Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Forward (+)

2810432 .. 2811449

Gene Structure 1018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G001570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAGGCCGAAAAGGTTTTGAAGCTCAAAGAGAAGCTTTCTGAATGCCGACTCCTAAGGAAGCAGCTCTTGAAAGAGAGAGAGTTATGGAGGATCAAGGAGAGGAAAATAAAAGAACTACAAGAAGAACTCAGAGTTGAAATAGAAGCGAATTCGCGTGCGACTTCTGAATTTGAAGAAAAAAAGAAGACACTCAAGGAGGCCTTGCAGGCCAAGAGGCAGAGTGTGCGTCAGGTCAAGAAGGCATTGGATGAATTTAATGCTAACCGAGATCGTGAATTCGCTTATAAGGGAGCACAAATAGCCAATGCCAGTGGCAGGTTTGATAGATTGCATGCTGAATTAGGAAAGAAAATTAATTGGTCAGAAGCAGAAGCAGAGAGAGATTATCTGGACAAGCTACAGTCAGAGATAGATGAGAAATGGGACAATTTAATTGCTTTTCTTGAGACTTGTCGGAAAAATTCAAAAATCACTGATGATGTGAAGCCTTGCCTCCGAGTCCACTATGATGCATACATTAAAACACTCAAGAGTGACGATGATGATTGTAAAATGTTAAAAAAGTATGTGCATTTTGTTCTACGTACAACCGAGTTCTGCTCTAAACAGATGTTTGCCGGGGTTGATTTTATGTCTCCAATTTCTGCTGCAATATCAAACATTTTTAGCTTCTTCATAGGAAAAGAGACGAAGTCCAATAGTTCTCTTAGATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

28.07

Weight (kDa)

