RLG00000030663

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001468
Physical Location & Seq
Forward (+)
65337847 .. 65339163
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030663

Sequence Viewer

Length: 825 bp
ATGTCAAGTGAGGCAGGCACCGTGAAGTACGAAAAGGTTTTGAAGCTCAAAGAGAAGCTTTCTGAATGCCGACTCCAAAGGAAGCAGCTCTTGAAAGAGAGAGAGATATGGAGGATCAAGGAGCGGAAAATAAAAGAACTACAAGAAGAACTCAGAGTTGAAATAGAAGCGAATTCGCGTGCGACTTCTGAATTTGAAGAAGAAAAGAAGACACTTAAGGAGGCCTTGCAGGCCAAGAGGCAGAGTGTGCGTCAGGTCAAGAAGGCATTGGATGAATTTAATGCTAACCGAGATCGCGAATTCGCTTATAAGGAAGCACAACTAGCCAATGCCAGTGGCAGGTTTGATAGATTGCATGCTGAATTAGAAAAGAAAATTAATTGGTCAGAAGCAGAAGCAGAAGCAGAGAGAGAGAGAGATTATCTGGACAAGCTACAGTCAGAGATAGATGAGAAATGGGACAATTTAATTGCTTTTCTTGAGACTTGTCAGAAAAATTCAAAAATCACTGATGATGTGAAGCCTTGCCTCCGAGCCCACTATGATGCATACATTAAAACACTCAAGAGTGACGATGATGATTGTAAAATGTTAAAAAAGTATGTGCATTTTGTCCTACAACCGAGTTCTGCTCAGAAACAGATGTTTGCCGGGGTTGATTTTATGTCTCCAATTTCTGCTGCAATATCAAACATTTTTAGCTTCTTCATAGGAAAAGAGACGATGTCCAATAGTTCTCCTATCTGTAACGGAAGCTCTACCGACGGAGATCCTAAGGAGGATGAGTGGACAACGAGTCTGAACATCCTGGCGAACCCTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

31.79

Weight (kDa)

