Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Forward (+)

3229799 .. 3230764

Gene Structure 966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG020600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTTGACGGCGGATGAGGCTGGCACCATGGACGAAGAGGTTTTCAAGCTTAAAGAGAAGCTTTCTCAATGCCAACTCGAAAGGGAGCAGCTCCTGAGAGAGAAAGAGAGCTGGATGATCAAGGAGCAAATTGTGATGCGGGAAAAAGAAGAAGTAGAAGAAAAGCTCAGAATTGAAATAGAGGCGAATTTGTGCGCAAGATCTGAATTTGAAAAAAAAAAGAAGCTACTCAAGGAGGCCTTGGAGACCAAAAAGAAGAGTTTACGTCAGCTAAAAAACGCATTCGATGAGTTTCATGCTAATCGTGAAATGCCTTATATGGGAGCACGATCAGCCAATGCCAATGACAAGTTAAAGAGATTGCGTGCTCAATTAGAAAAGGAAAGTAAGTGCTCACAAGCAGAGATAGATAAGCTGGACAAGCTTCATTCAGACATAATTGAGAAACGGGACAATTTATTTGCTTTTCTTAAGACTTGTGTGAAAAATTCAAAAATCACTGATGATGTCATACCTTTGCTCCGAGTCCACTATGATGCATATATTGACAAACTCAGGACTGAAGATGATGATTGTGAACCGTTAAGAAAGTATGTGCATTTTGTTCTACAACCGGGTTCTTCTCAGAAGCAAAATAAGATGTTTGCCGGGGTTGATTTTATATCTCCAATTTTTGCTGCAATGTCAAAAAATTTTAACATCTTCCTGAGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

28.03

Weight (kDa)

8.44

Isoelectric Point (pI)

