Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Forward (+)

64757576 .. 64758855

Gene Structure 1280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00330960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTCAAGTGAGGCAGGCACCATGGACTACAAAAAGGTTTTGAAGCTCAAAGAGAAGCAGCTCTTGAAAGAGAGAGAGATATGGAGGATCAAGGAGCGGAAAATAAAAGAACTACAAGAAGAACTCAGAGTTGAAATAGAAGCGAATTCGCGTGCGACTTCTGAATTTGAAGGAAAAAAGAAGCCACTCAAGGAGGCCTTGCAGGCCAAGAGGCAGAGTGTACGTCAGGTCAAGAAGGCATTGGATGAATTTAATGCTAACCGAGATCGTGAATTCCCTTATAAGGGAGCACAAACAGCCAATGCCAGTGACAGGTTTGATAGATTGCATGCTGAATTAGAAAAGAAAATTAAGTGGTCACAAGCAGAGAGAGATAATCTGGACAAGCTACAGTCAAAGATAGATGAGAAATGGGACAATTTAATTGCTTTTCTTGAGACTTGTCGGAAAAATTCAAAAATCACTAATGATGTGAAGCCTTGCCTCCGAGTCCACTATGATGCATACATTAAAACACTCAAGACTGACGATGATGATTGTAAAATGTTAAAAAAGTATGTGCATTTTGTTCTACAACCGAGTTCTGCTCAGAAGCAAAATCAGATGTTTGCCGTGGTTGATTTTATATCTCCAATGTCTGCTGCAATATCAAAAATTTTTAACTTCTTCATAGGAAAAGAGACGAAGTCCAATAGTTCTCTTATATATAACAGAAGCTCTACCGACAGAGATCCTAAGCGTAAACATCCTGTAGGAGGAAGAGTGGACAACGAGTCTGAACATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

262

Amino Acids

30.67

Weight (kDa)

