 cut(s)	85, 644, 770
ApoI	RAATTY	3 cut(s)	203, 481, 656
AspLEI	GCGC	1 cut(s)	862
AsuHPI	GGTGA	1 cut(s)	624
BanI	GGYRCC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	516
BbvI	GCAGC	3 cut(s)	72, 631, 757
BccI	CCATC	2 cut(s)	106, 874
BceAI	ACGGC	1 cut(s)	320
BciT130I	CCWGG	1 cut(s)	738
BcoDI	GTCTC	3 cut(s)	118, 236, 392
BfoI	RGCGCY	1 cut(s)	863
BfrI	CTTAAG	1 cut(s)	464
BglII	AGATCT	1 cut(s)	197
BisI	GCNGC	3 cut(s)	86, 645, 771
BlsI	GCNGC	3 cut(s)	87, 646, 772
Bme1390I	CCNGG	1 cut(s)	738
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	738
BmsI	GCATC	4 cut(s)	271, 520, 757, 835
Bpu10I	CCTNAGC	1 cut(s)	732
BpuEI	CTTGAG	2 cut(s)	212, 533
Bsa29I	ATCGAT	1 cut(s)	282
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	4 cut(s)	24, 237, 336, 737
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	2 cut(s)	737, 869
Bse3DI	GCAATG	2 cut(s)	654, 781
BseBI	CCWGG	1 cut(s)	738
BseCI	ATCGAT	1 cut(s)	282
BseDI	CCNNGG	4 cut(s)	24, 237, 336, 737
BseGI	GGATG	2 cut(s)	117, 850
BseLI	CCNNNNNNNGG	2 cut(s)	737, 869
BseMI	GCAATG	2 cut(s)	654, 781
BseMII	CTCAG	2 cut(s)	178, 723
BseXI	GCAGC	3 cut(s)	72, 631, 757
BshFI	GGCC	1 cut(s)	236
BshNI	GGYRCC	1 cut(s)	20
BshVI	ATCGAT	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	516
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	2 cut(s)	737, 869
BsmAI	GTCTC	3 cut(s)	118, 236, 392
BsmFI	GGGAC	1 cut(s)	458
BsnI	GGCC	1 cut(s)	236
Bso31I	GGTCTC	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp143I	GATC	3 cut(s)	197, 727, 880
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	3 cut(s)	136, 333, 642
BspANI	GGCC	1 cut(s)	236
BspCNI	CTCAG	2 cut(s)	177, 724
BspDI	ATCGAT	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	22
BspPI	GGATC	2 cut(s)	722, 875
BspQI	GCTCTTC	1 cut(s)	248
BspT107I	GGYRCC	1 cut(s)	20
BspTI	CTTAAG	1 cut(s)	464
BspTNI	GGTCTC	1 cut(s)	236
BsrDI	GCAATG	2 cut(s)	654, 781
BssECI	CCNNGG	4 cut(s)	24, 237, 336, 737
BssMI	GATC	3 cut(s)	197, 727, 880
BssT1I	CCWWGG	2 cut(s)	24, 237
Bst2UI	CCWGG	1 cut(s)	738
Bst4CI	ACNGT	1 cut(s)	609
Bst6I	CTCTTC	2 cut(s)	27, 248
BstAFI	CTTAAG	1 cut(s)	464
BstC8I	GCNNGC	2 cut(s)	19, 260
BstDEI	CTNAG	2 cut(s)	164, 732
BstDSI	CCRYGG	2 cut(s)	24, 336
BstF5I	GGATG	2 cut(s)	117, 850
BstH2I	RGCGCY	1 cut(s)	863
