Rh1CG022400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001468
Physical Location & Seq
Forward (+)
3961071 .. 3962585
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG022400.1

Sequence Viewer

Length: 660 bp
ATGTCAAGTGAGGCAGGCACCGTGAAGTACGAAAAGGTTTTGAAGCTCAAAGAGAAGCTTTCTGAATGCCGACTCCTAAGGAAGCAGCTCTTGAAAGAGAGAGAGATATGGAGGATCAAGGAGCGGAAAATAAAAGAACTACAAGAAGAACTCATAGTTGAAATAGAAGCGAATTCGCGTGCGACTTCTGAATTTGAAGAAGAAAAGAAGACACTTAAGGAGGCCTTGCAGGCCAAGAGGCAGAGTGTGCGTCAGGTCAAGAAGGCATTGGATGAATTTAATGCTAACCGAGATCGTGAATTCGCTTATAAGGGAGCACAACTAGCCAATGCCAGTGGCAGGTTTGATAGATTGCATGCTGAATTAGAAAAGAAAATTAATTGGTCAGAAGCAGAAGCAGAAGCAGAGAGAGAGAGAGATTATCTGGACAAGCTACAGTCAGAGATAGATGAGAAATGGGACAATTTAATTGCTTTTCTTGAGACTTGTCAGAAAAATTCAAAAATCACTGATGATGTGAAGCCTTGCCTCCGAGTCCACTATGATGCATACATTAAAACACTCAAGCGTGACGATGATGATTGTAAAATGTTAAAAAAATCTGCGATTGATCCTGAAAGAAAAGTCATCTTCCAGAGGGATAAAATTAGTCTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

25.95

Weight (kDa)

