Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015213.1

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Forward (+)

39741 .. 41969

Gene Structure 2229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015213.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

atgtcggcggcggaggagacaggcaccatggacgaagaggttttgaggctcaaagagcagctttctcaatgcgaactccaaagggagctgctcctgacagagaaagagagctggatggccaaggagagacttgtcacgcaggaaaaagaagcagcagaagaaaagctcagagcttttatagaagcgactgcgagtgcaagatctgaatttgaaaaaaaaagaaagacactcaaggaggtcttggagaccaagaagaagagcgtgcatcagttaaataaggcaatcgatgagtttcttgctcgtcctgaggtgaattatatgggaaaacgaacacccaccatggagaagtttgatggattgattgctgaaatacgaaagaaaaaaatgtgcttacaagcagagacagaaaaggtggacaagctgcattcagagatattggagaaacgggacaatttatttgcttttcttaagacttgtgtgaaaaattcagaaatcactgacgatgtaaaacctgtgctccgactccactatgatgcatatgttgacacactcaagactgaggatgatgattgtgaaatgttaagaaagatgtcggcggcggaggagacaggcaccatggacgaagaggttttgaggctcaaagagcagctttctcaatgcgaactccaaagggagctgctcctgacagagaaagagagctggatagccaaggagagacttgtcacgcaggaaaaagaagcagcagaagaaaagctcagagcttttatagaagcgactgcgagtgcaagatctgaatttgaaaaaaaaagaaagacactcaaggaggtcttggagaccaagaagaagagcgtgcatcagttaaataaggcaatcgatgagtttcttgctcgtcctgaggtgaattatatgggaaaacgaacacccaccatggagaagtttgatggattgattgctgaaatacgaaagaaaaaaatgtgcttacaagcagagacagaaaaggtggacaagctgcattcagagatattggagaaacgggacaatttatttgcttttcttaagacttgtgtgaaaaattcagaaatcactgacgatgtaaaacctgtgctccgactccactatgatgcatatgttgacacactcaagactgaggatgatgattgtgaaatgttaagaaagtatgtgcattttattctgcaaccgtttgtcaggcttgactttacatctccaatttccgctgcaatgtcaaaattcttcaacttctttctaacaaaggagtccaacaaagatgctgagcataaacatcctgtaagagatgatgacgagtctgaacatcctgacgaagccacagtaggaaggaagcttttggactttatcataacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

460

Amino Acids

53.72

Weight (kDa)

5.61

Isoelectric Point (pI)

