Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001155

Physical Location & Seq

Genomic Coordinates Reverse (-)

46458657 .. 46459155

Gene Structure 499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG215800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCAAAGTGAGATTTCTTCTGAGGGACTAACAAGAGCTACCTTTATTACTAACATGGCACGAGTCACTACTGCTCTTGTTGTCATTGCCTTTTCCGTCGTTTTTCCGAGCCTGGTTCTGGCAACAGAATATGTTGTCGGAGATGATCTAGGCTGGGACGGAACTGCTAATTACCAAGCTTGGGCTGATGACCATGCTTTCCATGTTGGAGATGTCTTAATTTTCAATTACGAAGCAGGTGAACACAACGTTCTTTTAGCGGCTGATCCTCTAGGGATTGATACTTGTGTTTCATCTCCAAGCTTAGGTGCGTACGACAGTGGCAATGACGCATTAACCTTGAGCGTTGCTGGAACCTACTACTTCTTATGTGGATATCACTGCGATACACTTCAGCAGAAGTTCTTTATCGTTGTGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

140

Amino Acids

15.1

Weight (kDa)

4.08

Isoelectric Point (pI)

27.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	54 - 128	2.8e-16	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001155)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12420 FvH4_7g12430 FvH4_7g12440
malus_domestica	MD02G1199200.v1.1
prunus_persica	Prupe.2G149200_v2.0.a1
pyrus_communis	pycom02g16320 pycom02g16340
rosa_chinensis	RchiOBHm_Chr1g0351161 RchiOBHm_Chr1g0351231 RchiOBHm_Chr1g0351241 RchiOBHm_Chr1g0351251 RchiOBHm_Chr1g0351261 RchiOBHm_Chr1g0351271 RchiOBHm_Chr1g0351311 RchiOBHm_Chr1g0352011 RchiOBHm_Chr1g0352031 RchiOBHm_Chr1g0352041
rosa_laevigata	RLG00000001967 RLG00000028366
rosa_multiflora	Rmu_sc0002464.1_g000001 Rmu_sc0003271.1_g000014 Rmu_sc0003700.1_g000010 Rmu_sc0009891.1_g000010
rosa_roxburghii	Rroxscaffold_4G00303340 Rroxscaffold_4G00303890 Rroxscaffold_4G00303920 Rroxscaffold_4G00303940 Rroxscaffold_4G00303950
rosa_rugosa	Rorug01G0217100 Rorug01G0217200 Rorug01G0217300 Rorug01G0223600
rosa_samantha	Rh1BG201800 Rh1BG201900 Rh1BG202000 Rh1BG202300 Rh1BG207900 Rh1BG208300 Rh1CG215300 Rh1CG215800 Rh1CG215900 Rh1CG216200 Rh1CG216400 Rh1CG216500 Rh1CG216700 Rh1CG222000 Rh1CG222500 Rh1DG229100 Rh1DG229200 Rh1DG229300 Rh1DG229500 Rh1DG234900
rosa_wichuraiana	Rw1G020120 Rw1G020140 Rw1G020160 Rw1G020200 Rw1G020660 Rw1G020670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	227
AciI	CCGC	1 cut(s)	260
AclI	AACGTT	1 cut(s)	249
AclWI	GGATC	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	377
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	3 cut(s)	118, 181, 305
AgsI	TTSAA	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	111
AluBI	AGCT	3 cut(s)	38, 179, 303
AluI	AGCT	3 cut(s)	38, 179, 303
AlwI	GGATC	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	251
BaeI	ACNNNNGTAYC	2 cut(s)	273, 306
BauI	CACGAG	1 cut(s)	60
BciT130I	CCWGG	1 cut(s)	113
BfaI	CTAG	3 cut(s)	149, 272, 421
BfuAI	ACCTGC	1 cut(s)	227
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	355
BmrFI	CCNGG	1 cut(s)	113
Bpu10I	CCTNAGC	1 cut(s)	304
BpuEI	CTTGAG	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 181, 305
Bse3DI	GCAATG	2 cut(s)	84, 331
BseBI	CCWGG	1 cut(s)	113
BseLI	CCNNNNNNNGG	3 cut(s)	118, 181, 305
BseMI	GCAATG	2 cut(s)	84, 331
BseMII	CTCAG	1 cut(s)	12
BseYI	CCCAGC	1 cut(s)	153
BsiWI	CGTACG	1 cut(s)	312
BslFI	GGGAC	2 cut(s)	39, 170
BslI	CCNNNNNNNGG	3 cut(s)	118, 181, 305
BsmFI	GGGAC	2 cut(s)	39, 170
Bsp143I	GATC	2 cut(s)	145, 265
BspACI	CCGC	1 cut(s)	260
BspCNI	CTCAG	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	355
BspMI	ACCTGC	1 cut(s)	227