8.19

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
Acc36I ACCTGC 1 cut(s) 330
AccB1I GGYRCC 1 cut(s) 17
AccBSI CCGCTC 1 cut(s) 124
AccII CGCG 1 cut(s) 178
AciI CCGC 1 cut(s) 124
AclWI GGATC 2 cut(s) 122, 605
AcsI RAATTY 5 cut(s) 172, 191, 275, 299, 496
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 339
AflII CTTAAG 1 cut(s) 215
AgsI TTSAA 5 cut(s) 43, 94, 161, 197, 501
AluBI AGCT 4 cut(s) 46, 58, 88, 433
AluI AGCT 4 cut(s) 46, 58, 88, 433
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 1 cut(s) 476
AlwI GGATC 2 cut(s) 122, 605
AoxI GGCC 2 cut(s) 222, 231
ApeKI GCWGC 1 cut(s) 85
ApoI RAATTY 5 cut(s) 172, 191, 275, 299, 496
AseI ATTAAT 1 cut(s) 378
AxyI CCTNAGG 1 cut(s) 77
BanI GGYRCC 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 319
BbvI GCAGC 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 476
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 1 cut(s) 434
BfrI CTTAAG 1 cut(s) 215
BfuAI ACCTGC 1 cut(s) 330
BglI GCCNNNNNGGC 1 cut(s) 230
BisI GCNGC 1 cut(s) 86
BlsI GCNGC 1 cut(s) 87
BmiI GGNNCC 1 cut(s) 19
BmsI GCATC 1 cut(s) 535
BpiI GAAGAC 1 cut(s) 215
BpuEI CTTGAG 2 cut(s) 500, 548
Bsc4I CCNNNNNNNGG 1 cut(s) 339
Bse1I ACTGG 1 cut(s) 333
Bse21I CCTNAGG 1 cut(s) 77
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 333
BseXI GCAGC 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 178
BshFI GGCC 2 cut(s) 224, 233
BshNI GGYRCC 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 319
BslFI GGGAC 1 cut(s) 473
BslI CCNNNNNNNGG 1 cut(s) 339
BsmAI GTCTC 1 cut(s) 476
BsmFI GGGAC 1 cut(s) 473
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 2 cut(s) 224, 233
Bsp1286I GDGCHC 1 cut(s) 319
Bsp143I GATC 3 cut(s) 114, 292, 610
BspACI CCGC 1 cut(s) 124
BspANI GGCC 2 cut(s) 224, 233
BspFNI CGCG 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 19
BspMI ACCTGC 1 cut(s) 330
BspPI GGATC 2 cut(s) 122, 605
BspT107I GGYRCC 1 cut(s) 17
BspTI CTTAAG 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 124
BsrI ACTGG 1 cut(s) 333
BssMI GATC 3 cut(s) 114, 292, 610
Bst4CI ACNGT 2 cut(s) 22, 438
BstAFI CTTAAG 1 cut(s) 215
BstAPI GCANNNNNTGC 1 cut(s) 247
BstC8I GCNNGC 4 cut(s) 16, 180, 231, 357
BstDEI CTNAG 1 cut(s) 77
BstF5I GGATG 1 cut(s) 277
BstFNI CGCG 1 cut(s) 178
BstKTI GATC 3 cut(s) 117, 295, 613
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 3 cut(s) 114, 292, 610
BstMWI GCNNNNNNNGC 3 cut(s) 230, 247, 323
BstNSI RCATGY 1 cut(s) 359
BstSFI CTRYAG 1 cut(s) 434
BstUI CGCG 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 97
BstV2I GAAGAC 1 cut(s) 215
Bsu36I CCTNAGG 1 cut(s) 77
BsuRI GGCC 2 cut(s) 224, 233
BtsCI GGATG 1 cut(s) 277
BtsIMutI CAGTG 2 cut(s) 340, 507
BveI ACCTGC 1 cut(s) 330
Cac8I GCNNGC 4 cut(s) 16, 180, 231, 357
CseI GACGC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 28
CspCI CAANNNNNGTGG 2 cut(s) 316, 351
CviAII CATG 1 cut(s) 356
CviJI RGCY 8 cut(s) 46, 58, 88, 224, 233, 326, 433, 523
CviKI_1 RGCY 8 cut(s) 46, 58, 88, 224, 233, 326, 433, 523
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 1 cut(s) 77
DpnI GATC 3 cut(s) 116, 294, 612
DpnII GATC 3 cut(s) 114, 292, 610
Eco147I AGGCCT 1 cut(s) 224
Eco81I CCTNAGG 1 cut(s) 77
EcoRI GAATTC 2 cut(s) 172, 299
EcoT22I ATGCAT 1 cut(s) 550
FaeI CATG 1 cut(s) 359
FaiI YATR 6 cut(s) 109, 155, 309, 357, 543, 550
FalI AAGNNNNNCTT 6 cut(s) 42, 74, 74, 106, 209, 241
FaqI GGGAC 1 cut(s) 473
FatI CATG 1 cut(s) 355
Fnu4HI GCNGC 1 cut(s) 86
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 86
FspBI CTAG 1 cut(s) 323
GluI GCNGC 1 cut(s) 86
HaeIII GGCC 2 cut(s) 224, 233
HgaI GACGC 1 cut(s) 239
Hin1II CATG 1 cut(s) 359
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 2 cut(s) 72, 534
Hpy166II GTNNAC 1 cut(s) 538
Hpy188I TCNGA 6 cut(s) 64, 190, 388, 442, 492, 533
Hpy188III TCNNGA 8 cut(s) 91, 259, 296, 425, 479, 614, 634, 653
Hpy8I GTNNAC 1 cut(s) 538
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 2 cut(s) 22, 438
HpyCH4V TGCA 3 cut(s) 229, 355, 548
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 247, 323
HpyF3I CTNAG 1 cut(s) 77
Hsp92II CATG 1 cut(s) 359
Kzo9I GATC 3 cut(s) 114, 292, 610
LmnI GCTCC 2 cut(s) 121, 314
LpnPI CCDG 8 cut(s) 215, 239, 325, 346, 410, 627, 638, 647
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 1 cut(s) 535
MaeI CTAG 1 cut(s) 323
MaeIII GTNAC 1 cut(s) 569
MalI GATC 3 cut(s) 116, 294, 612
MbiI CCGCTC 1 cut(s) 124
MboI GATC 3 cut(s) 114, 292, 610
MboII GAAGA 5 cut(s) 158, 209, 212, 220, 622
MhlI GDGCHC 1 cut(s) 319
MlyI GAGTC 2 cut(s) 66, 543
MnlI CCTC 6 cut(s) 4, 105, 214, 231, 539, 630
Mph1103I ATGCAT 1 cut(s) 550
MseI TTAA 6 cut(s) 216, 279, 378, 467, 555, 593
MslI CAYNNNNRTG 1 cut(s) 543
MspCI CTTAAG 1 cut(s) 215
Mva1269I GAATGC 1 cut(s) 71
MvnI CGCG 1 cut(s) 178
MwoI GCNNNNNNNGC 3 cut(s) 230, 247, 323
NdeII GATC 3 cut(s) 114, 292, 610
NlaIII CATG 1 cut(s) 359
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 1 cut(s) 569
NsiI ATGCAT 1 cut(s) 550
NspI RCATGY 1 cut(s) 359
PaeI GCATGC 1 cut(s) 359
PceI AGGCCT 1 cut(s) 224
PctI GAATGC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 87
PleI GAGTC 2 cut(s) 66, 542
PpsI GAGTC 2 cut(s) 66, 542
PshBI ATTAAT 1 cut(s) 378
PsiI TTATAA 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 19
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
RseI CAYNNNNRTG 1 cut(s) 543
SaqAI TTAA 6 cut(s) 216, 279, 378, 467, 555, 593
SatI GCNGC 1 cut(s) 86
Sau3AI GATC 3 cut(s) 114, 292, 610
SchI GAGTC 2 cut(s) 66, 543
SduI GDGCHC 1 cut(s) 319
SetI ASST 7 cut(s) 39, 48, 60, 90, 258, 344, 435
SfaNI GCATC 1 cut(s) 535
SfcI CTRYAG 1 cut(s) 434
SfiI GGCCNNNNNGGCC 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 543
SmlI CTYRAG 3 cut(s) 215, 479, 563
SmoI CTYRAG 3 cut(s) 215, 479, 563
SphI GCATGC 1 cut(s) 359
SseBI AGGCCT 1 cut(s) 224
SsiI CCGC 1 cut(s) 124
SspMI CTAG 1 cut(s) 323
StuI AGGCCT 1 cut(s) 224
TaaI ACNGT 2 cut(s) 22, 438
Tru1I TTAA 6 cut(s) 216, 279, 378, 467, 555, 593
Tru9I TTAA 6 cut(s) 216, 279, 378, 467, 555, 593
TscAI CASTG 2 cut(s) 340, 514
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 1 cut(s) 288
TspRI CASTG 2 cut(s) 340, 514
Vha464I CTTAAG 1 cut(s) 215
VspI ATTAAT 1 cut(s) 378
XapI RAATTY 5 cut(s) 172, 191, 275, 299, 496
XceI RCATGY 1 cut(s) 359
XspI CTAG 1 cut(s) 323
Zsp2I ATGCAT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.