FvH4_7g12420

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001155
Physical Location & Seq
Reverse (-)
11288491 .. 11288971
481 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12420.t1

Sequence Viewer

Length: 369 bp
ATGAAAATCAGTGCTGGTCCTCTTGTGATAGCCTTTCTCGTTGTTTTTCCGAGTATGGTTTTGGCGAAACAGTATGTCGTCGGAGATGATGAAGGCTGGAATGGTAATGTTGATTACCAAGCTTGGGCTGATGACAAAACTTTCGAACTTGGAGATGTTTTAATTTTCAAATACGATGCTGGTAGCCATAACGTTGCTCAAGCGTTTAATGAAGATGGCTATGATAGTTGTACTTCATCACCAGAATTTGGGGTGTACACCAGTGGCAATGACGCTTTAACTTTCAATCTTGTTGGGTCCTATTATTTCTTATGTGACTACCATTGTGATTCTGATCAACATAAAGTTATGATCAATATTGTAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

123

Amino Acids

13.53

Weight (kDa)

4.21

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 112 6e-20 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 248
AclI AACGTT 1 cut(s) 192
AcsI RAATTY 1 cut(s) 245
AfaI GTAC 2 cut(s) 232, 257
AfiI CCNNNNNNNGG 2 cut(s) 124, 248
AgsI TTSAA 2 cut(s) 169, 286
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
ApoI RAATTY 1 cut(s) 245
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AspS9I GGNCC 2 cut(s) 17, 297
AsuHPI GGTGA 1 cut(s) 231
AsuII TTCGAA 1 cut(s) 144
AvaII GGWCC 2 cut(s) 17, 297
BccI CCATC 1 cut(s) 209
BclI TGATCA 2 cut(s) 334, 351
Bme18I GGWCC 2 cut(s) 17, 297
BmgT120I GGNCC 2 cut(s) 17, 297
BmiI GGNNCC 1 cut(s) 298
BmsI GCATC 1 cut(s) 166
Bpu14I TTCGAA 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 333
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 248
Bse1I ACTGG 1 cut(s) 261
Bse3DI GCAATG 1 cut(s) 274
Bse8I GATNNNNATC 1 cut(s) 333
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 2 cut(s) 124, 248
BseMI GCAATG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 261
BslI CCNNNNNNNGG 2 cut(s) 124, 248
Bsp119I TTCGAA 1 cut(s) 144
Bsp1407I TGTACA 1 cut(s) 255
Bsp143I GATC 2 cut(s) 334, 351
BspLI GGNNCC 1 cut(s) 298
BspT104I TTCGAA 1 cut(s) 144
BsrDI GCAATG 1 cut(s) 274
BsrGI TGTACA 1 cut(s) 255
BsrI ACTGG 1 cut(s) 261
BssMI GATC 2 cut(s) 334, 351
Bst4CI ACNGT 1 cut(s) 72
BstAUI TGTACA 1 cut(s) 255
BstBI TTCGAA 1 cut(s) 144
BstKTI GATC 2 cut(s) 337, 354
BstMBI GATC 2 cut(s) 334, 351
BtsIMutI CAGTG 2 cut(s) 16, 268
Cfr13I GGNCC 2 cut(s) 17, 297
CseI GACGC 1 cut(s) 281
Csp6I GTAC 2 cut(s) 231, 256
CviJI RGCY 6 cut(s) 32, 96, 122, 128, 186, 219
CviKI_1 RGCY 6 cut(s) 32, 96, 122, 128, 186, 219
CviQI GTAC 2 cut(s) 231, 256
DpnI GATC 2 cut(s) 336, 353
DpnII GATC 2 cut(s) 334, 351
Eco47I GGWCC 2 cut(s) 17, 297
EcoO109I RGGNCCY 1 cut(s) 297
FaiI YATR 7 cut(s) 56, 75, 189, 222, 313, 342, 350
FbaI TGATCA 2 cut(s) 334, 351
HgaI GACGC 1 cut(s) 281
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 1 cut(s) 329
HphI GGTGA 1 cut(s) 231
Hpy166II GTNNAC 2 cut(s) 256, 258
Hpy188I TCNGA 3 cut(s) 51, 83, 334
Hpy8I GTNNAC 2 cut(s) 256, 258
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 1 cut(s) 86
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4IV ACGT 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 192
Ksp22I TGATCA 2 cut(s) 334, 351
Kzo9I GATC 2 cut(s) 334, 351
LpnPI CCDG 4 cut(s) 82, 165, 255, 274
LweI GCATC 1 cut(s) 166
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 314
MalI GATC 2 cut(s) 336, 353
MboI GATC 2 cut(s) 334, 351
MboII GAAGA 1 cut(s) 224
MluCI AATT 2 cut(s) 162, 245
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 1 cut(s) 30
MseI TTAA 3 cut(s) 161, 207, 278
NdeII GATC 2 cut(s) 334, 351
NlaIV GGNNCC 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 314
NspV TTCGAA 1 cut(s) 144
PfeI GAWTC 1 cut(s) 329
PflMI CCANNNNNTGG 1 cut(s) 248
PpuMI RGGWCCY 1 cut(s) 297
Psp1406I AACGTT 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 298
PspPI GGNCC 2 cut(s) 17, 297
PspPPI RGGWCCY 1 cut(s) 297
RsaI GTAC 2 cut(s) 232, 257
RsaNI GTAC 2 cut(s) 231, 256
SaqAI TTAA 3 cut(s) 161, 207, 278
Sau3AI GATC 2 cut(s) 334, 351
Sau96I GGNCC 2 cut(s) 17, 297
SetI ASST 2 cut(s) 124, 195
SfaNI GCATC 1 cut(s) 166
SfuI TTCGAA 1 cut(s) 144
SinI GGWCC 2 cut(s) 17, 297
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
Sse9I AATT 2 cut(s) 162, 245
SspI AATATT 1 cut(s) 358
TaaI ACNGT 1 cut(s) 72
TaiI ACGT 1 cut(s) 195
TaqI TCGA 1 cut(s) 144
TasI AATT 2 cut(s) 162, 245
TatI WGTACW 2 cut(s) 230, 255
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 3 cut(s) 161, 207, 278
Tru9I TTAA 3 cut(s) 161, 207, 278
TscAI CASTG 2 cut(s) 16, 268
TseFI GTSAC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 4 cut(s) 17, 105, 225, 225
TspRI CASTG 2 cut(s) 16, 268
Van91I CCANNNNNTGG 1 cut(s) 248
VpaK11BI GGWCC 2 cut(s) 17, 297
XapI RAATTY 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.