BstHHI	GCGC	1 cut(s)	862
BstKTI	GATC	3 cut(s)	200, 730, 883
BstMAI	GTCTC	3 cut(s)	118, 236, 392
BstMBI	GATC	3 cut(s)	197, 727, 880
BstMWI	GCNNNNNNNGC	1 cut(s)	770
BstNI	CCWGG	1 cut(s)	738
BstSCI	CCNGG	1 cut(s)	736
BstV1I	GCAGC	3 cut(s)	72, 631, 757
BstX2I	RGATCY	2 cut(s)	197, 727
BstYI	RGATCY	2 cut(s)	197, 727
Bsu15I	ATCGAT	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	236
BsuTUI	ATCGAT	1 cut(s)	282
BtgI	CCRYGG	2 cut(s)	24, 336
BtsCI	GGATG	2 cut(s)	117, 850
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	2 cut(s)	19, 260
CfoI	GCGC	1 cut(s)	862
ClaI	ATCGAT	1 cut(s)	282
CviAII	CATG	3 cut(s)	25, 133, 778
DdeI	CTNAG	2 cut(s)	164, 732
DpnI	GATC	3 cut(s)	199, 729, 882
DpnII	GATC	3 cut(s)	197, 727, 880
DraI	TTTAAA	1 cut(s)	628
Eam1104I	CTCTTC	2 cut(s)	27, 248
EarI	CTCTTC	2 cut(s)	27, 248
Eco130I	CCWWGG	2 cut(s)	24, 237
Eco147I	AGGCCT	1 cut(s)	236
Eco31I	GGTCTC	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	736
EcoT14I	CCWWGG	2 cut(s)	24, 237
EcoT22I	ATGCAT	2 cut(s)	535, 783
ErhI	CCWWGG	2 cut(s)	24, 237
FaeI	CATG	3 cut(s)	28, 136, 781
FalI	AAGNNNNNCTT	4 cut(s)	42, 74, 221, 253
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	3 cut(s)	24, 132, 777
FauI	CCCGC	2 cut(s)	129, 340
FauNDI	CATATG	1 cut(s)	535
Fnu4HI	GCNGC	3 cut(s)	86, 645, 771
FokI	GGATG	2 cut(s)	124, 857
Fsp4HI	GCNGC	3 cut(s)	86, 645, 771
GlaI	GCGC	1 cut(s)	861
GluI	GCNGC	3 cut(s)	86, 645, 771
HaeII	RGCGCY	1 cut(s)	863
HaeIII	GGCC	1 cut(s)	236
HhaI	GCGC	1 cut(s)	862
Hin1II	CATG	3 cut(s)	28, 136, 781
Hin6I	GCGC	1 cut(s)	860
HinP1I	GCGC	1 cut(s)	860
HincII	GTYRAC	2 cut(s)	118, 541
HindII	GTYRAC	2 cut(s)	118, 541
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	4 cut(s)	5, 519, 683, 713
HphI	GGTGA	1 cut(s)	624
Hpy166II	GTNNAC	3 cut(s)	118, 412, 541
Hpy188I	TCNGA	5 cut(s)	167, 202, 427, 487, 518
Hpy188III	TCNNGA	5 cut(s)	91, 302, 550, 731, 830
Hpy8I	GTNNAC	3 cut(s)	118, 412, 541
HpyCH4III	ACNGT	1 cut(s)	609
HpyF10VI	GCNNNNNNNGC	1 cut(s)	770
HpyF3I	CTNAG	2 cut(s)	164, 732
Hsp92II	CATG	3 cut(s)	28, 136, 781
HspAI	GCGC	1 cut(s)	860
Kzo9I	GATC	3 cut(s)	197, 727, 880
LguI	GCTCTTC	1 cut(s)	248
LmnI	GCTCC	4 cut(s)	82, 93, 519, 857
Lsp1109I	GCAGC	3 cut(s)	72, 631, 757
LweI	GCATC	4 cut(s)	271, 520, 757, 835
MalI	GATC	3 cut(s)	199, 729, 882
