Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Forward (+)

4132582 .. 4252987

Gene Structure 120406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG022700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTCGGCGGCGGAGGAGACAGGCACCATGGACGAAGAGGTTTTGAGGCTCAAAGAGCAGCTCTCTCAATGCGAACTCCAAAGGGAGCTGCTCCAGACAGAGAAAGAGAGCTGGATGGCCAAGGAGAGACTTGTCACGCAGGAAAAAGAAGCAGCAGAAGAAAAGCTCAGAGATTTTATAGAAGCGACTTCGAGTGCAAGATCTGAATTTGAAAAAAAAAAAAAGACACTCAAGGAGGCCTTGGAGACCAAGAAGAAGAGCGTGCATCAGCTGCGTAAGGCTATCAAAGAGTTTCTTGCTCGTCCTGATGTGGGTTATATGGGAAAACAAACACCCGTCATGGAGAAGTTTGATGGATTGATTGCTGAACTACGAAAGAAAAAAATGTGCTTACAAGCAGAGACAGATAAGGTGGACAAGCTACATTCAGAGATATTGGAGAAACGGGACAATTTATTTGCTTTTCTTAAGACTTGTGTGAAAAATTCAGAAATCACTGACGATGTAAAACCTGTGCTCCGACTCCACTATGATGCATATGTTGACACTCTCAAGACTGAGGATGATGATTGTGAAATGTTAAGAAAGTATGTGCATTTTATTCTGCAACCGTTTGTCAGGCTTGACTTTAAATCTCCAATTTCCGCTGCAATGTCTAAATTCTTCAACTTCTTTCTAACAAAGGAGTCCGACAAAGATGCTGAGGTGATATGTTTCTCTCTTTCTCATTGTACATGTTTTTGGTTTTTATTAAGAACTGAGAAGTTGGTTTTTGAAAGTGGCATAGCTGACTTTCTGATGTGCTTTTTCTTTTTTACTAGTGAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

276

Amino Acids

32.29

Weight (kDa)