51.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	196
AccB1I	GGYRCC	1 cut(s)	23
AciI	CCGC	2 cut(s)	11, 139
AcsI	RAATTY	4 cut(s)	187, 206, 487, 691
AcuI	CTGAAG	1 cut(s)	582
AfiI	CCNNNNNNNGG	1 cut(s)	320
AflII	CTTAAG	1 cut(s)	470
AgsI	TTSAA	4 cut(s)	46, 176, 212, 492
AluBI	AGCT	9 cut(s)	49, 61, 91, 111, 166, 226, 271, 415, 424
AluI	AGCT	9 cut(s)	49, 61, 91, 111, 166, 226, 271, 415, 424
Alw21I	GWGCWC	3 cut(s)	328, 370, 395
Alw26I	GTCTC	1 cut(s)	239
AlwNI	CAGNNNCTG	1 cut(s)	94
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	2 cut(s)	88, 677
ApoI	RAATTY	4 cut(s)	187, 206, 487, 691
ArsI	GACNNNNNNTTYG	2 cut(s)	443, 475
AspLEI	GCGC	1 cut(s)	197
AsuC2I	CCSGG	2 cut(s)	615, 649
BanI	GGYRCC	1 cut(s)	23
Bbv12I	GWGCWC	3 cut(s)	328, 370, 395
BbvI	GCAGC	2 cut(s)	100, 664
BceAI	ACGGC	1 cut(s)	24
BclI	TGATCA	1 cut(s)	117
BcnI	CCSGG	2 cut(s)	615, 649
BcoDI	GTCTC	1 cut(s)	239
BfrI	CTTAAG	1 cut(s)	470
BglII	AGATCT	1 cut(s)	200
BisI	GCNGC	2 cut(s)	89, 678
BlsI	GCNGC	2 cut(s)	90, 679
Bme1390I	CCNGG	2 cut(s)	615, 649
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	2 cut(s)	615, 649
BmsI	GCATC	2 cut(s)	126, 526
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	2 cut(s)	615, 649
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	3 cut(s)	27, 240, 648
BsaXI	ACNNNNNCTCC	2 cut(s)	504, 534
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse3DI	GCAATG	1 cut(s)	687
BseDI	CCNNGG	3 cut(s)	27, 240, 648
BseGI	GGATG	2 cut(s)	19, 120
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMI	GCAATG	1 cut(s)	687
BseMII	CTCAG	5 cut(s)	86, 181, 568, 638, 698
BseXI	GCAGC	2 cut(s)	100, 664
BshFI	GGCC	1 cut(s)	239
BshNI	GGYRCC	1 cut(s)	23
BsiHKAI	GWGCWC	3 cut(s)	328, 370, 395
BsiSI	CCGG	2 cut(s)	614, 648
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	464
BsmI	GAATGC	1 cut(s)	281
BsnI	GGCC	1 cut(s)	239
Bso31I	GGTCTC	1 cut(s)	239
Bsp1286I	GDGCHC	3 cut(s)	328, 370, 395
Bsp143I	GATC	3 cut(s)	117, 200, 329
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	2 cut(s)	11, 139
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	5 cut(s)	87, 180, 567, 637, 699
BspLI	GGNNCC	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	23
BspTI	CTTAAG	1 cut(s)	470
BspTNI	GGTCTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	687
BssECI	CCNNGG	3 cut(s)	27, 240, 648
BssMI	GATC	3 cut(s)	117, 200, 329
BssT1I	CCWWGG	2 cut(s)	27, 240
Bst4CI	ACNGT	1 cut(s)	582
Bst6I	CTCTTC	2 cut(s)	30, 251
BstAFI	CTTAAG	1 cut(s)	470
BstC8I	GCNNGC	2 cut(s)	22, 366
BstDEI	CTNAG	5 cut(s)	95, 167, 554, 624, 707
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	19, 120
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	3 cut(s)	120, 203, 332
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	3 cut(s)	117, 200, 329
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 332, 421
BstSCI	CCNGG	2 cut(s)	613, 647
BstV1I	GCAGC	2 cut(s)	100, 664
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	2 cut(s)	19, 120
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	2 cut(s)	22, 366
CaiI	CAGNNNCTG	1 cut(s)	94
CfoI	GCGC	1 cut(s)	197
CviAII	CATG	2 cut(s)	28, 296
DdeI	CTNAG	5 cut(s)	95, 167, 554, 624, 707
DpnI	GATC	3 cut(s)	119, 202, 331
DpnII	GATC	3 cut(s)	117, 200, 329
Eam1104I	CTCTTC	2 cut(s)	30, 251
EarI	CTCTTC	2 cut(s)	30, 251
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	2 cut(s)	27, 240
Eco147I	AGGCCT	1 cut(s)	239