MboI	GATC	3 cut(s)	197, 727, 880
MboII	GAAGA	5 cut(s)	44, 158, 167, 262, 265
MflI	RGATCY	2 cut(s)	197, 727
MhlI	GDGCHC	1 cut(s)	516
MluCI	AATT	8 cut(s)	203, 310, 448, 481, 636, 656, 825, 892
MlyI	GAGTC	3 cut(s)	14, 513, 692
MmeI	TCCRAC	2 cut(s)	541, 835
MnlI	CCTC	4 cut(s)	7, 28, 226, 802
Mph1103I	ATGCAT	2 cut(s)	535, 783
MseI	TTAA	5 cut(s)	269, 465, 578, 627, 895
MslI	CAYNNNNRTG	2 cut(s)	528, 791
MspA1I	CMGCKG	1 cut(s)	644
MspCI	CTTAAG	1 cut(s)	464
MspR9I	CCNGG	1 cut(s)	738
MvaI	CCWGG	1 cut(s)	738
MwoI	GCNNNNNNNGC	1 cut(s)	770
NcoI	CCATGG	1 cut(s)	24
NdeI	CATATG	1 cut(s)	535
NdeII	GATC	3 cut(s)	197, 727, 880
NlaIII	CATG	3 cut(s)	28, 136, 781
NlaIV	GGNNCC	1 cut(s)	22
NsiI	ATGCAT	2 cut(s)	535, 783
PceI	AGGCCT	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	713
PflFI	GACNNNGTC	1 cut(s)	836
PflMI	CCANNNNNTGG	1 cut(s)	869
PkrI	GCNGC	3 cut(s)	87, 646, 772
PleI	GAGTC	3 cut(s)	13, 513, 691
PpsI	GAGTC	3 cut(s)	13, 513, 691
Psp6I	CCWGG	1 cut(s)	736
PspGI	CCWGG	1 cut(s)	736
PspN4I	GGNNCC	1 cut(s)	22
PsuI	RGATCY	2 cut(s)	197, 727
PsyI	GACNNNGTC	1 cut(s)	836
RseI	CAYNNNNRTG	2 cut(s)	528, 791
SapI	GCTCTTC	1 cut(s)	248
SaqAI	TTAA	5 cut(s)	269, 465, 578, 627, 895
SatI	GCNGC	3 cut(s)	86, 645, 771
Sau3AI	GATC	3 cut(s)	197, 727, 880
SchI	GAGTC	3 cut(s)	14, 513, 692
ScrFI	CCNGG	1 cut(s)	738
SduI	GDGCHC	1 cut(s)	516
SfaNI	GCATC	4 cut(s)	271, 520, 757, 835
SmiMI	CAYNNNNRTG	2 cut(s)	528, 791
SmlI	CTYRAG	3 cut(s)	227, 464, 548
SmoI	CTYRAG	3 cut(s)	227, 464, 548
Sse9I	AATT	8 cut(s)	203, 310, 448, 481, 636, 656, 825, 892
SseBI	AGGCCT	1 cut(s)	236
SsiI	CCGC	3 cut(s)	136, 333, 642
StuI	AGGCCT	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	736
StyI	CCWWGG	2 cut(s)	24, 237
TaaI	ACNGT	1 cut(s)	609
TaqI	TCGA	2 cut(s)	188, 282
TasI	AATT	8 cut(s)	203, 310, 448, 481, 636, 656, 825, 892
TfiI	GAWTC	1 cut(s)	713
Tru1I	TTAA	5 cut(s)	269, 465, 578, 627, 895
Tru9I	TTAA	5 cut(s)	269, 465, 578, 627, 895
TscAI	CASTG	1 cut(s)	499
TseI	GCWGC	3 cut(s)	85, 644, 770
TspDTI	ATGAA	2 cut(s)	766, 809
TspRI	CASTG	1 cut(s)	499
Tth111I	GACNNNGTC	1 cut(s)	836
Van91I	CCANNNNNTGG	1 cut(s)	869
Vha464I	CTTAAG	1 cut(s)	464
XapI	RAATTY	3 cut(s)	203, 481, 656
Zsp2I	ATGCAT	2 cut(s)	535, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.