52.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	23, 611
AciI	CCGC	5 cut(s)	8, 11, 596, 599, 1233
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	5 cut(s)	206, 484, 794, 1072, 1247
AflII	CTTAAG	2 cut(s)	467, 1055
AgsI	TTSAA	3 cut(s)	212, 800, 1255
Alw21I	GWGCWC	2 cut(s)	519, 1107
Alw26I	GTCTC	8 cut(s)	11, 121, 239, 395, 599, 709, 827, 983
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	9 cut(s)	58, 88, 152, 421, 646, 676, 740, 1009, 1235
ApoI	RAATTY	5 cut(s)	206, 484, 794, 1072, 1247
ArsI	GACNNNNNNTTYG	4 cut(s)	440, 472, 1028, 1060
AsuHPI	GGTGA	2 cut(s)	322, 910
AxyI	CCTNAGG	2 cut(s)	306, 894
BalI	TGGCCA	1 cut(s)	119
BanI	GGYRCC	2 cut(s)	23, 611
Bbv12I	GWGCWC	2 cut(s)	519, 1107
BbvI	GCAGC	9 cut(s)	70, 75, 164, 408, 658, 663, 752, 996, 1222
BccI	CCATC	3 cut(s)	109, 347, 935
BcoDI	GTCTC	8 cut(s)	11, 121, 239, 395, 599, 709, 827, 983
BfrI	CTTAAG	2 cut(s)	467, 1055
BglII	AGATCT	2 cut(s)	200, 788
BlpI	GCTNAGC	1 cut(s)	1290
BmiI	GGNNCC	2 cut(s)	25, 613
BmsI	GCATC	5 cut(s)	274, 523, 862, 1111, 1276
Bpu1102I	GCTNAGC	1 cut(s)	1290
BpuEI	CTTGAG	4 cut(s)	215, 536, 803, 1124
Bsa29I	ATCGAT	2 cut(s)	285, 873
BsaI	GGTCTC	2 cut(s)	239, 827
BsaJI	CCNNGG	6 cut(s)	27, 120, 339, 615, 708, 927
BsaXI	ACNNNNNCTCC	4 cut(s)	501, 531, 1089, 1119
Bse21I	CCTNAGG	2 cut(s)	306, 894
Bse3DI	GCAATG	1 cut(s)	1245
BseCI	ATCGAT	2 cut(s)	285, 873
BseDI	CCNNGG	6 cut(s)	27, 120, 339, 615, 708, 927
BseGI	GGATG	5 cut(s)	120, 568, 1156, 1300, 1330
BseMI	GCAATG	1 cut(s)	1245
BseMII	CTCAG	7 cut(s)	181, 297, 549, 769, 885, 1137, 1281
BseRI	GAGGAG	2 cut(s)	29, 617
BseXI	GCAGC	9 cut(s)	70, 75, 164, 408, 658, 663, 752, 996, 1222
BshFI	GGCC	1 cut(s)	119
BshNI	GGYRCC	2 cut(s)	23, 611
BshVI	ATCGAT	2 cut(s)	285, 873
BsiHKAI	GWGCWC	2 cut(s)	519, 1107
BslFI	GGGAC	2 cut(s)	461, 1049
BsmAI	GTCTC	8 cut(s)	11, 121, 239, 395, 599, 709, 827, 983
BsmFI	GGGAC	2 cut(s)	461, 1049
BsmI	GAATGC	2 cut(s)	424, 1012
BsnI	GGCC	1 cut(s)	119
Bso31I	GGTCTC	2 cut(s)	239, 827
Bsp1286I	GDGCHC	2 cut(s)	519, 1107
Bsp143I	GATC	2 cut(s)	200, 788
Bsp1720I	GCTNAGC	1 cut(s)	1290
Bsp19I	CCATGG	4 cut(s)	27, 339, 615, 927
BspACI	CCGC	5 cut(s)	8, 11, 596, 599, 1233
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	7 cut(s)	180, 298, 550, 768, 886, 1138, 1282
BspDI	ATCGAT	2 cut(s)	285, 873
BspLI	GGNNCC	2 cut(s)	25, 613
BspQI	GCTCTTC	2 cut(s)	251, 839
BspT107I	GGYRCC	2 cut(s)	23, 611
BspTI	CTTAAG	2 cut(s)	467, 1055
BspTNI	GGTCTC	2 cut(s)	239, 827