5.89

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
Acc36I ACCTGC 1 cut(s) 330
AccB1I GGYRCC 1 cut(s) 17
AccBSI CCGCTC 1 cut(s) 124
AccII CGCG 2 cut(s) 178, 297
AciI CCGC 1 cut(s) 124
AclWI GGATC 2 cut(s) 122, 764
AcsI RAATTY 5 cut(s) 172, 191, 275, 299, 496
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 339
AflII CTTAAG 1 cut(s) 215
AgsI TTSAA 5 cut(s) 43, 94, 161, 197, 501
AhdI GACNNNNNGTC 1 cut(s) 795
AjnI CCWGG 1 cut(s) 807
AluBI AGCT 6 cut(s) 46, 58, 88, 433, 702, 756
AluI AGCT 6 cut(s) 46, 58, 88, 433, 702, 756
Alw26I GTCTC 3 cut(s) 476, 672, 713
AlwI GGATC 2 cut(s) 122, 764
AoxI GGCC 2 cut(s) 222, 231
ApeKI GCWGC 2 cut(s) 85, 680
ApoI RAATTY 5 cut(s) 172, 191, 275, 299, 496
AseI ATTAAT 1 cut(s) 378
AsuC2I CCSGG 1 cut(s) 652
AxyI CCTNAGG 1 cut(s) 774
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 538
BbsI GAAGAC 1 cut(s) 215
BbvI GCAGC 2 cut(s) 97, 667
BciT130I CCWGG 1 cut(s) 809
BcnI CCSGG 1 cut(s) 652
BcoDI GTCTC 3 cut(s) 476, 672, 713
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 1 cut(s) 434
BfrI CTTAAG 1 cut(s) 215
BfuAI ACCTGC 1 cut(s) 330
BglI GCCNNNNNGGC 1 cut(s) 230
BisI GCNGC 2 cut(s) 86, 681
BlsI GCNGC 2 cut(s) 87, 682
Bme1390I CCNGG 2 cut(s) 652, 809
BmeRI GACNNNNNGTC 1 cut(s) 795
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 2 cut(s) 652, 809
BmsI GCATC 1 cut(s) 535
BpiI GAAGAC 1 cut(s) 215
BplI GAGNNNNNCTC 2 cut(s) 616, 648
BpuEI CTTGAG 2 cut(s) 500, 548
BpuMI CCSGG 1 cut(s) 652
BsaJI CCNNGG 1 cut(s) 651
BsaXI ACNNNNNCTCC 2 cut(s) 770, 800
Bsc4I CCNNNNNNNGG 1 cut(s) 339
Bse1I ACTGG 1 cut(s) 333
Bse21I CCTNAGG 1 cut(s) 774
BseBI CCWGG 1 cut(s) 809
BseDI CCNNGG 1 cut(s) 651
BseGI GGATG 3 cut(s) 277, 787, 804
BseLI CCNNNNNNNGG 1 cut(s) 339
BseMII CTCAG 2 cut(s) 166, 647
BseNI ACTGG 1 cut(s) 333
BseXI GCAGC 2 cut(s) 97, 667
Bsh1236I CGCG 2 cut(s) 178, 297
BshFI GGCC 2 cut(s) 224, 233
BshNI GGYRCC 1 cut(s) 17
BsiSI CCGG 1 cut(s) 651
BslFI GGGAC 1 cut(s) 473
BslI CCNNNNNNNGG 1 cut(s) 339
BsmAI GTCTC 3 cut(s) 476, 672, 713
BsmBI CGTCTC 1 cut(s) 713
BsmFI GGGAC 1 cut(s) 473
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 2 cut(s) 224, 233
Bsp1286I GDGCHC 1 cut(s) 538
Bsp143I GATC 3 cut(s) 114, 292, 769
Bsp68I TCGCGA 1 cut(s) 297
BspACI CCGC 1 cut(s) 124
BspANI GGCC 2 cut(s) 224, 233
BspCNI CTCAG 2 cut(s) 165, 646
BspFNI CGCG 2 cut(s) 178, 297
BspLI GGNNCC 1 cut(s) 19
BspMI ACCTGC 1 cut(s) 330
BspPI GGATC 2 cut(s) 122, 764
BspT107I GGYRCC 1 cut(s) 17
BspTI CTTAAG 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 124
BsrI ACTGG 1 cut(s) 333
BssECI CCNNGG 1 cut(s) 651
BssMI GATC 3 cut(s) 114, 292, 769
Bst2UI CCWGG 1 cut(s) 809
Bst4CI ACNGT 2 cut(s) 22, 438
BstAFI CTTAAG 1 cut(s) 215
BstAPI GCANNNNNTGC 1 cut(s) 247
BstC8I GCNNGC 4 cut(s) 16, 180, 231, 357
BstDEI CTNAG 3 cut(s) 152, 633, 774
BstF5I GGATG 3 cut(s) 277, 787, 804
BstFNI CGCG 2 cut(s) 178, 297
BstKTI GATC 3 cut(s) 117, 295, 772
BstMAI GTCTC 3 cut(s) 476, 672, 713
BstMBI GATC 3 cut(s) 114, 292, 769
BstMWI GCNNNNNNNGC 3 cut(s) 230, 247, 323
BstNI CCWGG 1 cut(s) 809
BstNSI RCATGY 1 cut(s) 359
BstSCI CCNGG 2 cut(s) 650, 807
BstSFI CTRYAG 1 cut(s) 434
BstUI CGCG 2 cut(s) 178, 297
BstV1I GCAGC 2 cut(s) 97, 667
BstV2I GAAGAC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 769
BstYI RGATCY 1 cut(s) 769
Bsu36I CCTNAGG 1 cut(s) 774
BsuRI GGCC 2 cut(s) 224, 233
BtsCI GGATG 3 cut(s) 277, 787, 804
BtsIMutI CAGTG 2 cut(s) 340, 507
BtuMI TCGCGA 1 cut(s) 297
BveI ACCTGC 1 cut(s) 330
Cac8I GCNNGC 4 cut(s) 16, 180, 231, 357
CseI GACGC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 28
CspCI CAANNNNNGTGG 2 cut(s) 316, 351
CviAII CATG 1 cut(s) 356
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 3 cut(s) 152, 633, 774
DpnI GATC 3 cut(s) 116, 294, 771
DpnII GATC 3 cut(s) 114, 292, 769
DriI GACNNNNNGTC 1 cut(s) 795
Eam1105I GACNNNNNGTC 1 cut(s) 795
Eco147I AGGCCT 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 538