9.11

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	288
Acc36I	ACCTGC	1 cut(s)	309
AccII	CGCG	1 cut(s)	157
AclWI	GGATC	2 cut(s)	101, 708
AcsI	RAATTY	5 cut(s)	151, 170, 254, 278, 463
AfaI	GTAC	1 cut(s)	589
AfiI	CCNNNNNNNGG	1 cut(s)	318
AgsI	TTSAA	5 cut(s)	22, 73, 140, 176, 468
AluBI	AGCT	5 cut(s)	25, 37, 67, 400, 672
AluI	AGCT	5 cut(s)	25, 37, 67, 400, 672
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	3 cut(s)	443, 642, 683
AlwI	GGATC	2 cut(s)	101, 708
AoxI	GGCC	3 cut(s)	6, 201, 210
ApeKI	GCWGC	2 cut(s)	64, 650
ApoI	RAATTY	5 cut(s)	151, 170, 254, 278, 463
AseI	ATTAAT	1 cut(s)	357
AsuC2I	CCSGG	1 cut(s)	622
AxyI	CCTNAGG	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	2 cut(s)	76, 637
BcnI	CCSGG	1 cut(s)	622
BcoDI	GTCTC	3 cut(s)	443, 642, 683
BfmI	CTRYAG	1 cut(s)	401
BfuAI	ACCTGC	1 cut(s)	309
BglI	GCCNNNNNGGC	1 cut(s)	209
BisI	GCNGC	2 cut(s)	65, 651
BlsI	GCNGC	2 cut(s)	66, 652
Bme1390I	CCNGG	1 cut(s)	622
BmrFI	CCNGG	1 cut(s)	622
BmsI	GCATC	1 cut(s)	502
BpiI	GAAGAC	1 cut(s)	194
BplI	GAGNNNNNCTC	2 cut(s)	587, 619
BpuEI	CTTGAG	3 cut(s)	179, 467, 515
BpuMI	CCSGG	1 cut(s)	622
BsaAI	YACGTR	1 cut(s)	587
BsaJI	CCNNGG	1 cut(s)	621
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
Bse1I	ACTGG	1 cut(s)	312
Bse21I	CCTNAGG	1 cut(s)	56
BseDI	CCNNGG	1 cut(s)	621
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	145
BseNI	ACTGG	1 cut(s)	312
BseXI	GCAGC	2 cut(s)	76, 637
Bsh1236I	CGCG	1 cut(s)	157
BshFI	GGCC	3 cut(s)	8, 203, 212
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	621
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	1 cut(s)	318
BsmAI	GTCTC	3 cut(s)	443, 642, 683
BsmBI	CGTCTC	1 cut(s)	683
BsmFI	GGGAC	1 cut(s)	440
BsmI	GAATGC	1 cut(s)	50
BsnI	GGCC	3 cut(s)	8, 203, 212
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	3 cut(s)	93, 271, 713
BspANI	GGCC	3 cut(s)	8, 203, 212
BspCNI	CTCAG	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	157
BspMI	ACCTGC	1 cut(s)	309
BspPI	GGATC	2 cut(s)	101, 708
BsrI	ACTGG	1 cut(s)	312
BssECI	CCNNGG	1 cut(s)	621
BssMI	GATC	3 cut(s)	93, 271, 713
Bst4CI	ACNGT	1 cut(s)	405
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstBAI	YACGTR	1 cut(s)	587
BstC8I	GCNNGC	3 cut(s)	159, 210, 336
BstDEI	CTNAG	3 cut(s)	56, 131, 710
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	1 cut(s)	157
BstKTI	GATC	3 cut(s)	96, 274, 716
BstMAI	GTCTC	3 cut(s)	443, 642, 683
BstMBI	GATC	3 cut(s)	93, 271, 713
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 226, 302
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	620
BstSFI	CTRYAG	1 cut(s)	401
BstSNI	TACGTA	1 cut(s)	587
BstUI	CGCG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	76, 637
BstV2I	GAAGAC	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	713
BstYI	RGATCY	1 cut(s)	713
Bsu36I	CCTNAGG	1 cut(s)	56
BsuRI	GGCC	3 cut(s)	8, 203, 212
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	2 cut(s)	319, 474
BveI	ACCTGC	1 cut(s)	309
Cac8I	GCNNGC	3 cut(s)	159, 210, 336
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	588
CspCI	CAANNNNNGTGG	2 cut(s)	295, 330
CviAII	CATG	1 cut(s)	335
CviQI	GTAC	1 cut(s)	588
DdeI	CTNAG	3 cut(s)	56, 131, 710
DpnI	GATC	3 cut(s)	95, 273, 715
DpnII	GATC	3 cut(s)	93, 271, 713
Eco105I	TACGTA	1 cut(s)	587
Eco147I	AGGCCT	1 cut(s)	203
Eco81I	CCTNAGG	1 cut(s)	56
EcoRI	GAATTC	2 cut(s)	151, 278
EcoT22I	ATGCAT	1 cut(s)	517
Esp3I	CGTCTC	1 cut(s)	683