BspPI	GGATC	1 cut(s)	260
BsrDI	GCAATG	2 cut(s)	84, 331
BssMI	GATC	2 cut(s)	145, 265
BssSI	CACGAG	1 cut(s)	60
Bst2BI	CACGAG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	320
BstDEI	CTNAG	2 cut(s)	21, 304
BstKTI	GATC	2 cut(s)	148, 268
BstMBI	GATC	2 cut(s)	145, 265
BstNI	CCWGG	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	111
BtsI	GCAGTG	1 cut(s)	379
BtsIMutI	CAGTG	2 cut(s)	325, 379
BveI	ACCTGC	1 cut(s)	227
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	3 cut(s)	55, 194, 203
CviJI	RGCY	7 cut(s)	38, 111, 153, 179, 185, 263, 303
CviKI_1	RGCY	7 cut(s)	38, 111, 153, 179, 185, 263, 303
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	2 cut(s)	21, 304
DpnI	GATC	2 cut(s)	147, 267
DpnII	GATC	2 cut(s)	145, 265
Eco32I	GATATC	1 cut(s)	377
Eco57I	CTGAAG	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	111
EcoRV	GATATC	1 cut(s)	377
FaeI	CATG	3 cut(s)	58, 197, 206
FaiI	YATR	5 cut(s)	56, 132, 195, 204, 370
FaqI	GGGAC	2 cut(s)	39, 170
FatI	CATG	3 cut(s)	54, 193, 202
Fnu4HI	GCNGC	1 cut(s)	261
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	3 cut(s)	149, 272, 421
GluI	GCNGC	1 cut(s)	261
GsaI	CCCAGC	1 cut(s)	157
HgaI	GACGC	1 cut(s)	338
Hin1II	CATG	3 cut(s)	58, 197, 206
HindIII	AAGCTT	2 cut(s)	177, 301
HinfI	GANTC	1 cut(s)	63
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	2 cut(s)	242, 418
Hpy188I	TCNGA	3 cut(s)	22, 108, 140
Hpy8I	GTNNAC	2 cut(s)	242, 418
Hpy99I	CGWCG	1 cut(s)	101
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	21, 304
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	3 cut(s)	58, 197, 206
Kzo9I	GATC	2 cut(s)	145, 265
LpnPI	CCDG	6 cut(s)	98, 104, 125, 139, 222, 336
MaeI	CTAG	3 cut(s)	149, 272, 421
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	2 cut(s)	147, 267
MboI	GATC	2 cut(s)	145, 265
MboII	GAAGA	1 cut(s)	9
MluCI	AATT	3 cut(s)	169, 219, 226
MlyI	GAGTC	1 cut(s)	72
MmeI	TCCRAC	2 cut(s)	118, 187
MnlI	CCTC	2 cut(s)	16, 279
MseI	TTAA	2 cut(s)	218, 335
MspR9I	CCNGG	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	113
NdeII	GATC	2 cut(s)	145, 265
NlaIII	CATG	3 cut(s)	58, 197, 206
NlaIV	GGNNCC	1 cut(s)	355
NmuCI	GTSAC	1 cut(s)	64
PaqCI	CACCTGC	1 cut(s)	227
Pfl23II	CGTACG	1 cut(s)	312
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
Psp1406I	AACGTT	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	111
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	111
PspLI	CGTACG	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	355
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SaqAI	TTAA	2 cut(s)	218, 335
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	2 cut(s)	145, 265
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	113
SetI	ASST	9 cut(s)	40, 44, 181, 241, 252, 305, 310, 341, 359
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
Sse9I	AATT	3 cut(s)	169, 219, 226
SsiI	CCGC	1 cut(s)	260
SspMI	CTAG	3 cut(s)	149, 272, 421
StyD4I	CCNGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	1 cut(s)	252
TasI	AATT	3 cut(s)	169, 219, 226
TauI	GCSGC	1 cut(s)	263
Tru1I	TTAA	2 cut(s)	218, 335
Tru9I	TTAA	2 cut(s)	218, 335
TscAI	CASTG	2 cut(s)	325, 386
TseFI	GTSAC	1 cut(s)	64
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	282
TspGWI	ACGGA	2 cut(s)	85, 174
TspRI	CASTG	2 cut(s)	325, 386
XspI	CTAG	3 cut(s)	149, 272, 421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.