Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Forward (+)

4530186 .. 4531254

Gene Structure 1069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG024400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTCGGCGGCGGAGGAGACAGGCACCATGGACGAAGAGGTTTTGAGGCTCAAAGAGCAGCTTTCTCAATGCGAACTCCAAAGGGAGCTGCTCCTGACAGAGAAAGAGAGCTGGATGGCCAAGGAGAGACTTGTCACGCAGGAAAAAGAAGCAGCAGAAGAAAAGCTCAGAGCTTTTATAGAAGCGACTGCGAGTGCAAGATCTGAATTTGAAAAAAAAAGAAAGACACTCAAGGAGGTCTTGGAGACCAAGAAGAAGAGCGTGCATCAGTTAAATAAGGCAATCGATGAGTTTCTTGCTCGTCCTGAGGTGAATTATATGGGAAAACGAACACCCACCATGGAGAAGTTTGATGGATTGATTGCTGAAATACGAAAGAAAAAAATGTGCTTACAAGCAGAGACAGATAAGGTGGACAAGCTACATTCAGAGATATTGGAGAAAAGGGACAATTTATTTGCTTTTCTTAAGACTTGTGTGAAAAATTCAGAAATCACTGACGATGTAAAACCTGTGCTCCGACTCCACTATGATGCATATGTTGACACACTCAAGACTGAGGATGATGATTGTGAAATGTTAAGAAAGTATGTGCATTTTATTCTGCAACCGTTTGTCAGGCTTGACTTTAAATCTCCAATTTCCGCTGCAATGTCTAAATTCTTCAACTTCTTTCTAACAAAGGAGTCCAACAAAGATGCTGAGCATAAACATCCTGTAACTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

28.31

Weight (kDa)

6.36

Isoelectric Point (pI)

