Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006790.1

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Reverse (-)

75109 .. 76391

Gene Structure 1283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006790.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

atgtcaagtgaggcaggcaccatggacgacgaaaaggttttgaagctcaaagagaagctttctgaacgccgactccaaaggaagcagctcttgaaagagagagagatatggaggatcaaggagcggaaaataaaagaactacaagaagaactcagagttgaaatagaagcgaattcgcgtgcgacttctgaatttgaagaaaaaaagaagacactcaaggaggccttgcaggccaagaggcagagtgtcaagaaggcattggatgaatttaatgctaaccgagatcgtgaattcccttataagggagcacaaacagccaatgccagtgacaggtttgatagattgcatgctgaattagaaaagaaaattaagtggtcacaagcagagagagataatctggacaagctacagtcaaagatagatgagaaatgggacaatttaattgattttcttgagacttgtcggaaaaattcaaaaatcactaatgatgtgaagccttgcctccgagtccactatgatgcatacattaaaacactcaagactgacgatgatgattgtaaaatgttaaaaaagtatgtgcattttgttctacaaccgagttctgctcagaagcaaaatgagatgtttgccggggttgattttatatttccaatttctgctgcaatatcaaaaatttttaacttcttcataggaaaagagacgaagtccaatagttctcttatatataacagaagctctaccgacagagatcctaagctgacttctgatgtgccttttcttttactggtgaagcgtaaacatcctgtaggaggaagagtggacaacgagtctgaacatcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

280

Amino Acids

32.86

Weight (kDa)