5.75

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	23
AciI	CCGC	3 cut(s)	8, 11, 645
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	3 cut(s)	206, 484, 659
AfaI	GTAC	1 cut(s)	733
AfiI	CCNNNNNNNGG	1 cut(s)	311
AflII	CTTAAG	1 cut(s)	467
AflIII	ACRYGT	1 cut(s)	734
AgsI	TTSAA	3 cut(s)	212, 667, 776
AhlI	ACTAGT	1 cut(s)	818
AluBI	AGCT	7 cut(s)	61, 88, 111, 166, 271, 421, 788
AluI	AGCT	7 cut(s)	61, 88, 111, 166, 271, 421, 788
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	4 cut(s)	11, 121, 239, 395
AoxI	GGCC	2 cut(s)	117, 237
ApeKI	GCWGC	5 cut(s)	58, 88, 152, 271, 647
ApoI	RAATTY	3 cut(s)	206, 484, 659
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
AsuHPI	GGTGA	1 cut(s)	718
BalI	TGGCCA	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	519
BbvCI	CCTCAGC	1 cut(s)	702
BbvI	GCAGC	5 cut(s)	70, 75, 164, 258, 634
BccI	CCATC	2 cut(s)	109, 347
BcgI	CGANNNNNNTGC	2 cut(s)	680, 714
BcoDI	GTCTC	4 cut(s)	11, 121, 239, 395
BcuI	ACTAGT	1 cut(s)	818
BfaI	CTAG	1 cut(s)	819
BfrI	CTTAAG	1 cut(s)	467
BglII	AGATCT	1 cut(s)	200
BisI	GCNGC	6 cut(s)	9, 59, 89, 153, 272, 648
BlsI	GCNGC	6 cut(s)	10, 60, 90, 154, 273, 649
BmiI	GGNNCC	1 cut(s)	25
BmsI	GCATC	3 cut(s)	274, 523, 688
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
BpmI	CTGGAG	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	702
BpuEI	CTTGAG	2 cut(s)	215, 536
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	3 cut(s)	27, 120, 240
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse3DI	GCAATG	1 cut(s)	657
BseDI	CCNNGG	3 cut(s)	27, 120, 240
BseGI	GGATG	2 cut(s)	120, 568
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	4 cut(s)	181, 549, 693, 750
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	5 cut(s)	70, 75, 164, 258, 634
BshFI	GGCC	2 cut(s)	119, 239
BshNI	GGYRCC	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	519
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmAI	GTCTC	4 cut(s)	11, 121, 239, 395
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	2 cut(s)	119, 239
Bso31I	GGTCTC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp1407I	TGTACA	1 cut(s)	731
Bsp143I	GATC	1 cut(s)	200
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	3 cut(s)	8, 11, 645
BspANI	GGCC	2 cut(s)	119, 239
BspCNI	CTCAG	4 cut(s)	180, 550, 694, 751
BspLI	GGNNCC	1 cut(s)	25
BspQI	GCTCTTC	1 cut(s)	251
BspT107I	GGYRCC	1 cut(s)	23
BspTI	CTTAAG	1 cut(s)	467
BspTNI	GGTCTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	657
BsrGI	TGTACA	1 cut(s)	731
BssECI	CCNNGG	3 cut(s)	27, 120, 240
BssMI	GATC	1 cut(s)	200
BssT1I	CCWWGG	3 cut(s)	27, 120, 240
Bst4CI	ACNGT	1 cut(s)	612
Bst6I	CTCTTC	2 cut(s)	30, 251
BstAFI	CTTAAG	1 cut(s)	467
BstAPI	GCANNNNNTGC	1 cut(s)	271
BstAUI	TGTACA	1 cut(s)	731
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	4 cut(s)	167, 558, 702, 759
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	120, 568
BstKTI	GATC	1 cut(s)	203
BstMAI	GTCTC	4 cut(s)	11, 121, 239, 395
BstMBI	GATC	1 cut(s)	200
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 271
BstNSI	RCATGY	1 cut(s)	738
BstV1I	GCAGC	5 cut(s)	70, 75, 164, 258, 634
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
BsuRI	GGCC	2 cut(s)	119, 239
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	2 cut(s)	120, 568
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	732
CviAII	CATG	3 cut(s)	28, 340, 735
CviQI	GTAC	1 cut(s)	732
DdeI	CTNAG	4 cut(s)	167, 558, 702, 759
DpnI	GATC	1 cut(s)	202
DpnII	GATC	1 cut(s)	200
DraI	TTTAAA	1 cut(s)	631
EaeI	YGGCCR	1 cut(s)	117
Eam1104I	CTCTTC	2 cut(s)	30, 251
EarI	CTCTTC	2 cut(s)	30, 251
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	3 cut(s)	27, 120, 240
Eco147I	AGGCCT	1 cut(s)	239
Eco31I	GGTCTC	1 cut(s)	239