9.47

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	282
AccB1I	GGYRCC	1 cut(s)	17
AccBSI	CCGCTC	1 cut(s)	97
AccII	CGCG	1 cut(s)	151
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	2 cut(s)	95, 725
AcsI	RAATTY	6 cut(s)	145, 164, 248, 272, 451, 654
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	4 cut(s)	283, 284, 312, 755
AgsI	TTSAA	5 cut(s)	43, 67, 134, 170, 456
AhdI	GACNNNNNGTC	1 cut(s)	772
AluBI	AGCT	4 cut(s)	46, 61, 388, 717
AluI	AGCT	4 cut(s)	46, 61, 388, 717
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	2 cut(s)	431, 674
AlwI	GGATC	2 cut(s)	95, 725
AoxI	GGCC	2 cut(s)	195, 204
ApeKI	GCWGC	2 cut(s)	58, 641
ApoI	RAATTY	6 cut(s)	145, 164, 248, 272, 451, 654
BanI	GGYRCC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	2 cut(s)	70, 628
BceAI	ACGGC	1 cut(s)	596
BcoDI	GTCTC	2 cut(s)	431, 674
BfmI	CTRYAG	2 cut(s)	389, 750
BglI	GCCNNNNNGGC	1 cut(s)	203
BisI	GCNGC	2 cut(s)	59, 642
BlsI	GCNGC	2 cut(s)	60, 643
BmeRI	GACNNNNNGTC	1 cut(s)	772
BmiI	GGNNCC	1 cut(s)	19
BmsI	GCATC	1 cut(s)	490
BplI	GAGNNNNNCTC	2 cut(s)	571, 603
Bpu10I	CCTNAGC	1 cut(s)	735
BpuEI	CTTGAG	3 cut(s)	173, 455, 503
BsaJI	CCNNGG	2 cut(s)	21, 612
BsaXI	ACNNNNNCTCC	2 cut(s)	747, 777
Bsc4I	CCNNNNNNNGG	4 cut(s)	283, 284, 312, 755
Bse1I	ACTGG	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	21, 612
BseGI	GGATG	2 cut(s)	250, 745
BseLI	CCNNNNNNNGG	4 cut(s)	283, 284, 312, 755
BseMII	CTCAG	2 cut(s)	139, 602
BseNI	ACTGG	1 cut(s)	306
BseXI	GCAGC	2 cut(s)	70, 628
Bsh1236I	CGCG	1 cut(s)	151
BshFI	GGCC	2 cut(s)	197, 206
BshNI	GGYRCC	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	292
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	4 cut(s)	283, 284, 312, 755
BsmAI	GTCTC	2 cut(s)	431, 674
BsmBI	CGTCTC	1 cut(s)	674
BsmFI	GGGAC	1 cut(s)	428
BsnI	GGCC	2 cut(s)	197, 206
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	87, 265, 730
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	1 cut(s)	97
BspANI	GGCC	2 cut(s)	197, 206
BspCNI	CTCAG	2 cut(s)	138, 601
BspFNI	CGCG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	19
BspPI	GGATC	2 cut(s)	95, 725
BspT107I	GGYRCC	1 cut(s)	17
BsrBI	CCGCTC	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	2 cut(s)	21, 612
BssMI	GATC	3 cut(s)	87, 265, 730
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	393
Bst6I	CTCTTC	1 cut(s)	754
BstC8I	GCNNGC	4 cut(s)	16, 153, 204, 330
BstDEI	CTNAG	3 cut(s)	125, 588, 735
BstDSI	CCRYGG	2 cut(s)	21, 612
BstENI	CCTNNNNNAGG	1 cut(s)	753
BstF5I	GGATG	2 cut(s)	250, 745
BstFNI	CGCG	1 cut(s)	151
BstKTI	GATC	3 cut(s)	90, 268, 733
BstMAI	GTCTC	2 cut(s)	431, 674
BstMBI	GATC	3 cut(s)	87, 265, 730
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 296
BstNSI	RCATGY	1 cut(s)	332
BstSFI	CTRYAG	2 cut(s)	389, 750
BstUI	CGCG	1 cut(s)	151
BstV1I	GCAGC	2 cut(s)	70, 628
BstX2I	RGATCY	1 cut(s)	730
BstYI	RGATCY	1 cut(s)	730
BsuRI	GGCC	2 cut(s)	197, 206
BtgI	CCRYGG	2 cut(s)	21, 612
BtsCI	GGATG	2 cut(s)	250, 745
BtsIMutI	CAGTG	1 cut(s)	313
Cac8I	GCNNGC	4 cut(s)	16, 153, 204, 330
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	2 cut(s)	22, 329
CviJI	RGCY	9 cut(s)	46, 61, 184, 197, 206, 299, 388, 478, 717
CviKI_1	RGCY	9 cut(s)	46, 61, 184, 197, 206, 299, 388, 478, 717
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	3 cut(s)	125, 588, 735
DpnI	GATC	3 cut(s)	89, 267, 732
DpnII	GATC	3 cut(s)	87, 265, 730
DriI	GACNNNNNGTC	1 cut(s)	772
Eam1104I	CTCTTC	1 cut(s)	754
Eam1105I	GACNNNNNGTC	1 cut(s)	772
