Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Reverse (-)

2510155 .. 2511969

Gene Structure 1815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG016100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTCAAGTGAGGCAGGCACCATGGACGACGAAAAGGTTTTGAAGCTCAAAGAGAAGCTTTCTGAATGCCGACTCCTAAGGAAGCAGCTCTTGAAAGAGAGAGAGATATGGACGATCAAGGAGCGGAAAATAAACGAACTACAAGAAGAACTCAGAGTTGAAATAGAAGCGAATTCGCGTGCGACTACTGAATTTGAAGAAAAAAAAAAGCCACTCAAGGAGGCCTTTCAGGCCAAGAGGCAGAGTGTACGTCAGGTCAAGAAGGCATTGGATGAATTTAATGCTAACCGAGATCGTGAATTCCATTATAAGGGAGCACAAACAGCCAATGCCAGTGACAGGTTTGATAGATTGCATGCTGAATTAGAAAAGAAAATTAAGTGGTCACAAGCAGAGAGAGATCATCTGGACACGCTACAGTCAAAGATAGATGAGAAATGGGACAATTTAATTACTTTTCTTGAGACTTGTCGGAAAAATTCAAAAATCACTGATGATGTGAAGCCTTGGCTCCGAGTCCACTATGATGCATACATTAAAACACTCAAGAGTGACGATGATGATTGTAAAATGTTAAAAAAGTATGTGCATTTTATGTTTGCCGGGGTTGATTTCATGGCTCCAATTTCTGCTGCAATATCAAATTTTTTTAACTTCTTCATAGGAAAAGAGACGAAGTCCAATACTTCTCTTATCTGTAACAGAAGCTCTACCAACAGAGATCCTAAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

28.79

Weight (kDa)

8.97

Isoelectric Point (pI)

