Rh1CG216500

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001155
Physical Location & Seq
Reverse (-)
46570747 .. 46583327
12581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG216500.1

Sequence Viewer

Length: 312 bp
ATGGCGCGAATCACTGCTGCACTTGCTGTGATTGCCTTGTTTGCTGTATTTCCGAGCATGGAGGCAACGCAGTATATTGTTGGTGATGACCAGGGTTGGAGTTCTAATGTTGATTACTACTCTTGGATTGCTGGCAAAACTTTTCATGTTGGAGATTCTTTAGTTTTCAATTATCCAACTATGATGCGTCACAATGTGTTTGTAGCAGCTAATTCTGATGTGTATGATAATTGTGATGCTGCTCCAAACTATGGGATCTGGACAAGTGGCAGCGATGTCTTTACCTTGACCACCAAGGGGCACGGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

103

Amino Acids

11.28

Weight (kDa)

4.92

Isoelectric Point (pI)

19.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 101 2.1e-13 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 251
AccII CGCG 1 cut(s) 7
AclWI GGATC 1 cut(s) 263
AdeI CACNNNGTG 1 cut(s) 196
AfiI CCNNNNNNNGG 2 cut(s) 251, 297
AgsI TTSAA 1 cut(s) 169
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
AlwI GGATC 1 cut(s) 263
ApeKI GCWGC 4 cut(s) 17, 206, 239, 270
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 303
BbvI GCAGC 4 cut(s) 4, 218, 226, 282
BciT130I CCWGG 1 cut(s) 92
BisI GCNGC 4 cut(s) 18, 207, 240, 271
BlsI GCNGC 4 cut(s) 19, 208, 241, 272
Bme1390I CCNGG 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 2 cut(s) 174, 226
BsaJI CCNNGG 2 cut(s) 91, 294
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 297
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 2 cut(s) 91, 294
BseLI CCNNNNNNNGG 2 cut(s) 251, 297
BseSI GKGCMC 1 cut(s) 303
BseXI GCAGC 4 cut(s) 4, 218, 226, 282
Bsh1236I CGCG 1 cut(s) 7
BslI CCNNNNNNNGG 2 cut(s) 251, 297
Bsp1286I GDGCHC 1 cut(s) 303
Bsp143I GATC 1 cut(s) 255
BspFNI CGCG 1 cut(s) 7
BspPI GGATC 1 cut(s) 263
BssECI CCNNGG 2 cut(s) 91, 294
BssMI GATC 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 133
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 258
BstMBI GATC 1 cut(s) 255
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 41
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstSLI GKGCMC 1 cut(s) 303
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 4 cut(s) 4, 218, 226, 282
BstX2I RGATCY 1 cut(s) 255
BstYI RGATCY 1 cut(s) 255
BtgZI GCGATG 1 cut(s) 288
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 133
CfoI GCGC 1 cut(s) 7
CseI GACGC 1 cut(s) 176
CviAII CATG 2 cut(s) 58, 146
CviJI RGCY 1 cut(s) 209
CviKI_1 RGCY 1 cut(s) 209
DpnI GATC 1 cut(s) 257
DpnII GATC 1 cut(s) 255
DraIII CACNNNGTG 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 294
EcoRII CCWGG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 2 cut(s) 61, 149
FaiI YATR 6 cut(s) 59, 75, 147, 182, 225, 252
FatI CATG 2 cut(s) 57, 145
Fnu4HI GCNGC 4 cut(s) 18, 207, 240, 271
Fsp4HI GCNGC 4 cut(s) 18, 207, 240, 271
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 18, 207, 240, 271
HgaI GACGC 1 cut(s) 176
HhaI GCGC 1 cut(s) 7
Hin1II CATG 2 cut(s) 61, 149
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 2 cut(s) 9, 155
HphI GGTGA 1 cut(s) 95
Hpy188I TCNGA 2 cut(s) 54, 217
Hpy188III TCNNGA 1 cut(s) 259
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4V TGCA 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 41
Hsp92II CATG 2 cut(s) 61, 149
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 1 cut(s) 255
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 4 cut(s) 77, 104, 117, 244
Lsp1109I GCAGC 4 cut(s) 4, 218, 226, 282
LweI GCATC 2 cut(s) 174, 226
MaeIII GTNAC 1 cut(s) 188
MalI GATC 1 cut(s) 257
MboI GATC 1 cut(s) 255
MflI RGATCY 1 cut(s) 255
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 3 cut(s) 169, 211, 229
MmeI TCCRAC 3 cut(s) 77, 130, 200
MnlI CCTC 1 cut(s) 55
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 41
NdeII GATC 1 cut(s) 255
NlaIII CATG 2 cut(s) 61, 149
NmuCI GTSAC 1 cut(s) 188
PfeI GAWTC 2 cut(s) 9, 155
PflMI CCANNNNNTGG 1 cut(s) 251
PkrI GCNGC 4 cut(s) 19, 208, 241, 272
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PsuI RGATCY 1 cut(s) 255
SatI GCNGC 4 cut(s) 18, 207, 240, 271
Sau3AI GATC 1 cut(s) 255
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 1 cut(s) 303
SetI ASST 2 cut(s) 211, 287
SfaNI GCATC 2 cut(s) 174, 226
Sse9I AATT 3 cut(s) 169, 211, 229
StyD4I CCNGG 1 cut(s) 90
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 1 cut(s) 305
TasI AATT 3 cut(s) 169, 211, 229
TfiI GAWTC 2 cut(s) 9, 155
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 4 cut(s) 17, 206, 239, 270
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 134
TspRI CASTG 1 cut(s) 19
Van91I CCANNNNNTGG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.