EarI	CTCTTC	1 cut(s)	754
Eco130I	CCWWGG	1 cut(s)	21
Eco147I	AGGCCT	1 cut(s)	197
EcoNI	CCTNNNNNAGG	1 cut(s)	753
EcoRI	GAATTC	2 cut(s)	145, 272
EcoT14I	CCWWGG	1 cut(s)	21
EcoT22I	ATGCAT	1 cut(s)	505
ErhI	CCWWGG	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	674
FaeI	CATG	2 cut(s)	25, 332
FalI	AAGNNNNNCTT	4 cut(s)	47, 79, 182, 214
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	2 cut(s)	21, 328
Fnu4HI	GCNGC	2 cut(s)	59, 642
FokI	GGATG	2 cut(s)	257, 732
Fsp4HI	GCNGC	2 cut(s)	59, 642
GluI	GCNGC	2 cut(s)	59, 642
HaeIII	GGCC	2 cut(s)	197, 206
Hin1II	CATG	2 cut(s)	25, 332
HinfI	GANTC	2 cut(s)	489, 773
Hpy166II	GTNNAC	4 cut(s)	221, 493, 743, 766
Hpy188I	TCNGA	7 cut(s)	128, 163, 447, 488, 591, 603, 778
Hpy188III	TCNNGA	6 cut(s)	64, 232, 269, 380, 434, 520
Hpy8I	GTNNAC	4 cut(s)	221, 493, 743, 766
HpyAV	CCTTC	2 cut(s)	164, 229
HpyCH4III	ACNGT	1 cut(s)	393
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	5 cut(s)	202, 328, 503, 562, 644
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 296
HpyF3I	CTNAG	3 cut(s)	125, 588, 735
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	2 cut(s)	25, 332
Kzo9I	GATC	3 cut(s)	87, 265, 730
LmnI	GCTCC	2 cut(s)	94, 287
LpnPI	CCDG	6 cut(s)	188, 212, 298, 319, 365, 762
Lsp1109I	GCAGC	2 cut(s)	70, 628
LweI	GCATC	1 cut(s)	490
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	2 cut(s)	308, 357
MalI	GATC	3 cut(s)	89, 267, 732
MbiI	CCGCTC	1 cut(s)	97
MboI	GATC	3 cut(s)	87, 265, 730
MboII	GAAGA	3 cut(s)	131, 658, 771
MflI	RGATCY	1 cut(s)	730
MhlI	GDGCHC	1 cut(s)	292
MlyI	GAGTC	2 cut(s)	498, 782
MmeI	TCCRAC	1 cut(s)	425
MnlI	CCTC	6 cut(s)	4, 78, 187, 204, 494, 749
Mph1103I	ATGCAT	1 cut(s)	505
MseI	TTAA	6 cut(s)	252, 351, 422, 510, 548, 660
MslI	CAYNNNNRTG	1 cut(s)	498
MvnI	CGCG	1 cut(s)	151
MwoI	GCNNNNNNNGC	2 cut(s)	203, 296
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	3 cut(s)	87, 265, 730
NlaIII	CATG	2 cut(s)	25, 332
NlaIV	GGNNCC	1 cut(s)	19
NmuCI	GTSAC	2 cut(s)	308, 357
NsiI	ATGCAT	1 cut(s)	505
NspI	RCATGY	1 cut(s)	332
PaeI	GCATGC	1 cut(s)	332
PceI	AGGCCT	1 cut(s)	197
PflFI	GACNNNGTC	1 cut(s)	685
PkrI	GCNGC	2 cut(s)	60, 643
PleI	GAGTC	2 cut(s)	497, 781
PpsI	GAGTC	2 cut(s)	497, 781
PsiI	TTATAA	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	730
PsyI	GACNNNGTC	1 cut(s)	685
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	498
SaqAI	TTAA	6 cut(s)	252, 351, 422, 510, 548, 660
SatI	GCNGC	2 cut(s)	59, 642
Sau3AI	GATC	3 cut(s)	87, 265, 730
SchI	GAGTC	2 cut(s)	498, 782
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	8 cut(s)	39, 48, 63, 226, 231, 317, 390, 719
SfaNI	GCATC	1 cut(s)	490
SfcI	CTRYAG	2 cut(s)	389, 750
SfiI	GGCCNNNNNGGCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	3 cut(s)	188, 434, 518
SmoI	CTYRAG	3 cut(s)	188, 434, 518
SphI	GCATGC	1 cut(s)	332
SseBI	AGGCCT	1 cut(s)	197
SsiI	CCGC	1 cut(s)	97
StuI	AGGCCT	1 cut(s)	197
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	393
TaiI	ACGT	1 cut(s)	226
Tru1I	TTAA	6 cut(s)	252, 351, 422, 510, 548, 660
Tru9I	TTAA	6 cut(s)	252, 351, 422, 510, 548, 660
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	2 cut(s)	308, 357
TseI	GCWGC	2 cut(s)	58, 641
Tsp45I	GTSAC	2 cut(s)	308, 357
TspDTI	ATGAA	2 cut(s)	261, 658
TspRI	CASTG	1 cut(s)	313
Tth111I	GACNNNGTC	1 cut(s)	685
XagI	CCTNNNNNAGG	1 cut(s)	753
XapI	RAATTY	6 cut(s)	145, 164, 248, 272, 451, 654
XceI	RCATGY	1 cut(s)	332
Zsp2I	ATGCAT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.