34.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
AccB1I	GGYRCC	1 cut(s)	17
AccBSI	CCGCTC	1 cut(s)	124
AccII	CGCG	1 cut(s)	178
AciI	CCGC	1 cut(s)	124
AclWI	GGATC	1 cut(s)	716
AcsI	RAATTY	6 cut(s)	172, 191, 275, 299, 478, 643
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	310, 339
AgsI	TTSAA	5 cut(s)	43, 94, 161, 197, 483
AluBI	AGCT	4 cut(s)	46, 58, 88, 708
AluI	AGCT	4 cut(s)	46, 58, 88, 708
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	2 cut(s)	458, 665
AlwI	GGATC	1 cut(s)	716
AoxI	GGCC	2 cut(s)	222, 231
ApeKI	GCWGC	2 cut(s)	85, 632
ApoI	RAATTY	6 cut(s)	172, 191, 275, 299, 478, 643
AsuC2I	CCSGG	1 cut(s)	604
AxyI	CCTNAGG	2 cut(s)	77, 726
BanI	GGYRCC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	319
BbvI	GCAGC	2 cut(s)	97, 619
BcnI	CCSGG	1 cut(s)	604
BcoDI	GTCTC	2 cut(s)	458, 665
BfmI	CTRYAG	1 cut(s)	416
BglI	GCCNNNNNGGC	1 cut(s)	230
BisI	GCNGC	2 cut(s)	86, 633
BlsI	GCNGC	2 cut(s)	87, 634
Bme1390I	CCNGG	1 cut(s)	604
BmiI	GGNNCC	3 cut(s)	19, 512, 621
BmrFI	CCNGG	1 cut(s)	604
BmsI	GCATC	1 cut(s)	517
BpuEI	CTTGAG	3 cut(s)	200, 482, 530
BpuMI	CCSGG	1 cut(s)	604
BsaJI	CCNNGG	3 cut(s)	21, 506, 603
Bsc4I	CCNNNNNNNGG	2 cut(s)	310, 339
Bse1I	ACTGG	1 cut(s)	333
Bse21I	CCTNAGG	2 cut(s)	77, 726
BseDI	CCNNGG	3 cut(s)	21, 506, 603
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	2 cut(s)	310, 339
BseMII	CTCAG	1 cut(s)	166
BseNI	ACTGG	1 cut(s)	333
BseXI	GCAGC	2 cut(s)	97, 619
Bsh1236I	CGCG	1 cut(s)	178
BshFI	GGCC	2 cut(s)	224, 233
BshNI	GGYRCC	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	319
BsiSI	CCGG	1 cut(s)	603
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	2 cut(s)	310, 339
BsmAI	GTCTC	2 cut(s)	458, 665
BsmBI	CGTCTC	1 cut(s)	665
BsmFI	GGGAC	1 cut(s)	455
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	224, 233
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp143I	GATC	4 cut(s)	114, 292, 400, 721
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	1 cut(s)	124
BspANI	GGCC	2 cut(s)	224, 233
BspCNI	CTCAG	1 cut(s)	165
BspFNI	CGCG	1 cut(s)	178
BspLI	GGNNCC	3 cut(s)	19, 512, 621
BspPI	GGATC	1 cut(s)	716
BspT107I	GGYRCC	1 cut(s)	17
BsrBI	CCGCTC	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	333
BssECI	CCNNGG	3 cut(s)	21, 506, 603
BssMI	GATC	4 cut(s)	114, 292, 400, 721
BssT1I	CCWWGG	2 cut(s)	21, 506
Bst4CI	ACNGT	1 cut(s)	420
BstC8I	GCNNGC	3 cut(s)	16, 180, 357
BstDEI	CTNAG	3 cut(s)	77, 152, 726
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	277
BstFNI	CGCG	1 cut(s)	178
BstKTI	GATC	4 cut(s)	117, 295, 403, 724
BstMAI	GTCTC	2 cut(s)	458, 665
BstMBI	GATC	4 cut(s)	114, 292, 400, 721
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 323
BstNSI	RCATGY	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	602
BstSFI	CTRYAG	1 cut(s)	416
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	2 cut(s)	97, 619
BstX2I	RGATCY	1 cut(s)	721
BstYI	RGATCY	1 cut(s)	721
Bsu36I	CCTNAGG	2 cut(s)	77, 726
BsuRI	GGCC	2 cut(s)	224, 233
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	277
BtsIMutI	CAGTG	2 cut(s)	340, 489
Cac8I	GCNNGC	3 cut(s)	16, 180, 357
Csp6I	GTAC	1 cut(s)	248
CviAII	CATG	3 cut(s)	22, 356, 616
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	3 cut(s)	77, 152, 726
DpnI	GATC	4 cut(s)	116, 294, 402, 723
DpnII	GATC	4 cut(s)	114, 292, 400, 721
Eco130I	CCWWGG	2 cut(s)	21, 506
Eco147I	AGGCCT	1 cut(s)	224
Eco81I	CCTNAGG	2 cut(s)	77, 726
EcoRI	GAATTC	2 cut(s)	172, 299
EcoT14I	CCWWGG	2 cut(s)	21, 506
EcoT22I	ATGCAT	1 cut(s)	532