52.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	23
AciI	CCGC	3 cut(s)	8, 11, 645
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	3 cut(s)	206, 484, 659
AflII	CTTAAG	1 cut(s)	467
AgsI	TTSAA	2 cut(s)	212, 667
AluBI	AGCT	6 cut(s)	61, 88, 111, 166, 173, 421
AluI	AGCT	6 cut(s)	61, 88, 111, 166, 173, 421
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	4 cut(s)	11, 121, 239, 395
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	4 cut(s)	58, 88, 152, 647
ApoI	RAATTY	3 cut(s)	206, 484, 659
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
AsuHPI	GGTGA	1 cut(s)	322
AxyI	CCTNAGG	1 cut(s)	306
BalI	TGGCCA	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	4 cut(s)	70, 75, 164, 634
BccI	CCATC	2 cut(s)	109, 347
BcoDI	GTCTC	4 cut(s)	11, 121, 239, 395
BfrI	CTTAAG	1 cut(s)	467
BglII	AGATCT	1 cut(s)	200
BisI	GCNGC	5 cut(s)	9, 59, 89, 153, 648
BlpI	GCTNAGC	1 cut(s)	702
BlsI	GCNGC	5 cut(s)	10, 60, 90, 154, 649
BmiI	GGNNCC	1 cut(s)	25
BmsI	GCATC	3 cut(s)	274, 523, 688
Bpu1102I	GCTNAGC	1 cut(s)	702
BpuEI	CTTGAG	2 cut(s)	215, 536
Bsa29I	ATCGAT	1 cut(s)	285
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	3 cut(s)	27, 120, 339
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bse21I	CCTNAGG	1 cut(s)	306
Bse3DI	GCAATG	1 cut(s)	657
BseCI	ATCGAT	1 cut(s)	285
BseDI	CCNNGG	3 cut(s)	27, 120, 339
BseGI	GGATG	3 cut(s)	120, 568, 712
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	4 cut(s)	181, 297, 549, 693
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	4 cut(s)	70, 75, 164, 634
BshFI	GGCC	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	23
BshVI	ATCGAT	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	519
BslFI	GGGAC	1 cut(s)	461
BsmAI	GTCTC	4 cut(s)	11, 121, 239, 395
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	1 cut(s)	119
Bso31I	GGTCTC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp143I	GATC	1 cut(s)	200
Bsp1720I	GCTNAGC	1 cut(s)	702
Bsp19I	CCATGG	2 cut(s)	27, 339
BspACI	CCGC	3 cut(s)	8, 11, 645
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	4 cut(s)	180, 298, 550, 694
BspDI	ATCGAT	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	25
BspQI	GCTCTTC	1 cut(s)	251
BspT107I	GGYRCC	1 cut(s)	23
BspTI	CTTAAG	1 cut(s)	467
BspTNI	GGTCTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	657
BssECI	CCNNGG	3 cut(s)	27, 120, 339
BssMI	GATC	1 cut(s)	200
BssT1I	CCWWGG	3 cut(s)	27, 120, 339
Bst4CI	ACNGT	1 cut(s)	612
Bst6I	CTCTTC	2 cut(s)	30, 251
BstAFI	CTTAAG	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	4 cut(s)	167, 306, 558, 702
BstDSI	CCRYGG	2 cut(s)	27, 339
BstF5I	GGATG	3 cut(s)	120, 568, 712
BstKTI	GATC	1 cut(s)	203
BstMAI	GTCTC	4 cut(s)	11, 121, 239, 395
BstMBI	GATC	1 cut(s)	200
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstV1I	GCAGC	4 cut(s)	70, 75, 164, 634
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
Bsu15I	ATCGAT	1 cut(s)	285
Bsu36I	CCTNAGG	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	119
BsuTUI	ATCGAT	1 cut(s)	285
BtgI	CCRYGG	2 cut(s)	27, 339
BtsCI	GGATG	3 cut(s)	120, 568, 712
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	1 cut(s)	263
ClaI	ATCGAT	1 cut(s)	285
CviAII	CATG	2 cut(s)	28, 340
CviJI	RGCY	9 cut(s)	49, 61, 88, 111, 119, 166, 173, 421, 622
CviKI_1	RGCY	9 cut(s)	49, 61, 88, 111, 119, 166, 173, 421, 622
DdeI	CTNAG	4 cut(s)	167, 306, 558, 702
DpnI	GATC	1 cut(s)	202
DpnII	GATC	1 cut(s)	200
DraI	TTTAAA	1 cut(s)	631
