Rw1G020660

Basic blue protein-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
44314464 .. 44314938
475 bp
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UTR
Exon/CDS
Intron
Rw1G020660.1

Sequence Viewer

Length: 369 bp
ATGGCACGAGTTAGTACTGCTCTGGTGTTGATTGCCTTCTTCGTTGTTTTTCCGAGCATGGTTTTGGCGACACAATATGTTGTTGGAGATGATTTAGGTTGGAGTGGTGATGCTGATTACGAGGGTTGGGTTGCTGACAAAACTTTCTTTGTTGGAGATGTTTTAGTTTTCAATTACGTTGCAGCTGACCACAACGTTGTTATAGCTACTAATGGTGACAATTATGACAATTGTGTTGCATCTCCAAACTTTGGCGTGTACGACAGTGGGAATGATGCAATAACATTGAATGAAGCTGGAACTTACTACTTCTTATGTTCATATCATTGCGACTATCTGCAACAGAAAGTTATGGTCACTGTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

122

Amino Acids

13.4

Weight (kDa)

4.05

Isoelectric Point (pI)

21.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 37 - 109 2e-18 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 251
AclI AACGTT 1 cut(s) 195
AfaI GTAC 2 cut(s) 16, 260
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 2 cut(s) 172, 289
AluBI AGCT 3 cut(s) 185, 206, 296
AluI AGCT 3 cut(s) 185, 206, 296
ApeKI GCWGC 1 cut(s) 182
AsuHPI GGTGA 2 cut(s) 119, 227
BauI CACGAG 1 cut(s) 6
BbvI GCAGC 1 cut(s) 194
BfaI CTAG 1 cut(s) 367
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
BmcAI AGTACT 1 cut(s) 16
BmsI GCATC 3 cut(s) 100, 248, 265
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 325
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMI GCAATG 1 cut(s) 325
BseXI GCAGC 1 cut(s) 194
BslI CCNNNNNNNGG 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 325
BssSI CACGAG 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 6
Bst4CI ACNGT 2 cut(s) 266, 361
BstV1I GCAGC 1 cut(s) 194
BtsIMutI CAGTG 2 cut(s) 271, 357
Csp6I GTAC 2 cut(s) 15, 259
CviAII CATG 1 cut(s) 58
CviJI RGCY 3 cut(s) 185, 206, 296
CviKI_1 RGCY 3 cut(s) 185, 206, 296
CviQI GTAC 2 cut(s) 15, 259
FaeI CATG 1 cut(s) 61
FaiI YATR 7 cut(s) 59, 78, 203, 225, 316, 322, 353
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 1 cut(s) 367
GluI GCNGC 1 cut(s) 183
Hin1II CATG 1 cut(s) 61
HphI GGTGA 2 cut(s) 119, 227
Hpy166II GTNNAC 2 cut(s) 259, 364
Hpy188I TCNGA 1 cut(s) 54
Hpy8I GTNNAC 2 cut(s) 259, 364
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 2 cut(s) 266, 361
HpyCH4IV ACGT 2 cut(s) 177, 195
HpyCH4V TGCA 4 cut(s) 182, 239, 278, 340
HpySE526I ACGT 2 cut(s) 177, 195
Hsp92II CATG 1 cut(s) 61
LpnPI CCDG 2 cut(s) 8, 282
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 3 cut(s) 100, 248, 265
MaeI CTAG 1 cut(s) 367
MaeII ACGT 2 cut(s) 177, 195
MaeIII GTNAC 2 cut(s) 215, 355
MboII GAAGA 1 cut(s) 31
MfeI CAATTG 1 cut(s) 229
MluCI AATT 3 cut(s) 172, 220, 229
MmeI TCCRAC 3 cut(s) 64, 80, 133
MnlI CCTC 1 cut(s) 115
MspA1I CMGCKG 1 cut(s) 185
MunI CAATTG 1 cut(s) 229
NlaIII CATG 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 215, 355
PflMI CCANNNNNTGG 1 cut(s) 251
PkrI GCNGC 1 cut(s) 184
Psp1406I AACGTT 1 cut(s) 195
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 2 cut(s) 16, 260
RsaNI GTAC 2 cut(s) 15, 259
SatI GCNGC 1 cut(s) 183
ScaI AGTACT 1 cut(s) 16
SetI ASST 6 cut(s) 100, 180, 187, 198, 208, 298
SfaNI GCATC 3 cut(s) 100, 248, 265
SgeI CNNG 8 cut(s) 18, 20, 35, 66, 70, 133, 268, 309
Sse9I AATT 3 cut(s) 172, 220, 229
SspMI CTAG 1 cut(s) 367
TaaI ACNGT 2 cut(s) 266, 361
TaiI ACGT 2 cut(s) 180, 198
TasI AATT 3 cut(s) 172, 220, 229
TatI WGTACW 1 cut(s) 14
TscAI CASTG 2 cut(s) 271, 364
TseFI GTSAC 2 cut(s) 215, 355
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 2 cut(s) 215, 355
TspDTI ATGAA 2 cut(s) 306, 309
TspRI CASTG 2 cut(s) 271, 364
Van91I CCANNNNNTGG 1 cut(s) 251
XspI CTAG 1 cut(s) 367
ZrmI AGTACT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.