BsrDI	GCAATG	1 cut(s)	1245
BssECI	CCNNGG	6 cut(s)	27, 120, 339, 615, 708, 927
BssMI	GATC	2 cut(s)	200, 788
BssT1I	CCWWGG	6 cut(s)	27, 120, 339, 615, 708, 927
Bst4CI	ACNGT	2 cut(s)	1200, 1348
Bst6I	CTCTTC	4 cut(s)	30, 251, 618, 839
BstAFI	CTTAAG	2 cut(s)	467, 1055
BstC8I	GCNNGC	2 cut(s)	263, 851
BstDEI	CTNAG	7 cut(s)	167, 306, 558, 755, 894, 1146, 1290
BstDSI	CCRYGG	4 cut(s)	27, 339, 615, 927
BstF5I	GGATG	5 cut(s)	120, 568, 1156, 1300, 1330
BstKTI	GATC	2 cut(s)	203, 791
BstMAI	GTCTC	8 cut(s)	11, 121, 239, 395, 599, 709, 827, 983
BstMBI	GATC	2 cut(s)	200, 788
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 643
BstV1I	GCAGC	9 cut(s)	70, 75, 164, 408, 658, 663, 752, 996, 1222
BstX2I	RGATCY	2 cut(s)	200, 788
BstYI	RGATCY	2 cut(s)	200, 788
Bsu15I	ATCGAT	2 cut(s)	285, 873
Bsu36I	CCTNAGG	2 cut(s)	306, 894
BsuRI	GGCC	1 cut(s)	119
BsuTUI	ATCGAT	2 cut(s)	285, 873
BtgI	CCRYGG	4 cut(s)	27, 339, 615, 927
BtsCI	GGATG	5 cut(s)	120, 568, 1156, 1300, 1330
BtsIMutI	CAGTG	2 cut(s)	495, 1083
Cac8I	GCNNGC	2 cut(s)	263, 851
ClaI	ATCGAT	2 cut(s)	285, 873
CviAII	CATG	4 cut(s)	28, 340, 616, 928
DdeI	CTNAG	7 cut(s)	167, 306, 558, 755, 894, 1146, 1290
DpnI	GATC	2 cut(s)	202, 790
DpnII	GATC	2 cut(s)	200, 788
EaeI	YGGCCR	1 cut(s)	117
Eam1104I	CTCTTC	4 cut(s)	30, 251, 618, 839
EarI	CTCTTC	4 cut(s)	30, 251, 618, 839
EciI	GGCGGA	2 cut(s)	26, 614
Eco130I	CCWWGG	6 cut(s)	27, 120, 339, 615, 708, 927
Eco31I	GGTCTC	2 cut(s)	239, 827
Eco81I	CCTNAGG	2 cut(s)	306, 894
EcoT14I	CCWWGG	6 cut(s)	27, 120, 339, 615, 708, 927
EcoT22I	ATGCAT	2 cut(s)	538, 1126
ErhI	CCWWGG	6 cut(s)	27, 120, 339, 615, 708, 927
FaeI	CATG	4 cut(s)	31, 343, 619, 931
FalI	AAGNNNNNCTT	8 cut(s)	45, 77, 224, 256, 633, 665, 812, 844
FaqI	GGGAC	2 cut(s)	461, 1049
FatI	CATG	4 cut(s)	27, 339, 615, 927
FauNDI	CATATG	2 cut(s)	538, 1126
FokI	GGATG	5 cut(s)	127, 575, 1163, 1287, 1317
HaeIII	GGCC	1 cut(s)	119
Hin1II	CATG	4 cut(s)	31, 343, 619, 931
HincII	GTYRAC	2 cut(s)	544, 1132
HindII	GTYRAC	2 cut(s)	544, 1132
HindIII	AAGCTT	1 cut(s)	1358
HinfI	GANTC	4 cut(s)	522, 1110, 1274, 1322
HphI	GGTGA	2 cut(s)	322, 910
Hpy166II	GTNNAC	4 cut(s)	415, 544, 1003, 1132
Hpy188III	TCNNGA	7 cut(s)	94, 305, 553, 682, 893, 1141, 1334
Hpy8I	GTNNAC	4 cut(s)	415, 544, 1003, 1132
HpyAV	CCTTC	1 cut(s)	1347
HpyCH4III	ACNGT	2 cut(s)	1200, 1348
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 643
HpyF3I	CTNAG	7 cut(s)	167, 306, 558, 755, 894, 1146, 1290
