Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Reverse (-)

2296677 .. 2298418

Gene Structure 1742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G001360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGACGACGAAAAGGTTTTGAAGCTCAAAGAGAAGCTTTCTGAACGCCGACTCCAAAGGAAGCAGCTCTTGAAAGAGAGAGAGATATGGAGGATCAAGGAGCGGAAAATAAAAGAACTACAAGAAGAACTCAGAGTTGAAATAGAAGCGAATTCGCGTGCGACTTCTGAATTTGAAGAAAAAAAGAAGACACTCAAGGAGGCCTTGCAGGCCAAGAGGCAGAGTGTACGTCAGGTCAAGAAGGCATTGGATGAATTTAATGCTAACCGAGATCGTGAATTCCCTTATAAGGGAGCACAAACAGCCAATGCCAGTGACAGGTTTGATAGATTGCATGCTGAATTAGAAAAGAAAATTAAGTGGTCACAAGCAGAGAGAGATAATCTGGACAAGCTACAGTCAAAGATAGATGAGAAATGGGACAATTTAATTGCTTTTCTTGAGACTTGTCGGAAAAATTCAAAAATCACTAATGATGTGAAGCCTTGCCTCCGAGTCCACTATGATGCATACATTAAAACACTCAAGACTGACGATGATGATTGTAAAATGTTAAAAAAGTATGTGCATTTTGTTCTACAACCGAGTTCTGCTCAGAAGCAAAATGAGATGTTTGCCGGGGTTGATTTTATATCTCCAATTTCTGCTGCAGTATCAAAAATTTTTAACTTCTTCATAGGAAAAGAGAGGAAGTCCAATAGTTCTCTTATATATAACAGAAGCTCTACCGACAGAGATCCTAAGGTAATAATTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

252

Amino Acids

29.79

Weight (kDa)