9.22

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	300
AccB1I	GGYRCC	1 cut(s)	17
AccBSI	CCGCTC	1 cut(s)	124
AccII	CGCG	1 cut(s)	178
AciI	CCGC	1 cut(s)	124
AclWI	GGATC	2 cut(s)	122, 743
AcsI	RAATTY	6 cut(s)	172, 191, 266, 290, 469, 672
AfiI	CCNNNNNNNGG	4 cut(s)	301, 302, 330, 809
AgsI	TTSAA	5 cut(s)	43, 94, 161, 197, 474
AhdI	GACNNNNNGTC	1 cut(s)	826
AloI	GAACNNNNNNTCC	2 cut(s)	57, 89
AluBI	AGCT	6 cut(s)	46, 58, 88, 406, 735, 757
AluI	AGCT	6 cut(s)	46, 58, 88, 406, 735, 757
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	2 cut(s)	449, 692
AlwI	GGATC	2 cut(s)	122, 743
AoxI	GGCC	2 cut(s)	222, 231
ApeKI	GCWGC	2 cut(s)	85, 659
ApoI	RAATTY	6 cut(s)	172, 191, 266, 290, 469, 672
AsuC2I	CCSGG	1 cut(s)	631
AsuHPI	GGTGA	1 cut(s)	799
BanI	GGYRCC	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	2 cut(s)	97, 646
BcnI	CCSGG	1 cut(s)	631
BcoDI	GTCTC	2 cut(s)	449, 692
BfmI	CTRYAG	2 cut(s)	407, 804
BglI	GCCNNNNNGGC	1 cut(s)	230
BisI	GCNGC	2 cut(s)	86, 660
BlsI	GCNGC	2 cut(s)	87, 661
Bme1390I	CCNGG	1 cut(s)	631
BmeRI	GACNNNNNGTC	1 cut(s)	826
BmiI	GGNNCC	1 cut(s)	19
BmrFI	CCNGG	1 cut(s)	631
BmsI	GCATC	1 cut(s)	508
BpiI	GAAGAC	1 cut(s)	215
BplI	GAGNNNNNCTC	2 cut(s)	589, 621
Bpu10I	CCTNAGC	1 cut(s)	753
BpuEI	CTTGAG	3 cut(s)	200, 473, 521
BpuMI	CCSGG	1 cut(s)	631
BsaJI	CCNNGG	2 cut(s)	21, 630
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 801, 831
Bsc4I	CCNNNNNNNGG	4 cut(s)	301, 302, 330, 809
Bse1I	ACTGG	2 cut(s)	324, 789
BseDI	CCNNGG	2 cut(s)	21, 630
BseGI	GGATG	2 cut(s)	268, 799
BseLI	CCNNNNNNNGG	4 cut(s)	301, 302, 330, 809
BseMII	CTCAG	2 cut(s)	166, 620
BseNI	ACTGG	2 cut(s)	324, 789
BseXI	GCAGC	2 cut(s)	97, 646
Bsh1236I	CGCG	1 cut(s)	178
BshFI	GGCC	2 cut(s)	224, 233
BshNI	GGYRCC	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	630
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	4 cut(s)	301, 302, 330, 809
BsmAI	GTCTC	2 cut(s)	449, 692
BsmBI	CGTCTC	1 cut(s)	692
BsmFI	GGGAC	1 cut(s)	446
BsnI	GGCC	2 cut(s)	224, 233
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	3 cut(s)	114, 283, 748
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	1 cut(s)	124
BspANI	GGCC	2 cut(s)	224, 233
BspCNI	CTCAG	2 cut(s)	165, 619
BspFNI	CGCG	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	19
BspPI	GGATC	2 cut(s)	122, 743
BspT107I	GGYRCC	1 cut(s)	17
BsrBI	CCGCTC	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	324, 789
BssECI	CCNNGG	2 cut(s)	21, 630
BssMI	GATC	3 cut(s)	114, 283, 748
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	411
Bst6I	CTCTTC	1 cut(s)	808
BstC8I	GCNNGC	4 cut(s)	16, 180, 231, 348
BstDEI	CTNAG	3 cut(s)	152, 606, 753
BstDSI	CCRYGG	1 cut(s)	21
BstENI	CCTNNNNNAGG	1 cut(s)	807
BstF5I	GGATG	2 cut(s)	268, 799
BstFNI	CGCG	1 cut(s)	178
BstKTI	GATC	3 cut(s)	117, 286, 751
BstMAI	GTCTC	2 cut(s)	449, 692
BstMBI	GATC	3 cut(s)	114, 283, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 314
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	629
BstSFI	CTRYAG	2 cut(s)	407, 804
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	2 cut(s)	97, 646
BstV2I	GAAGAC	1 cut(s)	215
BstX2I	RGATCY	1 cut(s)	748
BstYI	RGATCY	1 cut(s)	748
BsuRI	GGCC	2 cut(s)	224, 233
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	268, 799
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	4 cut(s)	16, 180, 231, 348
CviAII	CATG	2 cut(s)	22, 347
DdeI	CTNAG	3 cut(s)	152, 606, 753
DpnI	GATC	3 cut(s)	116, 285, 750
DpnII	GATC	3 cut(s)	114, 283, 748
DriI	GACNNNNNGTC	1 cut(s)	826
Eam1104I	CTCTTC	1 cut(s)	808
Eam1105I	GACNNNNNGTC	1 cut(s)	826
EarI	CTCTTC	1 cut(s)	808