Eco81I CCTNAGG 1 cut(s) 774
EcoRI GAATTC 2 cut(s) 172, 299
EcoRII CCWGG 1 cut(s) 807
EcoT22I ATGCAT 1 cut(s) 550
EcoT38I GRGCYC 1 cut(s) 538
Esp3I CGTCTC 1 cut(s) 713
FaeI CATG 1 cut(s) 359
FaiI YATR 8 cut(s) 109, 309, 357, 543, 550, 603, 665, 710
FalI AAGNNNNNCTT 6 cut(s) 42, 74, 74, 106, 209, 241
FaqI GGGAC 1 cut(s) 473
FatI CATG 1 cut(s) 355
Fnu4HI GCNGC 2 cut(s) 86, 681
FokI GGATG 3 cut(s) 284, 791, 794
FriOI GRGCYC 1 cut(s) 538
Fsp4HI GCNGC 2 cut(s) 86, 681
FspBI CTAG 1 cut(s) 323
GluI GCNGC 2 cut(s) 86, 681
HaeIII GGCC 2 cut(s) 224, 233
HapII CCGG 1 cut(s) 651
HgaI GACGC 1 cut(s) 239
Hin1II CATG 1 cut(s) 359
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 2 cut(s) 72, 796
HpaII CCGG 1 cut(s) 651
Hpy166II GTNNAC 1 cut(s) 789
Hpy188I TCNGA 9 cut(s) 64, 155, 190, 388, 442, 492, 533, 636, 801
Hpy188III TCNNGA 6 cut(s) 91, 259, 296, 425, 479, 565
Hpy8I GTNNAC 1 cut(s) 789
Hpy99I CGWCG 1 cut(s) 767
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 2 cut(s) 22, 438
HpyCH4V TGCA 5 cut(s) 229, 355, 548, 607, 683
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 247, 323
HpyF3I CTNAG 3 cut(s) 152, 633, 774
Hsp92II CATG 1 cut(s) 359
Kzo9I GATC 3 cut(s) 114, 292, 769
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 8 cut(s) 215, 239, 325, 346, 410, 664, 794, 821
Lsp1109I GCAGC 2 cut(s) 97, 667
LweI GCATC 1 cut(s) 535
MaeI CTAG 1 cut(s) 323
MaeIII GTNAC 2 cut(s) 569, 746
MalI GATC 3 cut(s) 116, 294, 771
MbiI CCGCTC 1 cut(s) 124
MboI GATC 3 cut(s) 114, 292, 769
MboII GAAGA 5 cut(s) 158, 209, 212, 220, 697
MflI RGATCY 1 cut(s) 769
MhlI GDGCHC 1 cut(s) 538
MlyI GAGTC 2 cut(s) 66, 805
MnlI CCTC 6 cut(s) 4, 105, 214, 231, 539, 772
Mph1103I ATGCAT 1 cut(s) 550
MseI TTAA 6 cut(s) 216, 279, 378, 467, 555, 593
MslI CAYNNNNRTG 1 cut(s) 543
MspCI CTTAAG 1 cut(s) 215
MspI CCGG 1 cut(s) 651
MspR9I CCNGG 2 cut(s) 652, 809
Mva1269I GAATGC 1 cut(s) 71
MvaI CCWGG 1 cut(s) 809
MvnI CGCG 2 cut(s) 178, 297
MwoI GCNNNNNNNGC 3 cut(s) 230, 247, 323
NciI CCSGG 1 cut(s) 652
NdeII GATC 3 cut(s) 114, 292, 769
NlaIII CATG 1 cut(s) 359
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 1 cut(s) 569
NruI TCGCGA 1 cut(s) 297
NsiI ATGCAT 1 cut(s) 550
NspI RCATGY 1 cut(s) 359
PaeI GCATGC 1 cut(s) 359
PceI AGGCCT 1 cut(s) 224
PctI GAATGC 1 cut(s) 71
PflFI GACNNNGTC 1 cut(s) 724
PkrI GCNGC 2 cut(s) 87, 682
PleI GAGTC 2 cut(s) 66, 804
PpsI GAGTC 2 cut(s) 66, 804
PshBI ATTAAT 1 cut(s) 378
PsiI TTATAA 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 807
PspGI CCWGG 1 cut(s) 807
PspN4I GGNNCC 1 cut(s) 19
PsuI RGATCY 1 cut(s) 769
PsyI GACNNNGTC 1 cut(s) 724
RruI TCGCGA 1 cut(s) 297
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
RseI CAYNNNNRTG 1 cut(s) 543
SaqAI TTAA 6 cut(s) 216, 279, 378, 467, 555, 593
SatI GCNGC 2 cut(s) 86, 681
Sau3AI GATC 3 cut(s) 114, 292, 769
SchI GAGTC 2 cut(s) 66, 805
ScrFI CCNGG 2 cut(s) 652, 809
SduI GDGCHC 1 cut(s) 538
SetI ASST 9 cut(s) 39, 48, 60, 90, 258, 344, 435, 704, 758
SfaNI GCATC 1 cut(s) 535
SfcI CTRYAG 1 cut(s) 434
SfiI GGCCNNNNNGGCC 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 543
SmlI CTYRAG 3 cut(s) 215, 479, 563
SmoI CTYRAG 3 cut(s) 215, 479, 563
SphI GCATGC 1 cut(s) 359
SseBI AGGCCT 1 cut(s) 224
SsiI CCGC 1 cut(s) 124
SspMI CTAG 1 cut(s) 323
StuI AGGCCT 1 cut(s) 224
StyD4I CCNGG 2 cut(s) 650, 807
TaaI ACNGT 2 cut(s) 22, 438
Tru1I TTAA 6 cut(s) 216, 279, 378, 467, 555, 593
Tru9I TTAA 6 cut(s) 216, 279, 378, 467, 555, 593
TscAI CASTG 2 cut(s) 340, 514
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 2 cut(s) 85, 680
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 2 cut(s) 288, 697
TspGWI ACGGA 2 cut(s) 765, 780
TspRI CASTG 2 cut(s) 340, 514
Tth111I GACNNNGTC 1 cut(s) 724
Vha464I CTTAAG 1 cut(s) 215
VspI ATTAAT 1 cut(s) 378
XapI RAATTY 5 cut(s) 172, 191, 275, 299, 496
XceI RCATGY 1 cut(s) 359
XspI CTAG 1 cut(s) 323
Zsp2I ATGCAT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.