9.49

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	288
AccBSI	CCGCTC	1 cut(s)	103
AccII	CGCG	1 cut(s)	157
AciI	CCGC	1 cut(s)	103
AclWI	GGATC	2 cut(s)	101, 731
AcsI	RAATTY	6 cut(s)	151, 170, 254, 278, 457, 660
AfaI	GTAC	1 cut(s)	228
AfiI	CCNNNNNNNGG	3 cut(s)	289, 290, 318
AgsI	TTSAA	5 cut(s)	22, 73, 140, 176, 462
AloI	GAACNNNNNNTCC	2 cut(s)	36, 68
AluBI	AGCT	5 cut(s)	25, 37, 67, 394, 723
AluI	AGCT	5 cut(s)	25, 37, 67, 394, 723
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	437
AlwI	GGATC	2 cut(s)	101, 731
AoxI	GGCC	2 cut(s)	201, 210
ApeKI	GCWGC	2 cut(s)	64, 647
ApoI	RAATTY	6 cut(s)	151, 170, 254, 278, 457, 660
AsuC2I	CCSGG	1 cut(s)	619
AxyI	CCTNAGG	1 cut(s)	741
BbsI	GAAGAC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	2 cut(s)	76, 634
BcnI	CCSGG	1 cut(s)	619
BcoDI	GTCTC	1 cut(s)	437
BfaI	CTAG	1 cut(s)	757
BfmI	CTRYAG	2 cut(s)	395, 648
BglI	GCCNNNNNGGC	1 cut(s)	209
BisI	GCNGC	2 cut(s)	65, 648
BlsI	GCNGC	2 cut(s)	66, 649
Bme1390I	CCNGG	1 cut(s)	619
BmrFI	CCNGG	1 cut(s)	619
BmsI	GCATC	1 cut(s)	496
BpiI	GAAGAC	1 cut(s)	194
BplI	GAGNNNNNCTC	2 cut(s)	577, 609
BpuEI	CTTGAG	3 cut(s)	179, 461, 509
BpuMI	CCSGG	1 cut(s)	619
BsaJI	CCNNGG	1 cut(s)	618
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bsc4I	CCNNNNNNNGG	3 cut(s)	289, 290, 318
Bse1I	ACTGG	1 cut(s)	312
Bse21I	CCTNAGG	1 cut(s)	741
BseDI	CCNNGG	1 cut(s)	618
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	3 cut(s)	289, 290, 318
BseMII	CTCAG	2 cut(s)	145, 608
BseNI	ACTGG	1 cut(s)	312
BseXI	GCAGC	2 cut(s)	76, 634
Bsh1236I	CGCG	1 cut(s)	157
BshFI	GGCC	2 cut(s)	203, 212
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	618
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	3 cut(s)	289, 290, 318
BsmAI	GTCTC	1 cut(s)	437
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	2 cut(s)	203, 212
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	3 cut(s)	93, 271, 736
BspACI	CCGC	1 cut(s)	103
BspANI	GGCC	2 cut(s)	203, 212
BspCNI	CTCAG	2 cut(s)	144, 607
BspFNI	CGCG	1 cut(s)	157
BspMAI	CTGCAG	1 cut(s)	652
BspPI	GGATC	2 cut(s)	101, 731
BsrBI	CCGCTC	1 cut(s)	103
BsrI	ACTGG	1 cut(s)	312
BssECI	CCNNGG	1 cut(s)	618
BssMI	GATC	3 cut(s)	93, 271, 736
Bst4CI	ACNGT	1 cut(s)	399
BstC8I	GCNNGC	3 cut(s)	159, 210, 336
BstDEI	CTNAG	3 cut(s)	131, 594, 741
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	1 cut(s)	157
BstKTI	GATC	3 cut(s)	96, 274, 739
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	3 cut(s)	93, 271, 736
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 302
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	617
BstSFI	CTRYAG	2 cut(s)	395, 648
BstUI	CGCG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	76, 634
BstV2I	GAAGAC	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	736
BstYI	RGATCY	1 cut(s)	736
Bsu36I	CCTNAGG	1 cut(s)	741
BsuRI	GGCC	2 cut(s)	203, 212
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	319
Cac8I	GCNNGC	3 cut(s)	159, 210, 336
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	1 cut(s)	335
CviJI	RGCY	9 cut(s)	25, 37, 67, 203, 212, 305, 394, 484, 723
CviKI_1	RGCY	9 cut(s)	25, 37, 67, 203, 212, 305, 394, 484, 723
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	3 cut(s)	131, 594, 741
DpnI	GATC	3 cut(s)	95, 273, 738
DpnII	GATC	3 cut(s)	93, 271, 736
Eco147I	AGGCCT	1 cut(s)	203