FaeI	CATG	1 cut(s)	338
FaiI	YATR	8 cut(s)	88, 288, 336, 510, 517, 570, 635, 680
FalI	AAGNNNNNCTT	6 cut(s)	21, 53, 53, 85, 188, 220
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	65, 651
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	2 cut(s)	65, 651
GluI	GCNGC	2 cut(s)	65, 651
HaeIII	GGCC	3 cut(s)	8, 203, 212
HapII	CCGG	1 cut(s)	621
HgaI	GACGC	1 cut(s)	218
Hin1II	CATG	1 cut(s)	338
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	2 cut(s)	51, 501
HpaII	CCGG	1 cut(s)	621
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	7 cut(s)	43, 134, 169, 367, 409, 459, 500
Hpy188III	TCNNGA	6 cut(s)	70, 238, 275, 392, 446, 532
Hpy8I	GTNNAC	1 cut(s)	505
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	1 cut(s)	405
HpyCH4IV	ACGT	1 cut(s)	586
HpyCH4V	TGCA	5 cut(s)	208, 334, 515, 574, 653
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 226, 302
HpyF3I	CTNAG	3 cut(s)	56, 131, 710
HpySE526I	ACGT	1 cut(s)	586
Hsp92II	CATG	1 cut(s)	338
Kzo9I	GATC	3 cut(s)	93, 271, 713
LmnI	GCTCC	1 cut(s)	293
LpnPI	CCDG	6 cut(s)	194, 218, 304, 325, 377, 634
Lsp1109I	GCAGC	2 cut(s)	76, 637
LweI	GCATC	1 cut(s)	502
MaeII	ACGT	1 cut(s)	586
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	3 cut(s)	95, 273, 715
MboI	GATC	3 cut(s)	93, 271, 713
MboII	GAAGA	4 cut(s)	137, 188, 199, 667
MflI	RGATCY	1 cut(s)	713
MhlI	GDGCHC	1 cut(s)	298
MlyI	GAGTC	2 cut(s)	45, 510
MmeI	TCCRAC	1 cut(s)	437
MnlI	CCTC	5 cut(s)	84, 96, 193, 210, 506
Mph1103I	ATGCAT	1 cut(s)	517
MseI	TTAA	5 cut(s)	258, 357, 434, 522, 560
MslI	CAYNNNNRTG	1 cut(s)	510
MspI	CCGG	1 cut(s)	621
MspR9I	CCNGG	1 cut(s)	622
Mva1269I	GAATGC	1 cut(s)	50
MvnI	CGCG	1 cut(s)	157
MwoI	GCNNNNNNNGC	3 cut(s)	209, 226, 302
NciI	CCSGG	1 cut(s)	622
NdeII	GATC	3 cut(s)	93, 271, 713
NlaIII	CATG	1 cut(s)	338
NmuCI	GTSAC	1 cut(s)	536
NsiI	ATGCAT	1 cut(s)	517
NspI	RCATGY	1 cut(s)	338
PaeI	GCATGC	1 cut(s)	338
PceI	AGGCCT	1 cut(s)	203
PctI	GAATGC	1 cut(s)	50
PflFI	GACNNNGTC	1 cut(s)	694
PkrI	GCNGC	2 cut(s)	66, 652
PleI	GAGTC	2 cut(s)	45, 509
PpsI	GAGTC	2 cut(s)	45, 509
Ppu21I	YACGTR	1 cut(s)	587
PshBI	ATTAAT	1 cut(s)	357
PsiI	TTATAA	1 cut(s)	288
PsuI	RGATCY	1 cut(s)	713
PsyI	GACNNNGTC	1 cut(s)	694
RsaI	GTAC	1 cut(s)	589
RsaNI	GTAC	1 cut(s)	588
RseI	CAYNNNNRTG	1 cut(s)	510
SaqAI	TTAA	5 cut(s)	258, 357, 434, 522, 560
SatI	GCNGC	2 cut(s)	65, 651
Sau3AI	GATC	3 cut(s)	93, 271, 713
SchI	GAGTC	2 cut(s)	45, 510
ScrFI	CCNGG	1 cut(s)	622
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	9 cut(s)	18, 27, 39, 69, 237, 323, 402, 589, 674
SfaNI	GCATC	1 cut(s)	502
SfcI	CTRYAG	1 cut(s)	401
SfiI	GGCCNNNNNGGCC	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	3 cut(s)	194, 446, 530
SmoI	CTYRAG	3 cut(s)	194, 446, 530
SnaBI	TACGTA	1 cut(s)	587
SphI	GCATGC	1 cut(s)	338
SseBI	AGGCCT	1 cut(s)	203
StuI	AGGCCT	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	620
TaaI	ACNGT	1 cut(s)	405
TaiI	ACGT	1 cut(s)	589
Tru1I	TTAA	5 cut(s)	258, 357, 434, 522, 560
Tru9I	TTAA	5 cut(s)	258, 357, 434, 522, 560
TscAI	CASTG	2 cut(s)	319, 481
TseFI	GTSAC	1 cut(s)	536
TseI	GCWGC	2 cut(s)	64, 650
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	2 cut(s)	267, 667
TspRI	CASTG	2 cut(s)	319, 481
Tth111I	GACNNNGTC	1 cut(s)	694
VspI	ATTAAT	1 cut(s)	357
XapI	RAATTY	5 cut(s)	151, 170, 254, 278, 463
XceI	RCATGY	1 cut(s)	338
Zsp2I	ATGCAT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.