Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Forward (+)

3896176 .. 3897183

Gene Structure 1008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54690

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCTGTTCGGGCACTGTGTGACAAGCCTTAGAATATATGATATTAAGCTAGTCTTTTATAAGACCCAAATTTTCTCCTACCACATGCGATTACATAACCTTGTTTTTGTTTTGCTGCAGCCTTTGCTTAGCCTTTTCTATGCTCAGCCTGGGAATAGCCTTTGGAAATGCAAAGCTGATGCTGCTTTCATGCATTGCACGACCATGAAATCATTTTTTGAGGAAACACTCATAGCAATTCCAGACTTTGTCTTGGATGCACCTGTTGGAGCGCCACCATCTGGTAGTAATGATCCTTTTGGAAACATACATACTTTGTTGCCTCCACCATACGAATCAAGGGAACAAGAGCTACAATATGCTTCGTCTATCAAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dus

Protein Analysis

126

Amino Acids

14.32

Weight (kDa)

6.49

Isoelectric Point (pI)

59.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	60
AccB7I	CCANNNNNTGG	1 cut(s)	281
AclWI	GGATC	1 cut(s)	287
AcsI	RAATTY	1 cut(s)	69
AdeI	CACNNNGTG	1 cut(s)	19
AfiI	CCNNNNNNNGG	1 cut(s)	281
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	3 cut(s)	49, 176, 352
AluI	AGCT	3 cut(s)	49, 176, 352
AlwI	GGATC	1 cut(s)	287
ApeKI	GCWGC	3 cut(s)	115, 118, 182
ApoI	RAATTY	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	274
BaeGI	GKGCMC	1 cut(s)	15
BbvI	GCAGC	3 cut(s)	102, 130, 169
BccI	CCATC	1 cut(s)	286
BciT130I	CCWGG	1 cut(s)	150
BfaI	CTAG	1 cut(s)	50
BfmI	CTRYAG	1 cut(s)	116
BfoI	RGCGCY	1 cut(s)	275
BisI	GCNGC	3 cut(s)	116, 119, 183
BlpI	GCTNAGC	2 cut(s)	128, 144
BlsI	GCNGC	3 cut(s)	117, 120, 184
Bme1390I	CCNGG	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	2 cut(s)	169, 247
Bpu1102I	GCTNAGC	2 cut(s)	128, 144
BsaJI	CCNNGG	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse3DI	GCAATG	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMI	GCAATG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	158
BseSI	GKGCMC	1 cut(s)	15
BseXI	GCAGC	3 cut(s)	102, 130, 169
BslI	CCNNNNNNNGG	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	292
Bsp1720I	GCTNAGC	2 cut(s)	128, 144
BspCNI	CTCAG	1 cut(s)	157
BspMAI	CTGCAG	1 cut(s)	120
BspPI	GGATC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	1 cut(s)	292
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	124
BstDEI	CTNAG	3 cut(s)	29, 128, 144
BstF5I	GGATG	1 cut(s)	262
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 124, 182
BstNI	CCWGG	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	116
BstSLI	GKGCMC	1 cut(s)	15
BstV1I	GCAGC	3 cut(s)	102, 130, 169
BtsCI	GGATG	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	13
CfoI	GCGC	1 cut(s)	274
CviAII	CATG	3 cut(s)	85, 190, 205
CviJI	RGCY	8 cut(s)	27, 49, 121, 132, 148, 159, 176, 352
CviKI_1	RGCY	8 cut(s)	27, 49, 121, 132, 148, 159, 176, 352
DdeI	CTNAG	3 cut(s)	29, 128, 144
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
DraIII	CACNNNGTG	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	148
EcoT22I	ATGCAT	1 cut(s)	195
FaeI	CATG	3 cut(s)	88, 193, 208
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FatI	CATG	3 cut(s)	84, 189, 204
Fnu4HI	GCNGC	3 cut(s)	116, 119, 183
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	3 cut(s)	116, 119, 183
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	3 cut(s)	116, 119, 183
HaeII	RGCGCY	1 cut(s)	275
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	3 cut(s)	88, 193, 208
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HinfI	GANTC	1 cut(s)	335
Hpy188III	TCNNGA	1 cut(s)	242
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4V	TGCA	5 cut(s)	118, 171, 193, 198, 260
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 124, 182
HpyF3I	CTNAG	3 cut(s)	29, 128, 144
Hsp92II	CATG	3 cut(s)	88, 193, 208
HspAI	GCGC	1 cut(s)	272
Kzo9I	GATC	1 cut(s)	292
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	5 cut(s)	135, 162, 255, 267, 276
Lsp1109I	GCAGC	3 cut(s)	102, 130, 169
LweI	GCATC	2 cut(s)	169, 247
MaeI	CTAG	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	2 cut(s)	69, 237
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	2 cut(s)	214, 333
Mph1103I	ATGCAT	1 cut(s)	195
MseI	TTAA	2 cut(s)	45, 379
MslI	CAYNNNNRTG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	3 cut(s)	10, 124, 182
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	3 cut(s)	88, 193, 208
NmuCI	GTSAC	1 cut(s)	19
NsiI	ATGCAT	1 cut(s)	195
NspI	RCATGY	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	335
PflFI	GACNNNGTC	1 cut(s)	248
PflMI	CCANNNNNTGG	1 cut(s)	281
PkrI	GCNGC	3 cut(s)	117, 120, 184
PsiI	TTATAA	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PsrI	GAACNNNNNNTAC	2 cut(s)	336, 368
PstI	CTGCAG	1 cut(s)	120
PsyI	GACNNNGTC	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	45, 379
SatI	GCNGC	3 cut(s)	116, 119, 183
Sau3AI	GATC	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	5 cut(s)	51, 102, 178, 265, 354
SfaNI	GCATC	2 cut(s)	169, 247
SfcI	CTRYAG	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	203
Sse9I	AATT	2 cut(s)	69, 237
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	17
TasI	AATT	2 cut(s)	69, 237
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	2 cut(s)	45, 379
Tru9I	TTAA	2 cut(s)	45, 379
TscAI	CASTG	1 cut(s)	20
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	3 cut(s)	115, 118, 182
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	2 cut(s)	178, 221
TspRI	CASTG	1 cut(s)	20
Tth111I	GACNNNGTC	1 cut(s)	248
Van91I	CCANNNNNTGG	1 cut(s)	281
XapI	RAATTY	1 cut(s)	69
XceI	RCATGY	1 cut(s)	88
XspI	CTAG	1 cut(s)	50
Zsp2I	ATGCAT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.