Eco81I	CCTNAGG	1 cut(s)	741
EcoRI	GAATTC	2 cut(s)	151, 278
EcoT22I	ATGCAT	1 cut(s)	511
FaeI	CATG	1 cut(s)	338
FalI	AAGNNNNNCTT	6 cut(s)	21, 53, 53, 85, 188, 220
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	65, 648
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	2 cut(s)	65, 648
FspBI	CTAG	1 cut(s)	757
GluI	GCNGC	2 cut(s)	65, 648
HaeIII	GGCC	2 cut(s)	203, 212
HapII	CCGG	1 cut(s)	618
Hin1II	CATG	1 cut(s)	338
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	2 cut(s)	51, 495
HpaII	CCGG	1 cut(s)	618
Hpy166II	GTNNAC	2 cut(s)	227, 499
Hpy188I	TCNGA	6 cut(s)	43, 134, 169, 453, 494, 597
Hpy188III	TCNNGA	6 cut(s)	70, 238, 275, 386, 440, 526
Hpy8I	GTNNAC	2 cut(s)	227, 499
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	1 cut(s)	399
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	5 cut(s)	208, 334, 509, 568, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 302
HpyF3I	CTNAG	3 cut(s)	131, 594, 741
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	1 cut(s)	338
Kzo9I	GATC	3 cut(s)	93, 271, 736
LmnI	GCTCC	2 cut(s)	100, 293
LpnPI	CCDG	6 cut(s)	194, 218, 304, 325, 371, 631
Lsp1109I	GCAGC	2 cut(s)	76, 634
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	1 cut(s)	757
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	2 cut(s)	314, 363
MalI	GATC	3 cut(s)	95, 273, 738
MbiI	CCGCTC	1 cut(s)	103
MboI	GATC	3 cut(s)	93, 271, 736
MboII	GAAGA	4 cut(s)	137, 188, 199, 664
MflI	RGATCY	1 cut(s)	736
MhlI	GDGCHC	1 cut(s)	298
MlyI	GAGTC	2 cut(s)	45, 504
MmeI	TCCRAC	1 cut(s)	431
MnlI	CCTC	5 cut(s)	84, 193, 210, 500, 681
Mph1103I	ATGCAT	1 cut(s)	511
MseI	TTAA	6 cut(s)	258, 357, 428, 516, 554, 666
MslI	CAYNNNNRTG	1 cut(s)	504
MspI	CCGG	1 cut(s)	618
MspR9I	CCNGG	1 cut(s)	619
MvnI	CGCG	1 cut(s)	157
MwoI	GCNNNNNNNGC	2 cut(s)	209, 302
NciI	CCSGG	1 cut(s)	619
NdeII	GATC	3 cut(s)	93, 271, 736
NlaIII	CATG	1 cut(s)	338
NmuCI	GTSAC	2 cut(s)	314, 363
NsiI	ATGCAT	1 cut(s)	511
NspI	RCATGY	1 cut(s)	338
PaeI	GCATGC	1 cut(s)	338
PceI	AGGCCT	1 cut(s)	203
PkrI	GCNGC	2 cut(s)	66, 649
PleI	GAGTC	2 cut(s)	45, 503
PpsI	GAGTC	2 cut(s)	45, 503
PsiI	TTATAA	1 cut(s)	288
PstI	CTGCAG	1 cut(s)	652
PsuI	RGATCY	1 cut(s)	736
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
RseI	CAYNNNNRTG	1 cut(s)	504
SaqAI	TTAA	6 cut(s)	258, 357, 428, 516, 554, 666
SatI	GCNGC	2 cut(s)	65, 648
Sau3AI	GATC	3 cut(s)	93, 271, 736
SchI	GAGTC	2 cut(s)	45, 504
ScrFI	CCNGG	1 cut(s)	619
SduI	GDGCHC	1 cut(s)	298
SfaNI	GCATC	1 cut(s)	496
SfcI	CTRYAG	2 cut(s)	395, 648
SfiI	GGCCNNNNNGGCC	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	3 cut(s)	194, 440, 524
SmoI	CTYRAG	3 cut(s)	194, 440, 524
SphI	GCATGC	1 cut(s)	338
SseBI	AGGCCT	1 cut(s)	203
SsiI	CCGC	1 cut(s)	103
SspMI	CTAG	1 cut(s)	757
StuI	AGGCCT	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	617
TaaI	ACNGT	1 cut(s)	399
TaiI	ACGT	1 cut(s)	232
Tru1I	TTAA	6 cut(s)	258, 357, 428, 516, 554, 666
Tru9I	TTAA	6 cut(s)	258, 357, 428, 516, 554, 666
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	2 cut(s)	314, 363
TseI	GCWGC	2 cut(s)	64, 647
Tsp45I	GTSAC	2 cut(s)	314, 363
TspDTI	ATGAA	2 cut(s)	267, 664
TspRI	CASTG	1 cut(s)	319
XapI	RAATTY	6 cut(s)	151, 170, 254, 278, 457, 660
XceI	RCATGY	1 cut(s)	338
XspI	CTAG	1 cut(s)	757
Zsp2I	ATGCAT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.