Rh1BG201900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
31944359 .. 31946626
2268 bp
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UTR
Exon/CDS
Intron
Rh1BG201900.1

Sequence Viewer

Length: 189 bp
ATGAACAGACACTCTCTCTCCCTCCTCTCCGTCTCTGTTCACCACGACGCCGGCTTCGACGACTACGAAGCGGAGTCTCCATCGGTTCCGGCGGTTCGATTCCCTGTGGCACAAGCTTTGAGGATGAGGAGCCACTCCTCGACGATCAGCTTCGTCATCATCGAGGTGCTGGTGCTCTTTAGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

6.94

Weight (kDa)

6.38

Isoelectric Point (pI)

58.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 71, 92
AcyI GRCGYC 1 cut(s) 48
AluBI AGCT 2 cut(s) 116, 150
AluI AGCT 2 cut(s) 116, 150
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 2 cut(s) 37, 81
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
AsuHPI GGTGA 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 177
BccI CCATC 1 cut(s) 88
BcoDI GTCTC 2 cut(s) 37, 81
BmiI GGNNCC 2 cut(s) 87, 131
BsaHI GRCGYC 1 cut(s) 48
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bse118I RCCGGY 1 cut(s) 50
BseGI GGATG 1 cut(s) 129
BseRI GAGGAG 3 cut(s) 14, 127, 142
BsiHKAI GWGCWC 1 cut(s) 177
BsiSI CCGG 2 cut(s) 51, 89
BsmAI GTCTC 2 cut(s) 37, 81
BsmBI CGTCTC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 1 cut(s) 144
BspACI CCGC 2 cut(s) 71, 92
BspLI GGNNCC 2 cut(s) 87, 131
BsrFI RCCGGY 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 50
BssMI GATC 1 cut(s) 144
BssNI GRCGYC 1 cut(s) 48
BstACI GRCGYC 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 52
BstF5I GGATG 1 cut(s) 129
BstKTI GATC 1 cut(s) 147
BstMAI GTCTC 2 cut(s) 37, 81
BstMBI GATC 1 cut(s) 144
BstMWI GCNNNNNNNGC 1 cut(s) 181
BtsCI GGATG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 50
CseI GACGC 1 cut(s) 56
CviJI RGCY 5 cut(s) 54, 116, 132, 150, 184
CviKI_1 RGCY 5 cut(s) 54, 116, 132, 150, 184
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
Esp3I CGTCTC 1 cut(s) 37
FokI GGATG 1 cut(s) 136
HapII CCGG 2 cut(s) 51, 89
HgaI GACGC 1 cut(s) 56
Hin1I GRCGYC 1 cut(s) 48
HindIII AAGCTT 1 cut(s) 114
HinfI GANTC 2 cut(s) 74, 99
HpaII CCGG 2 cut(s) 51, 89
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 40
Hpy8I GTNNAC 1 cut(s) 40
Hpy99I CGWCG 3 cut(s) 50, 62, 145
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
Hsp92I GRCGYC 1 cut(s) 48
KroI GCCGGC 1 cut(s) 50
KroNI GCCGGC 1 cut(s) 52
Kzo9I GATC 1 cut(s) 144
LmnI GCTCC 1 cut(s) 129
LpnPI CCDG 4 cut(s) 64, 102, 117, 155
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 177
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 6 cut(s) 32, 35, 114, 120, 148, 157
MroNI GCCGGC 1 cut(s) 50
MslI CAYNNNNRTG 1 cut(s) 164
MspI CCGG 2 cut(s) 51, 89
MwoI GCNNNNNNNGC 1 cut(s) 181
NaeI GCCGGC 1 cut(s) 52
NdeII GATC 1 cut(s) 144
NgoMIV GCCGGC 1 cut(s) 50
NlaIV GGNNCC 2 cut(s) 87, 131
PcsI WCGNNNNNNNCGW 3 cut(s) 54, 63, 159
PdiI GCCGGC 1 cut(s) 52
PfeI GAWTC 1 cut(s) 99
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PspN4I GGNNCC 2 cut(s) 87, 131
RseI CAYNNNNRTG 1 cut(s) 164
Sau3AI GATC 1 cut(s) 144
SchI GAGTC 1 cut(s) 83
SduI GDGCHC 1 cut(s) 177
SetI ASST 3 cut(s) 118, 152, 168
SgeI CNNG 8 cut(s) 56, 63, 101, 116, 125, 151, 175, 182
SmiMI CAYNNNNRTG 1 cut(s) 164
SsiI CCGC 2 cut(s) 71, 92
TaqI TCGA 4 cut(s) 57, 97, 140, 162
TfiI GAWTC 1 cut(s) 99
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.