Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Forward (+)

3457900 .. 3461681

Gene Structure 3782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG020700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGATCAGGAAGCAGCTCTTGAAAGAGAGAGAGTTATGGAGGATCAAGGAGAGGAAAATAAAAGAACTACAAGAAGAACTCAGAGTTGAAATAGAAGCGAATTCTCGTGCGACTTCTGAATTTGAAGAAAAAAAGAAGACACTCAAGGAGGCCAAGAGGCAGAGTGTGCGTCAGGTCAAGAAGGCATTGGATGAATTTAATGCTAACCGAGATCGTGAATTCGCTTATAAGGGAGCACAAATAGCCAATGCCAGTGGCAGGTTTGATAGATTGCATGCTGAATTAGGAAAGAAAATTAATTGGTCAGAAGCAGAAGCAGAGAGAGATTATCTGGACAAGCTACAGTCAGAGATAGATGAGAAATGGGACAATTTAATTGCTTTTCTTGAGACTTGTCGGAAAAATTCAAAAATCACTGATGATGTGAAGCCTTGCCTCCGAGTCCACTATGATGCATACATTAAAACACTCAAGAGTGACGATGATGATTGTAAAATGTTAAAAAAAAGGGCGAAGGCACCAGACTGTTTTCTAGCAACAGTGAACTTGAGGGTCATTCATCTAAGTGATCTAACCCAAGTTGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

196

Amino Acids

23.16

Weight (kDa)