Hsp92II	CATG	4 cut(s)	31, 343, 619, 931
Kzo9I	GATC	2 cut(s)	200, 788
LguI	GCTCTTC	2 cut(s)	251, 839
LmnI	GCTCC	6 cut(s)	85, 96, 522, 673, 684, 1110
Lsp1109I	GCAGC	9 cut(s)	70, 75, 164, 408, 658, 663, 752, 996, 1222
LweI	GCATC	5 cut(s)	274, 523, 862, 1111, 1276
MaeIII	GTNAC	2 cut(s)	133, 721
MalI	GATC	2 cut(s)	202, 790
MboI	GATC	2 cut(s)	200, 788
MboII	GAAGA	9 cut(s)	47, 170, 265, 268, 635, 758, 853, 856, 1243
MflI	RGATCY	2 cut(s)	200, 788
MhlI	GDGCHC	2 cut(s)	519, 1107
MlsI	TGGCCA	1 cut(s)	119
MluNI	TGGCCA	1 cut(s)	119
MlyI	GAGTC	4 cut(s)	516, 1104, 1283, 1331
MmeI	TCCRAC	3 cut(s)	544, 1132, 1302
Mox20I	TGGCCA	1 cut(s)	119
Mph1103I	ATGCAT	2 cut(s)	538, 1126
MscI	TGGCCA	1 cut(s)	119
MseI	TTAA	6 cut(s)	272, 468, 581, 860, 1056, 1169
MslI	CAYNNNNRTG	2 cut(s)	531, 1119
Msp20I	TGGCCA	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	1235
MspCI	CTTAAG	2 cut(s)	467, 1055
Mva1269I	GAATGC	2 cut(s)	424, 1012
MwoI	GCNNNNNNNGC	2 cut(s)	55, 643
NcoI	CCATGG	4 cut(s)	27, 339, 615, 927
NdeI	CATATG	2 cut(s)	538, 1126
NdeII	GATC	2 cut(s)	200, 788
NlaIII	CATG	4 cut(s)	31, 343, 619, 931
NlaIV	GGNNCC	2 cut(s)	25, 613
NmuCI	GTSAC	2 cut(s)	133, 721
NsiI	ATGCAT	2 cut(s)	538, 1126
PciSI	GCTCTTC	2 cut(s)	251, 839
PctI	GAATGC	2 cut(s)	424, 1012
PleI	GAGTC	4 cut(s)	516, 1104, 1282, 1330
PpsI	GAGTC	4 cut(s)	516, 1104, 1282, 1330
PspN4I	GGNNCC	2 cut(s)	25, 613
PsuI	RGATCY	2 cut(s)	200, 788
RseI	CAYNNNNRTG	2 cut(s)	531, 1119
SapI	GCTCTTC	2 cut(s)	251, 839
SaqAI	TTAA	6 cut(s)	272, 468, 581, 860, 1056, 1169
Sau3AI	GATC	2 cut(s)	200, 788
SchI	GAGTC	4 cut(s)	516, 1104, 1283, 1331
SduI	GDGCHC	2 cut(s)	519, 1107
SfaNI	GCATC	5 cut(s)	274, 523, 862, 1111, 1276
SmiMI	CAYNNNNRTG	2 cut(s)	531, 1119
SmlI	CTYRAG	6 cut(s)	230, 467, 551, 818, 1055, 1139
SmoI	CTYRAG	6 cut(s)	230, 467, 551, 818, 1055, 1139
SsiI	CCGC	5 cut(s)	8, 11, 596, 599, 1233
StyI	CCWWGG	6 cut(s)	27, 120, 339, 615, 708, 927
TaaI	ACNGT	2 cut(s)	1200, 1348
TaqI	TCGA	2 cut(s)	285, 873
TauI	GCSGC	2 cut(s)	11, 599
Tru1I	TTAA	6 cut(s)	272, 468, 581, 860, 1056, 1169
Tru9I	TTAA	6 cut(s)	272, 468, 581, 860, 1056, 1169
TscAI	CASTG	2 cut(s)	502, 1090
TseFI	GTSAC	2 cut(s)	133, 721
TseI	GCWGC	9 cut(s)	58, 88, 152, 421, 646, 676, 740, 1009, 1235
Tsp45I	GTSAC	2 cut(s)	133, 721
TspRI	CASTG	2 cut(s)	502, 1090
Vha464I	CTTAAG	2 cut(s)	467, 1055
XapI	RAATTY	5 cut(s)	206, 484, 794, 1072, 1247
Zsp2I	ATGCAT	2 cut(s)	538, 1126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.