Rorug01G0013000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001468
Physical Location & Seq
Reverse (-)
2135166 .. 2135911
746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0013000.1

Sequence Viewer

Length: 474 bp
ATGGCTTATGCAAAAAGCCTCGCGATCACCTCCACATTATTATTCATCATGTGGCTGGGGATTTTGGGAACATCACAAGCCACATCCCGCAGATTCAAAGAGAATACAAATTCTACTCTTTTCCTAGAATTTGAGCGATGGATGGTAGCCTTCGACAAACATTACCCGAACGACGAAGAGAAGGAGAGGCGTTTCGCAATCTTCAAGAACAAGTCGGAGTGGGTCAAGAACTTCAACAAGCAAGGGAATCACTCTTTTACGGTAGGAATCAATCAATTTTCTGATATGACCCCTGATGAATTCCGGCCATGTGCTACTGGCCGCCGCCGCCGCCGCCACCCCAGCTTAAGCTCTAGTGTGGTCGACTCCTCCAGGTGGCTGATCTGGGTTCTGCCTTTATTTGGCATTATAGCCGTGTTAATGTGTGGTACGGCTATGGAGCAGGGTTGGTTTGCTTGGAAGTCGGAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

18.31

Weight (kDa)

9.64

Isoelectric Point (pI)