Eco31I	GGTCTC	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	582
EcoT14I	CCWWGG	2 cut(s)	27, 240
EcoT22I	ATGCAT	1 cut(s)	541
ErhI	CCWWGG	2 cut(s)	27, 240
FaeI	CATG	2 cut(s)	31, 299
FalI	AAGNNNNNCTT	4 cut(s)	45, 77, 224, 256
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	2 cut(s)	27, 295
FauI	CCCGC	1 cut(s)	132
FbaI	TGATCA	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	89, 678
FokI	GGATG	2 cut(s)	26, 127
Fsp4HI	GCNGC	2 cut(s)	89, 678
FspI	TGCGCA	1 cut(s)	196
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	2 cut(s)	89, 678
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	2 cut(s)	614, 648
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	2 cut(s)	31, 299
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	3 cut(s)	47, 59, 422
HinfI	GANTC	1 cut(s)	525
HpaII	CCGG	2 cut(s)	614, 648
Hpy166II	GTNNAC	4 cut(s)	6, 263, 529, 578
Hpy188I	TCNGA	5 cut(s)	170, 205, 433, 524, 627
Hpy188III	TCNNGA	4 cut(s)	94, 305, 556, 706
Hpy8I	GTNNAC	4 cut(s)	6, 263, 529, 578
HpyCH4III	ACNGT	1 cut(s)	582
HpyCH4IV	ACGT	1 cut(s)	265
HpyCH4V	TGCA	3 cut(s)	539, 598, 680
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 332, 421
HpyF3I	CTNAG	5 cut(s)	95, 167, 554, 624, 707
HpySE526I	ACGT	1 cut(s)	265
Hsp92II	CATG	2 cut(s)	31, 299
HspAI	GCGC	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	3 cut(s)	117, 200, 329
LmnI	GCTCC	5 cut(s)	85, 96, 124, 323, 525
LpnPI	CCDG	7 cut(s)	6, 97, 107, 401, 541, 627, 661
Lsp1109I	GCAGC	2 cut(s)	100, 664
LweI	GCATC	2 cut(s)	126, 526
MaeII	ACGT	1 cut(s)	265
MalI	GATC	3 cut(s)	119, 202, 331
MboI	GATC	3 cut(s)	117, 200, 329
MboII	GAAGA	7 cut(s)	47, 161, 170, 268, 575, 612, 694
MflI	RGATCY	1 cut(s)	200
MhlI	GDGCHC	3 cut(s)	328, 370, 395
MlyI	GAGTC	1 cut(s)	534
MnlI	CCTC	4 cut(s)	10, 31, 175, 229
Mph1103I	ATGCAT	1 cut(s)	541
MseI	TTAA	5 cut(s)	51, 353, 471, 584, 696
MslI	CAYNNNNRTG	1 cut(s)	534
MspCI	CTTAAG	1 cut(s)	470
MspI	CCGG	2 cut(s)	614, 648
MspR9I	CCNGG	2 cut(s)	615, 649
Mva1269I	GAATGC	1 cut(s)	281
MwoI	GCNNNNNNNGC	3 cut(s)	17, 332, 421
NciI	CCSGG	2 cut(s)	615, 649
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	3 cut(s)	117, 200, 329
NlaIII	CATG	2 cut(s)	31, 299
NlaIV	GGNNCC	1 cut(s)	25
NsbI	TGCGCA	1 cut(s)	196
NsiI	ATGCAT	1 cut(s)	541
PceI	AGGCCT	1 cut(s)	239
PctI	GAATGC	1 cut(s)	281
PkrI	GCNGC	2 cut(s)	90, 679
PleI	GAGTC	1 cut(s)	533
PpsI	GAGTC	1 cut(s)	533
PspN4I	GGNNCC	1 cut(s)	25
PstNI	CAGNNNCTG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	200
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	5 cut(s)	51, 353, 471, 584, 696
SatI	GCNGC	2 cut(s)	89, 678
Sau3AI	GATC	3 cut(s)	117, 200, 329
SchI	GAGTC	1 cut(s)	534
ScrFI	CCNGG	2 cut(s)	615, 649
SduI	GDGCHC	3 cut(s)	328, 370, 395
SfaNI	GCATC	2 cut(s)	126, 526
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	2 cut(s)	230, 470
SmoI	CTYRAG	2 cut(s)	230, 470
SseBI	AGGCCT	1 cut(s)	239
SsiI	CCGC	2 cut(s)	11, 139
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	613, 647
StyI	CCWWGG	2 cut(s)	27, 240
TaaI	ACNGT	1 cut(s)	582
TaiI	ACGT	1 cut(s)	268
TaqI	TCGA	2 cut(s)	78, 285
Tru1I	TTAA	5 cut(s)	51, 353, 471, 584, 696
Tru9I	TTAA	5 cut(s)	51, 353, 471, 584, 696
TscAI	CASTG	1 cut(s)	505
TseI	GCWGC	2 cut(s)	88, 677
TspDTI	ATGAA	2 cut(s)	284, 416
TspRI	CASTG	1 cut(s)	505
Vha464I	CTTAAG	1 cut(s)	470
XapI	RAATTY	4 cut(s)	187, 206, 487, 691
Zsp2I	ATGCAT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.