ErhI	CCWWGG	2 cut(s)	21, 506
Esp3I	CGTCTC	1 cut(s)	665
FaeI	CATG	3 cut(s)	25, 359, 619
FalI	AAGNNNNNCTT	6 cut(s)	42, 74, 74, 106, 209, 241
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	3 cut(s)	21, 355, 615
Fnu4HI	GCNGC	2 cut(s)	86, 633
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	2 cut(s)	86, 633
GluI	GCNGC	2 cut(s)	86, 633
HaeIII	GGCC	2 cut(s)	224, 233
HapII	CCGG	1 cut(s)	603
Hin1II	CATG	3 cut(s)	25, 359, 619
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	2 cut(s)	72, 516
HpaII	CCGG	1 cut(s)	603
Hpy166II	GTNNAC	2 cut(s)	248, 520
Hpy188I	TCNGA	4 cut(s)	64, 155, 474, 515
Hpy188III	TCNNGA	6 cut(s)	91, 259, 296, 407, 461, 547
Hpy8I	GTNNAC	2 cut(s)	248, 520
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	4 cut(s)	355, 530, 589, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 323
HpyF3I	CTNAG	3 cut(s)	77, 152, 726
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	3 cut(s)	25, 359, 619
Kzo9I	GATC	4 cut(s)	114, 292, 400, 721
LmnI	GCTCC	4 cut(s)	121, 314, 516, 625
LpnPI	CCDG	6 cut(s)	215, 239, 325, 346, 392, 616
Lsp1109I	GCAGC	2 cut(s)	97, 619
LweI	GCATC	1 cut(s)	517
MaeII	ACGT	1 cut(s)	250
MaeIII	GTNAC	4 cut(s)	335, 384, 551, 698
MalI	GATC	4 cut(s)	116, 294, 402, 723
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	4 cut(s)	114, 292, 400, 721
MboII	GAAGA	3 cut(s)	158, 209, 649
MflI	RGATCY	1 cut(s)	721
MhlI	GDGCHC	1 cut(s)	319
MlyI	GAGTC	2 cut(s)	66, 525
MmeI	TCCRAC	1 cut(s)	452
MnlI	CCTC	3 cut(s)	4, 214, 231
Mph1103I	ATGCAT	1 cut(s)	532
MseI	TTAA	6 cut(s)	279, 378, 449, 537, 575, 651
MslI	CAYNNNNRTG	1 cut(s)	525
MspI	CCGG	1 cut(s)	603
MspR9I	CCNGG	1 cut(s)	604
Mva1269I	GAATGC	1 cut(s)	71
MvnI	CGCG	1 cut(s)	178
MwoI	GCNNNNNNNGC	2 cut(s)	230, 323
NciI	CCSGG	1 cut(s)	604
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	4 cut(s)	114, 292, 400, 721
NlaIII	CATG	3 cut(s)	25, 359, 619
NlaIV	GGNNCC	3 cut(s)	19, 512, 621
NmuCI	GTSAC	3 cut(s)	335, 384, 551
NsiI	ATGCAT	1 cut(s)	532
NspI	RCATGY	1 cut(s)	359
PaeI	GCATGC	1 cut(s)	359
PceI	AGGCCT	1 cut(s)	224
PctI	GAATGC	1 cut(s)	71
PflFI	GACNNNGTC	1 cut(s)	676
PkrI	GCNGC	2 cut(s)	87, 634
PleI	GAGTC	2 cut(s)	66, 524
PpsI	GAGTC	2 cut(s)	66, 524
PsiI	TTATAA	1 cut(s)	309
PspN4I	GGNNCC	3 cut(s)	19, 512, 621
PsuI	RGATCY	1 cut(s)	721
PsyI	GACNNNGTC	1 cut(s)	676
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	525
SaqAI	TTAA	6 cut(s)	279, 378, 449, 537, 575, 651
SatI	GCNGC	2 cut(s)	86, 633
Sau3AI	GATC	4 cut(s)	114, 292, 400, 721
SchI	GAGTC	2 cut(s)	66, 525
ScrFI	CCNGG	1 cut(s)	604
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	9 cut(s)	39, 48, 60, 90, 253, 258, 344, 710, 732
SfaNI	GCATC	1 cut(s)	517
SfcI	CTRYAG	1 cut(s)	416
SfiI	GGCCNNNNNGGCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	3 cut(s)	215, 461, 545
SmoI	CTYRAG	3 cut(s)	215, 461, 545
SphI	GCATGC	1 cut(s)	359
SseBI	AGGCCT	1 cut(s)	224
SsiI	CCGC	1 cut(s)	124
StuI	AGGCCT	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	602
StyI	CCWWGG	2 cut(s)	21, 506
TaaI	ACNGT	1 cut(s)	420
TaiI	ACGT	1 cut(s)	253
Tru1I	TTAA	6 cut(s)	279, 378, 449, 537, 575, 651
Tru9I	TTAA	6 cut(s)	279, 378, 449, 537, 575, 651
TscAI	CASTG	2 cut(s)	340, 496
TseFI	GTSAC	3 cut(s)	335, 384, 551
TseI	GCWGC	2 cut(s)	85, 632
Tsp45I	GTSAC	3 cut(s)	335, 384, 551
TspDTI	ATGAA	3 cut(s)	288, 604, 649
TspRI	CASTG	2 cut(s)	340, 496
Tth111I	GACNNNGTC	1 cut(s)	676
XapI	RAATTY	6 cut(s)	172, 191, 275, 299, 478, 643
XceI	RCATGY	1 cut(s)	359
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.