59.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 44 - 101 6.9e-20 Cathepsin propeptide inhibitor domain (I29)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 363
AccII CGCG 1 cut(s) 23
AciI CCGC 6 cut(s) 88, 322, 325, 328, 331, 334
AcoI YGGCCR 2 cut(s) 305, 319
AcsI RAATTY 3 cut(s) 109, 128, 299
AfaI GTAC 1 cut(s) 430
AfiI CCNNNNNNNGG 2 cut(s) 375, 401
AflII CTTAAG 1 cut(s) 346
AgsI TTSAA 3 cut(s) 97, 205, 235
AjnI CCWGG 1 cut(s) 371
AluBI AGCT 2 cut(s) 345, 351
AluI AGCT 2 cut(s) 345, 351
Alw26I GTCTC 1 cut(s) 461
AoxI GGCC 2 cut(s) 305, 319
ApoI RAATTY 3 cut(s) 109, 128, 299
AsuHPI GGTGA 1 cut(s) 19
BccI CCATC 2 cut(s) 132, 136
BceAI ACGGC 2 cut(s) 398, 447
BciT130I CCWGG 1 cut(s) 373
BcoDI GTCTC 1 cut(s) 461
BfaI CTAG 2 cut(s) 125, 354
BfrI CTTAAG 1 cut(s) 346
BisI GCNGC 5 cut(s) 322, 325, 328, 331, 334
BlsI GCNGC 5 cut(s) 323, 326, 329, 332, 335
Bme1390I CCNGG 1 cut(s) 373
BmrFI CCNGG 1 cut(s) 373
BpmI CTGGAG 1 cut(s) 355
Bsc4I CCNNNNNNNGG 2 cut(s) 375, 401
Bse1I ACTGG 1 cut(s) 322
BseBI CCWGG 1 cut(s) 373
BseGI GGATG 2 cut(s) 83, 147
BseLI CCNNNNNNNGG 2 cut(s) 375, 401
BseNI ACTGG 1 cut(s) 322
BseRI GAGGAG 1 cut(s) 358
BseYI CCCAGC 2 cut(s) 55, 341
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 2 cut(s) 307, 321
BsiSI CCGG 1 cut(s) 304
BslI CCNNNNNNNGG 2 cut(s) 375, 401
BsmAI GTCTC 1 cut(s) 461
BsnI GGCC 2 cut(s) 307, 321
Bsp143I GATC 2 cut(s) 24, 381
Bsp68I TCGCGA 1 cut(s) 23
BspACI CCGC 6 cut(s) 88, 322, 325, 328, 331, 334
BspANI GGCC 2 cut(s) 307, 321
BspFNI CGCG 1 cut(s) 23
BspTI CTTAAG 1 cut(s) 346
BsrI ACTGG 1 cut(s) 322
BssMI GATC 2 cut(s) 24, 381
Bst2UI CCWGG 1 cut(s) 373
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 1 cut(s) 171
BstAFI CTTAAG 1 cut(s) 346
BstF5I GGATG 2 cut(s) 83, 147
BstFNI CGCG 1 cut(s) 23
BstKTI GATC 2 cut(s) 27, 384
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 2 cut(s) 24, 381
BstMWI GCNNNNNNNGC 4 cut(s) 327, 330, 333, 342
BstNI CCWGG 1 cut(s) 373
BstSCI CCNGG 1 cut(s) 371
BstUI CGCG 1 cut(s) 23
BsuRI GGCC 2 cut(s) 307, 321
BtgZI GCGATG 1 cut(s) 151
BtsCI GGATG 2 cut(s) 83, 147
BtuMI TCGCGA 1 cut(s) 23
Csp6I GTAC 1 cut(s) 429
CviAII CATG 2 cut(s) 49, 309
CviQI GTAC 1 cut(s) 429
DpnI GATC 2 cut(s) 26, 383
DpnII GATC 2 cut(s) 24, 381
EaeI YGGCCR 2 cut(s) 305, 319
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
EcoRI GAATTC 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 371
FaeI CATG 2 cut(s) 52, 312
FaiI YATR 6 cut(s) 9, 50, 287, 310, 410, 437
FatI CATG 2 cut(s) 48, 308
FauI CCCGC 1 cut(s) 95
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 5 cut(s) 322, 325, 328, 331, 334
FokI GGATG 2 cut(s) 70, 154
Fsp4HI GCNGC 5 cut(s) 322, 325, 328, 331, 334
FspBI CTAG 2 cut(s) 125, 354
GluI GCNGC 5 cut(s) 322, 325, 328, 331, 334
GsaI CCCAGC 2 cut(s) 59, 345
GsuI CTGGAG 1 cut(s) 355
HaeIII GGCC 2 cut(s) 307, 321
HapII CCGG 1 cut(s) 304
Hin1II CATG 2 cut(s) 52, 312
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 4 cut(s) 93, 247, 267, 365
HpaII CCGG 1 cut(s) 304
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 3 cut(s) 217, 283, 466
Hpy188III TCNNGA 3 cut(s) 22, 205, 226
Hpy8I GTNNAC 1 cut(s) 364
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 2 cut(s) 160, 175
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4V TGCA 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 4 cut(s) 327, 330, 333, 342
Hsp92II CATG 2 cut(s) 52, 312
Kzo9I GATC 2 cut(s) 24, 381
LmnI GCTCC 1 cut(s) 439
LpnPI CCDG 9 cut(s) 41, 303, 306, 317, 355, 358, 370, 385, 428
MaeI CTAG 2 cut(s) 125, 354
MalI GATC 2 cut(s) 26, 383
MboI GATC 2 cut(s) 24, 381
MboII GAAGA 2 cut(s) 188, 193
MluCI AATT 4 cut(s) 109, 128, 275, 299
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 2 cut(s) 195, 444
MnlI CCTC 4 cut(s) 29, 40, 180, 379
MseI TTAA 2 cut(s) 347, 419
MspCI CTTAAG 1 cut(s) 346
MspI CCGG 1 cut(s) 304
MspR9I CCNGG 1 cut(s) 373
MvaI CCWGG 1 cut(s) 373
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 4 cut(s) 327, 330, 333, 342
NdeII GATC 2 cut(s) 24, 381
NlaIII CATG 2 cut(s) 52, 312
NruI TCGCGA 1 cut(s) 23
PfeI GAWTC 3 cut(s) 93, 247, 267
PkrI GCNGC 5 cut(s) 323, 326, 329, 332, 335
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 371
PspFI CCCAGC 2 cut(s) 55, 341
PspGI CCWGG 1 cut(s) 371
RruI TCGCGA 1 cut(s) 23
RsaI GTAC 1 cut(s) 430
RsaNI GTAC 1 cut(s) 429
SalI GTCGAC 1 cut(s) 362
SaqAI TTAA 2 cut(s) 347, 419
SatI GCNGC 5 cut(s) 322, 325, 328, 331, 334
Sau3AI GATC 2 cut(s) 24, 381
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 1 cut(s) 373
SetI ASST 4 cut(s) 32, 347, 353, 377
SmlI CTYRAG 1 cut(s) 346
SmoI CTYRAG 1 cut(s) 346
Sse9I AATT 4 cut(s) 109, 128, 275, 299
SsiI CCGC 6 cut(s) 88, 322, 325, 328, 331, 334
SspMI CTAG 2 cut(s) 125, 354
StyD4I CCNGG 1 cut(s) 371
TaaI ACNGT 1 cut(s) 262
TaqI TCGA 2 cut(s) 153, 363
TasI AATT 4 cut(s) 109, 128, 275, 299
TauI GCSGC 5 cut(s) 324, 327, 330, 333, 336
TfiI GAWTC 3 cut(s) 93, 247, 267
Tru1I TTAA 2 cut(s) 347, 419
Tru9I TTAA 2 cut(s) 347, 419
TspDTI ATGAA 2 cut(s) 34, 312
Vha464I CTTAAG 1 cut(s) 346
XapI RAATTY 3 cut(s) 109, 128, 299
XmiI GTMKAC 1 cut(s) 363
XspI CTAG 2 cut(s) 125, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.