EcoT14I	CCWWGG	3 cut(s)	27, 120, 240
EcoT22I	ATGCAT	1 cut(s)	538
ErhI	CCWWGG	3 cut(s)	27, 120, 240
FaeI	CATG	3 cut(s)	31, 343, 738
FalI	AAGNNNNNCTT	4 cut(s)	224, 256, 279, 311
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	3 cut(s)	27, 339, 734
FauNDI	CATATG	1 cut(s)	538
Fnu4HI	GCNGC	6 cut(s)	9, 59, 89, 153, 272, 648
FokI	GGATG	2 cut(s)	127, 575
Fsp4HI	GCNGC	6 cut(s)	9, 59, 89, 153, 272, 648
FspBI	CTAG	1 cut(s)	819
GluI	GCNGC	6 cut(s)	9, 59, 89, 153, 272, 648
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	2 cut(s)	119, 239
Hin1II	CATG	3 cut(s)	31, 343, 738
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HinfI	GANTC	2 cut(s)	522, 686
HphI	GGTGA	1 cut(s)	718
Hpy166II	GTNNAC	2 cut(s)	415, 544
Hpy188I	TCNGA	7 cut(s)	170, 205, 430, 490, 521, 691, 798
Hpy188III	TCNNGA	3 cut(s)	94, 305, 553
Hpy8I	GTNNAC	2 cut(s)	415, 544
HpyCH4III	ACNGT	1 cut(s)	612
HpyCH4V	TGCA	6 cut(s)	197, 265, 536, 595, 607, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 271
HpyF3I	CTNAG	4 cut(s)	167, 558, 702, 759
Hsp92II	CATG	3 cut(s)	31, 343, 738
Kzo9I	GATC	1 cut(s)	200
LguI	GCTCTTC	1 cut(s)	251
LmnI	GCTCC	3 cut(s)	85, 96, 522
LpnPI	CCDG	7 cut(s)	6, 97, 107, 125, 318, 525, 604
Lsp1109I	GCAGC	5 cut(s)	70, 75, 164, 258, 634
LweI	GCATC	3 cut(s)	274, 523, 688
MaeI	CTAG	1 cut(s)	819
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	1 cut(s)	202
MboI	GATC	1 cut(s)	200
MboII	GAAGA	5 cut(s)	47, 170, 265, 268, 655
MflI	RGATCY	1 cut(s)	200
MhlI	GDGCHC	1 cut(s)	519
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	5 cut(s)	206, 451, 484, 639, 659
MluNI	TGGCCA	1 cut(s)	119
MlyI	GAGTC	2 cut(s)	516, 695
MmeI	TCCRAC	2 cut(s)	544, 714
MnlI	CCTC	6 cut(s)	7, 31, 39, 229, 553, 697
Mox20I	TGGCCA	1 cut(s)	119
Mph1103I	ATGCAT	1 cut(s)	538
MscI	TGGCCA	1 cut(s)	119
MseI	TTAA	4 cut(s)	468, 581, 630, 752
MslI	CAYNNNNRTG	1 cut(s)	531
Msp20I	TGGCCA	1 cut(s)	119
MspA1I	CMGCKG	2 cut(s)	271, 647
MspCI	CTTAAG	1 cut(s)	467
MwoI	GCNNNNNNNGC	2 cut(s)	55, 271
NcoI	CCATGG	1 cut(s)	27
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	1 cut(s)	200
NlaIII	CATG	3 cut(s)	31, 343, 738
NlaIV	GGNNCC	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	133
NsiI	ATGCAT	1 cut(s)	538
NspI	RCATGY	1 cut(s)	738
PceI	AGGCCT	1 cut(s)	239
PciI	ACATGT	1 cut(s)	734
PciSI	GCTCTTC	1 cut(s)	251
PkrI	GCNGC	6 cut(s)	10, 60, 90, 154, 273, 649
PleI	GAGTC	2 cut(s)	516, 694
PpsI	GAGTC	2 cut(s)	516, 694
PscI	ACATGT	1 cut(s)	734
PspN4I	GGNNCC	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	200
PvuII	CAGCTG	1 cut(s)	271
RsaI	GTAC	1 cut(s)	733
RsaNI	GTAC	1 cut(s)	732
RseI	CAYNNNNRTG	1 cut(s)	531
SapI	GCTCTTC	1 cut(s)	251
SaqAI	TTAA	4 cut(s)	468, 581, 630, 752
SatI	GCNGC	6 cut(s)	9, 59, 89, 153, 272, 648
Sau3AI	GATC	1 cut(s)	200
SchI	GAGTC	2 cut(s)	516, 695
SduI	GDGCHC	1 cut(s)	519
SfaNI	GCATC	3 cut(s)	274, 523, 688
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	3 cut(s)	230, 467, 551
SmoI	CTYRAG	3 cut(s)	230, 467, 551
SpeI	ACTAGT	1 cut(s)	818
Sse9I	AATT	5 cut(s)	206, 451, 484, 639, 659
SseBI	AGGCCT	1 cut(s)	239
SsiI	CCGC	3 cut(s)	8, 11, 645
SspMI	CTAG	1 cut(s)	819
StuI	AGGCCT	1 cut(s)	239
StyI	CCWWGG	3 cut(s)	27, 120, 240
TaaI	ACNGT	1 cut(s)	612
TaqI	TCGA	1 cut(s)	191
TasI	AATT	5 cut(s)	206, 451, 484, 639, 659
TatI	WGTACW	1 cut(s)	731
TauI	GCSGC	1 cut(s)	11
Tru1I	TTAA	4 cut(s)	468, 581, 630, 752
Tru9I	TTAA	4 cut(s)	468, 581, 630, 752
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	5 cut(s)	58, 88, 152, 271, 647
Tsp45I	GTSAC	1 cut(s)	133
TspRI	CASTG	1 cut(s)	502
Vha464I	CTTAAG	1 cut(s)	467
XapI	RAATTY	3 cut(s)	206, 484, 659
XceI	RCATGY	1 cut(s)	738
XspI	CTAG	1 cut(s)	819
Zsp2I	ATGCAT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.