8.75

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	228
Acc36I	ACCTGC	1 cut(s)	249
AccB1I	GGYRCC	1 cut(s)	517
AclWI	GGATC	1 cut(s)	50
AcsI	RAATTY	5 cut(s)	100, 119, 194, 218, 403
AfiI	CCNNNNNNNGG	1 cut(s)	258
AgsI	TTSAA	4 cut(s)	22, 89, 125, 408
AluBI	AGCT	2 cut(s)	16, 340
AluI	AGCT	2 cut(s)	16, 340
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	1 cut(s)	383
AlwI	GGATC	1 cut(s)	50
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	13
ApoI	RAATTY	5 cut(s)	100, 119, 194, 218, 403
AseI	ATTAAT	1 cut(s)	297
BanI	GGYRCC	1 cut(s)	517
BauI	CACGAG	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	1 cut(s)	25
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	1 cut(s)	533
BfmI	CTRYAG	1 cut(s)	341
BfuAI	ACCTGC	1 cut(s)	249
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
BmiI	GGNNCC	1 cut(s)	519
BmsI	GCATC	1 cut(s)	442
BpiI	GAAGAC	1 cut(s)	143
BpuEI	CTTGAG	4 cut(s)	128, 407, 455, 568
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	25
BshFI	GGCC	1 cut(s)	152
BshNI	GGYRCC	1 cut(s)	517
BsiHKAI	GWGCWC	1 cut(s)	238
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	1 cut(s)	258
BsmAI	GTCTC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	380
BsnI	GGCC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	4 cut(s)	3, 42, 211, 568
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	519
BspMI	ACCTGC	1 cut(s)	249
BspPI	GGATC	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	517
BsrI	ACTGG	1 cut(s)	252
BssMI	GATC	4 cut(s)	3, 42, 211, 568
BssSI	CACGAG	1 cut(s)	105
Bst2BI	CACGAG	1 cut(s)	105
Bst4CI	ACNGT	3 cut(s)	345, 527, 541
BstAPI	GCANNNNNTGC	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	2 cut(s)	80, 563
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	4 cut(s)	6, 45, 214, 571
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	4 cut(s)	3, 42, 211, 568
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 242
BstNSI	RCATGY	1 cut(s)	278
BstSFI	CTRYAG	1 cut(s)	341
BstV1I	GCAGC	1 cut(s)	25
BstV2I	GAAGAC	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	196
BtsIMutI	CAGTG	3 cut(s)	259, 414, 546
BveI	ACCTGC	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	276
CseI	GACGC	1 cut(s)	158
CspCI	CAANNNNNGTGG	2 cut(s)	235, 270
CviAII	CATG	1 cut(s)	275
CviJI	RGCY	5 cut(s)	16, 152, 245, 340, 430
CviKI_1	RGCY	5 cut(s)	16, 152, 245, 340, 430
DdeI	CTNAG	2 cut(s)	80, 563
DpnI	GATC	4 cut(s)	5, 44, 213, 570
DpnII	GATC	4 cut(s)	3, 42, 211, 568
EcoRI	GAATTC	2 cut(s)	100, 218
EcoT22I	ATGCAT	1 cut(s)	457
FaeI	CATG	1 cut(s)	278
FaiI	YATR	5 cut(s)	37, 228, 276, 450, 457
FalI	AAGNNNNNCTT	1 cut(s)	34
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	1 cut(s)	274
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	14
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	14
FspBI	CTAG	1 cut(s)	533
GluI	GCNGC	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	152
HgaI	GACGC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	278
HinfI	GANTC	1 cut(s)	441
Hpy166II	GTNNAC	2 cut(s)	445, 544
Hpy188I	TCNGA	6 cut(s)	83, 118, 307, 349, 399, 440
Hpy188III	TCNNGA	7 cut(s)	7, 19, 178, 215, 332, 386, 472
Hpy8I	GTNNAC	2 cut(s)	445, 544
HpyAV	CCTTC	2 cut(s)	175, 508
HpyCH4III	ACNGT	3 cut(s)	345, 527, 541
HpyCH4V	TGCA	2 cut(s)	274, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 242
HpyF3I	CTNAG	2 cut(s)	80, 563
Hsp92II	CATG	1 cut(s)	278
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 42, 211, 568
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	5 cut(s)	158, 244, 265, 317, 534
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	1 cut(s)	442
MaeI	CTAG	1 cut(s)	533
MaeIII	GTNAC	1 cut(s)	476
MalI	GATC	4 cut(s)	5, 44, 213, 570
MboI	GATC	4 cut(s)	3, 42, 211, 568
MboII	GAAGA	3 cut(s)	86, 137, 148
MhlI	GDGCHC	1 cut(s)	238
MlyI	GAGTC	1 cut(s)	450
MmeI	TCCRAC	1 cut(s)	377
MnlI	CCTC	6 cut(s)	33, 45, 142, 150, 446, 543
Mph1103I	ATGCAT	1 cut(s)	457
MseI	TTAA	5 cut(s)	198, 297, 374, 462, 500
MslI	CAYNNNNRTG	2 cut(s)	450, 564
MwoI	GCNNNNNNNGC	2 cut(s)	166, 242
NdeII	GATC	4 cut(s)	3, 42, 211, 568
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	1 cut(s)	519
NmuCI	GTSAC	1 cut(s)	476
NsiI	ATGCAT	1 cut(s)	457
NspI	RCATGY	1 cut(s)	278
PaeI	GCATGC	1 cut(s)	278
PkrI	GCNGC	1 cut(s)	15
PleI	GAGTC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	449
PshBI	ATTAAT	1 cut(s)	297
PsiI	TTATAA	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	519
RseI	CAYNNNNRTG	2 cut(s)	450, 564
SaqAI	TTAA	5 cut(s)	198, 297, 374, 462, 500
SatI	GCNGC	1 cut(s)	14
Sau3AI	GATC	4 cut(s)	3, 42, 211, 568
SchI	GAGTC	1 cut(s)	450
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	4 cut(s)	18, 177, 263, 342
SfaNI	GCATC	1 cut(s)	442
SfcI	CTRYAG	1 cut(s)	341
SmiMI	CAYNNNNRTG	2 cut(s)	450, 564
SmlI	CTYRAG	4 cut(s)	143, 386, 470, 547
SmoI	CTYRAG	4 cut(s)	143, 386, 470, 547
SphI	GCATGC	1 cut(s)	278
SspMI	CTAG	1 cut(s)	533
TaaI	ACNGT	3 cut(s)	345, 527, 541
Tru1I	TTAA	5 cut(s)	198, 297, 374, 462, 500
Tru9I	TTAA	5 cut(s)	198, 297, 374, 462, 500
TscAI	CASTG	3 cut(s)	259, 421, 546
TseFI	GTSAC	1 cut(s)	476
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	1 cut(s)	476
TspDTI	ATGAA	2 cut(s)	207, 548
TspRI	CASTG	3 cut(s)	259, 421, 546
VspI	ATTAAT	1 cut(s)	297
XapI	RAATTY	5 cut(s)	100, 119, 194, 218, 403
XceI	RCATGY	1 cut(s)	278
XspI	CTAG	1 cut(s)	533
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.