Eco130I	CCWWGG	1 cut(s)	21
Eco147I	AGGCCT	1 cut(s)	224
EcoNI	CCTNNNNNAGG	1 cut(s)	807
EcoRI	GAATTC	2 cut(s)	172, 290
EcoT14I	CCWWGG	1 cut(s)	21
EcoT22I	ATGCAT	1 cut(s)	523
ErhI	CCWWGG	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	692
FaeI	CATG	2 cut(s)	25, 350
FalI	AAGNNNNNCTT	6 cut(s)	42, 74, 74, 106, 209, 241
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	2 cut(s)	21, 346
Fnu4HI	GCNGC	2 cut(s)	86, 660
FokI	GGATG	2 cut(s)	275, 786
Fsp4HI	GCNGC	2 cut(s)	86, 660
GluI	GCNGC	2 cut(s)	86, 660
HaeIII	GGCC	2 cut(s)	224, 233
HapII	CCGG	1 cut(s)	630
Hin1II	CATG	2 cut(s)	25, 350
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	3 cut(s)	72, 507, 827
HpaII	CCGG	1 cut(s)	630
HphI	GGTGA	1 cut(s)	799
Hpy166II	GTNNAC	3 cut(s)	511, 797, 820
Hpy188I	TCNGA	8 cut(s)	64, 155, 190, 465, 506, 609, 766, 832
Hpy188III	TCNNGA	6 cut(s)	91, 250, 287, 398, 452, 538
Hpy8I	GTNNAC	3 cut(s)	511, 797, 820
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	1 cut(s)	411
HpyCH4V	TGCA	5 cut(s)	229, 346, 521, 580, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 314
HpyF3I	CTNAG	3 cut(s)	152, 606, 753
Hsp92II	CATG	2 cut(s)	25, 350
Kzo9I	GATC	3 cut(s)	114, 283, 748
LmnI	GCTCC	2 cut(s)	121, 305
LpnPI	CCDG	7 cut(s)	215, 316, 337, 383, 643, 770, 816
Lsp1109I	GCAGC	2 cut(s)	97, 646
LweI	GCATC	1 cut(s)	508
MaeIII	GTNAC	2 cut(s)	326, 375
MalI	GATC	3 cut(s)	116, 285, 750
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	3 cut(s)	114, 283, 748
MboII	GAAGA	5 cut(s)	158, 209, 220, 676, 825
MflI	RGATCY	1 cut(s)	748
MhlI	GDGCHC	1 cut(s)	310
MlyI	GAGTC	3 cut(s)	66, 516, 836
MmeI	TCCRAC	1 cut(s)	443
MnlI	CCTC	6 cut(s)	4, 105, 214, 231, 512, 803
Mph1103I	ATGCAT	1 cut(s)	523
MseI	TTAA	6 cut(s)	270, 369, 440, 528, 566, 678
MslI	CAYNNNNRTG	1 cut(s)	516
MspI	CCGG	1 cut(s)	630
MspR9I	CCNGG	1 cut(s)	631
MvnI	CGCG	1 cut(s)	178
MwoI	GCNNNNNNNGC	2 cut(s)	230, 314
NciI	CCSGG	1 cut(s)	631
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	3 cut(s)	114, 283, 748
NlaIII	CATG	2 cut(s)	25, 350
NlaIV	GGNNCC	1 cut(s)	19
NmuCI	GTSAC	2 cut(s)	326, 375
NsiI	ATGCAT	1 cut(s)	523
NspI	RCATGY	1 cut(s)	350
PaeI	GCATGC	1 cut(s)	350
PceI	AGGCCT	1 cut(s)	224
PflFI	GACNNNGTC	1 cut(s)	703
PkrI	GCNGC	2 cut(s)	87, 661
PleI	GAGTC	3 cut(s)	66, 515, 835
PpsI	GAGTC	3 cut(s)	66, 515, 835
PsiI	TTATAA	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	748
PsyI	GACNNNGTC	1 cut(s)	703
RseI	CAYNNNNRTG	1 cut(s)	516
SaqAI	TTAA	6 cut(s)	270, 369, 440, 528, 566, 678
SatI	GCNGC	2 cut(s)	86, 660
Sau3AI	GATC	3 cut(s)	114, 283, 748
SchI	GAGTC	3 cut(s)	66, 516, 836
ScrFI	CCNGG	1 cut(s)	631
SduI	GDGCHC	1 cut(s)	310
SetI	ASST	8 cut(s)	39, 48, 60, 90, 335, 408, 737, 759
SfaNI	GCATC	1 cut(s)	508
SfcI	CTRYAG	2 cut(s)	407, 804
SfiI	GGCCNNNNNGGCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	3 cut(s)	215, 452, 536
SmoI	CTYRAG	3 cut(s)	215, 452, 536
SphI	GCATGC	1 cut(s)	350
SseBI	AGGCCT	1 cut(s)	224
SsiI	CCGC	1 cut(s)	124
StuI	AGGCCT	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	629
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	411
Tru1I	TTAA	6 cut(s)	270, 369, 440, 528, 566, 678
Tru9I	TTAA	6 cut(s)	270, 369, 440, 528, 566, 678
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	2 cut(s)	326, 375
TseI	GCWGC	2 cut(s)	85, 659
Tsp45I	GTSAC	2 cut(s)	326, 375
TspDTI	ATGAA	2 cut(s)	279, 676
TspRI	CASTG	1 cut(s)	331
Tth111I	GACNNNGTC	1 cut(s)	703
XagI	CCTNNNNNAGG	1 cut(s)	807
XapI	RAATTY	6 cut(s)	172, 191, 266, 290, 469, 672
XceI	RCATGY	1 cut(s)	350
Zsp2I	ATGCAT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.