EaeI	YGGCCR	1 cut(s)	117
Eam1104I	CTCTTC	2 cut(s)	30, 251
EarI	CTCTTC	2 cut(s)	30, 251
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	3 cut(s)	27, 120, 339
Eco31I	GGTCTC	1 cut(s)	239
Eco81I	CCTNAGG	1 cut(s)	306
EcoT14I	CCWWGG	3 cut(s)	27, 120, 339
EcoT22I	ATGCAT	1 cut(s)	538
ErhI	CCWWGG	3 cut(s)	27, 120, 339
FaeI	CATG	2 cut(s)	31, 343
FalI	AAGNNNNNCTT	4 cut(s)	45, 77, 224, 256
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	2 cut(s)	27, 339
FauNDI	CATATG	1 cut(s)	538
Fnu4HI	GCNGC	5 cut(s)	9, 59, 89, 153, 648
FokI	GGATG	3 cut(s)	127, 575, 699
Fsp4HI	GCNGC	5 cut(s)	9, 59, 89, 153, 648
GluI	GCNGC	5 cut(s)	9, 59, 89, 153, 648
HaeIII	GGCC	1 cut(s)	119
Hin1II	CATG	2 cut(s)	31, 343
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HinfI	GANTC	2 cut(s)	522, 686
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	2 cut(s)	415, 544
Hpy188I	TCNGA	5 cut(s)	170, 205, 430, 490, 521
Hpy188III	TCNNGA	3 cut(s)	94, 305, 553
Hpy8I	GTNNAC	2 cut(s)	415, 544
HpyCH4III	ACNGT	1 cut(s)	612
HpyCH4V	TGCA	6 cut(s)	197, 265, 536, 595, 607, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	4 cut(s)	167, 306, 558, 702
Hsp92II	CATG	2 cut(s)	31, 343
Kzo9I	GATC	1 cut(s)	200
LguI	GCTCTTC	1 cut(s)	251
LmnI	GCTCC	3 cut(s)	85, 96, 522
LpnPI	CCDG	7 cut(s)	6, 97, 107, 125, 318, 525, 604
Lsp1109I	GCAGC	4 cut(s)	70, 75, 164, 634
LweI	GCATC	3 cut(s)	274, 523, 688
MaeIII	GTNAC	2 cut(s)	133, 718
MalI	GATC	1 cut(s)	202
MboI	GATC	1 cut(s)	200
MboII	GAAGA	5 cut(s)	47, 170, 265, 268, 655
MflI	RGATCY	1 cut(s)	200
MhlI	GDGCHC	1 cut(s)	519
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	6 cut(s)	206, 313, 451, 484, 639, 659
MluNI	TGGCCA	1 cut(s)	119
MlyI	GAGTC	2 cut(s)	516, 695
MmeI	TCCRAC	2 cut(s)	544, 714
MnlI	CCTC	6 cut(s)	7, 31, 39, 229, 301, 553
Mox20I	TGGCCA	1 cut(s)	119
Mph1103I	ATGCAT	1 cut(s)	538
MscI	TGGCCA	1 cut(s)	119
MseI	TTAA	4 cut(s)	272, 468, 581, 630
MslI	CAYNNNNRTG	1 cut(s)	531
Msp20I	TGGCCA	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	647
MspCI	CTTAAG	1 cut(s)	467
MwoI	GCNNNNNNNGC	1 cut(s)	55
NcoI	CCATGG	2 cut(s)	27, 339
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	1 cut(s)	200
NlaIII	CATG	2 cut(s)	31, 343
NlaIV	GGNNCC	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	133
NsiI	ATGCAT	1 cut(s)	538
PciSI	GCTCTTC	1 cut(s)	251
PkrI	GCNGC	5 cut(s)	10, 60, 90, 154, 649
PleI	GAGTC	2 cut(s)	516, 694
PpsI	GAGTC	2 cut(s)	516, 694
PspN4I	GGNNCC	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	200
RseI	CAYNNNNRTG	1 cut(s)	531
SapI	GCTCTTC	1 cut(s)	251
SaqAI	TTAA	4 cut(s)	272, 468, 581, 630
SatI	GCNGC	5 cut(s)	9, 59, 89, 153, 648
Sau3AI	GATC	1 cut(s)	200
SchI	GAGTC	2 cut(s)	516, 695
SduI	GDGCHC	1 cut(s)	519
SfaNI	GCATC	3 cut(s)	274, 523, 688
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	3 cut(s)	230, 467, 551
SmoI	CTYRAG	3 cut(s)	230, 467, 551
Sse9I	AATT	6 cut(s)	206, 313, 451, 484, 639, 659
SsiI	CCGC	3 cut(s)	8, 11, 645
StyI	CCWWGG	3 cut(s)	27, 120, 339
TaaI	ACNGT	1 cut(s)	612
TaqI	TCGA	1 cut(s)	285
TasI	AATT	6 cut(s)	206, 313, 451, 484, 639, 659
TauI	GCSGC	1 cut(s)	11
Tru1I	TTAA	4 cut(s)	272, 468, 581, 630
Tru9I	TTAA	4 cut(s)	272, 468, 581, 630
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	4 cut(s)	58, 88, 152, 647
Tsp45I	GTSAC	1 cut(s)	133
TspRI	CASTG	1 cut(s)	502
Vha464I	CTTAAG	1 cut(s)	467
XapI	RAATTY	3 cut(s)	206, 484, 659
Zsp2I	ATGCAT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.