RLG00000001967

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001155
Physical Location & Seq
Forward (+)
23695699 .. 23696962
1264 bp
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UTR
Exon/CDS
Intron
RLM00000001967

Sequence Viewer

Length: 366 bp
ATGGCACGAGTTAGTACTGCTCTGGTGTTGATTGCCTTCTTCGTTGTTTTTCCGAGCATGGTTTTGGCGACACAATATGTTGTTGGAGATGATTTAGGCTGGAGTGGTGATGCTGATTACGAGGGTTGGGTTGCTGACAAAACTTTCTTTGTTGGAGATGACTGGGACCTCGGCGGCCAAGGCGGGCATAATTCCGACGCTCACTATAATCCATCACATGGTAGAGGGGGCCGAGGCGAGCATAATTCCGACACTCACTTTAATCCATCGCACGACAGAGGTGGTAGAGAAGGTTTCAACGGTGGAGGAAGTTCCGGTGTCGTGGCTCCGACGCCGACTCAAGGTTTTCGAGTTGTCGACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

122

Amino Acids

12.87

Weight (kDa)

4.87

Isoelectric Point (pI)

19.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 218
AccI GTMKAC 1 cut(s) 357
AciI CCGC 2 cut(s) 174, 183
AcoI YGGCCR 1 cut(s) 175
AcyI GRCGYC 1 cut(s) 332
AfaI GTAC 1 cut(s) 16
AfiI CCNNNNNNNGG 2 cut(s) 218, 341
AgsI TTSAA 1 cut(s) 298
AoxI GGCC 2 cut(s) 175, 229
AspS9I GGNCC 2 cut(s) 166, 229
AsuHPI GGTGA 1 cut(s) 119
AvaII GGWCC 1 cut(s) 166
BauI CACGAG 1 cut(s) 6
BccI CCATC 2 cut(s) 220, 274
BisI GCNGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 176
BmcAI AGTACT 1 cut(s) 16
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 2 cut(s) 166, 229
BmiI GGNNCC 3 cut(s) 167, 230, 327
BmrI ACTGGG 1 cut(s) 172
BmsI GCATC 1 cut(s) 100
BmuI ACTGGG 1 cut(s) 172
BpmI CTGGAG 1 cut(s) 121
BpuEI CTTGAG 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 332
BsaJI CCNNGG 3 cut(s) 169, 178, 232
BsaWI WCCGGW 1 cut(s) 314
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 341
Bse1I ACTGG 1 cut(s) 167
BseDI CCNNGG 3 cut(s) 169, 178, 232
BseLI CCNNNNNNNGG 2 cut(s) 218, 341
BseNI ACTGG 1 cut(s) 167
BshFI GGCC 2 cut(s) 177, 231
BsiSI CCGG 1 cut(s) 315
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 2 cut(s) 218, 341
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 2 cut(s) 177, 231
BspACI CCGC 2 cut(s) 174, 183
BspANI GGCC 2 cut(s) 177, 231
BspLI GGNNCC 3 cut(s) 167, 230, 327
BsrI ACTGG 1 cut(s) 167
BssECI CCNNGG 3 cut(s) 169, 178, 232
BssNI GRCGYC 1 cut(s) 332
BssSI CACGAG 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 178
Bst2BI CACGAG 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 302
BstACI GRCGYC 1 cut(s) 332
BstC8I GCNNGC 2 cut(s) 185, 239
BstMWI GCNNNNNNNGC 1 cut(s) 180
BsuRI GGCC 2 cut(s) 177, 231
BtgZI GCGATG 1 cut(s) 252
Cac8I GCNNGC 2 cut(s) 185, 239
Cfr13I GGNCC 2 cut(s) 166, 229
CseI GACGC 2 cut(s) 206, 340
Csp6I GTAC 1 cut(s) 15
CviAII CATG 2 cut(s) 58, 218
CviJI RGCY 4 cut(s) 99, 177, 231, 326
CviKI_1 RGCY 4 cut(s) 99, 177, 231, 326
CviQI GTAC 1 cut(s) 15
EaeI YGGCCR 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 178
FaeI CATG 2 cut(s) 61, 221
FaiI YATR 6 cut(s) 59, 78, 189, 207, 219, 243
FaqI GGGAC 1 cut(s) 179
FatI CATG 2 cut(s) 57, 217
FauI CCCGC 1 cut(s) 176
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 1 cut(s) 175
Fsp4HI GCNGC 1 cut(s) 175
GluI GCNGC 1 cut(s) 175
GsuI CTGGAG 1 cut(s) 121
HaeIII GGCC 2 cut(s) 177, 231
HapII CCGG 1 cut(s) 315
HgaI GACGC 2 cut(s) 206, 340
Hin1I GRCGYC 1 cut(s) 332
Hin1II CATG 2 cut(s) 61, 221
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 1 cut(s) 337
HpaII CCGG 1 cut(s) 315
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 5 cut(s) 54, 196, 250, 330, 365
Hpy8I GTNNAC 1 cut(s) 358
Hpy99I CGWCG 2 cut(s) 200, 334
HpyAV CCTTC 2 cut(s) 46, 284
HpyCH4III ACNGT 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 332
Hsp92II CATG 2 cut(s) 61, 221
LmnI GCTCC 1 cut(s) 331
LpnPI CCDG 4 cut(s) 8, 85, 148, 328
LweI GCATC 1 cut(s) 100
MboII GAAGA 1 cut(s) 31
MluCI AATT 2 cut(s) 190, 244
MlyI GAGTC 1 cut(s) 331
MmeI TCCRAC 5 cut(s) 64, 133, 219, 273, 353
MnlI CCTC 6 cut(s) 115, 179, 218, 227, 272, 299
MseI TTAA 1 cut(s) 261
MspI CCGG 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 180
NlaIII CATG 2 cut(s) 61, 221
NlaIV GGNNCC 3 cut(s) 167, 230, 327
NmeAIII GCCGAG 2 cut(s) 150, 257
PflMI CCANNNNNTGG 1 cut(s) 218
PkrI GCNGC 1 cut(s) 176
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
PpuMI RGGWCCY 1 cut(s) 166
Psp5II RGGWCCY 1 cut(s) 166
PspN4I GGNNCC 3 cut(s) 167, 230, 327
PspPI GGNCC 2 cut(s) 166, 229
PspPPI RGGWCCY 1 cut(s) 166
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
SalI GTCGAC 1 cut(s) 356
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 1 cut(s) 175
Sau96I GGNCC 2 cut(s) 166, 229
ScaI AGTACT 1 cut(s) 16
SchI GAGTC 1 cut(s) 331
SetI ASST 4 cut(s) 171, 283, 295, 346
SfaNI GCATC 1 cut(s) 100
SinI GGWCC 1 cut(s) 166
SmlI CTYRAG 1 cut(s) 339
SmoI CTYRAG 1 cut(s) 339
Sse9I AATT 2 cut(s) 190, 244
SsiI CCGC 2 cut(s) 174, 183
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 1 cut(s) 302
TaqI TCGA 2 cut(s) 349, 357
TasI AATT 2 cut(s) 190, 244
TatI WGTACW 1 cut(s) 14
TauI GCSGC 1 cut(s) 177
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
Van91I CCANNNNNTGG 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 357
ZrmI AGTACT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.