Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001155

Physical Location & Seq

Genomic Coordinates Forward (+)

24393626 .. 24394092

Gene Structure 467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00303890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCACGAGTCAGTACTACTGCTCTTGTTGTGATTGCCATTTTCGTTGTTTTTCCGAGCATGGTTTTGGCAAAACAATATATTGTCGGAGACGATCAAGGCTGGGAGGGTACTGTTGATTATCAAGCTTGGGCAGATCGCAAAACTTTCCATGTTGGAGATGTTTTAATCTTCAATTACGAAGCTGGTAACCACGATGTTGCTCAATCAGCCAGTGCTGATGAGTTCAATGACTGTGCTTCATCTCCAGACTTGGGTACATATACTAGTGGCCGCGACGCGCTAGCCTTGAACGTCGCTGGAACCTACTATTTCTTATGTGACTATCACTGCGCTGTAGCTCAGCAAAAGTTTATGGTCACTGTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

123

Amino Acids

13.46

Weight (kDa)

4.4

Isoelectric Point (pI)

19.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	37 - 111	4.1e-20	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001155)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12420 FvH4_7g12430 FvH4_7g12440
malus_domestica	MD02G1199200.v1.1
prunus_persica	Prupe.2G149200_v2.0.a1
pyrus_communis	pycom02g16320 pycom02g16340
rosa_chinensis	RchiOBHm_Chr1g0351161 RchiOBHm_Chr1g0351231 RchiOBHm_Chr1g0351241 RchiOBHm_Chr1g0351251 RchiOBHm_Chr1g0351261 RchiOBHm_Chr1g0351271 RchiOBHm_Chr1g0351311 RchiOBHm_Chr1g0352011 RchiOBHm_Chr1g0352031 RchiOBHm_Chr1g0352041
rosa_laevigata	RLG00000001967 RLG00000028366
rosa_multiflora	Rmu_sc0002464.1_g000001 Rmu_sc0003271.1_g000014 Rmu_sc0003700.1_g000010 Rmu_sc0009891.1_g000010
rosa_roxburghii	Rroxscaffold_4G00303340 Rroxscaffold_4G00303890 Rroxscaffold_4G00303920 Rroxscaffold_4G00303940 Rroxscaffold_4G00303950
rosa_rugosa	Rorug01G0217100 Rorug01G0217200 Rorug01G0217300 Rorug01G0223600
rosa_samantha	Rh1BG201800 Rh1BG201900 Rh1BG202000 Rh1BG202300 Rh1BG207900 Rh1BG208300 Rh1CG215300 Rh1CG215800 Rh1CG215900 Rh1CG216200 Rh1CG216400 Rh1CG216500 Rh1CG216700 Rh1CG222000 Rh1CG222500 Rh1DG229100 Rh1DG229200 Rh1DG229300 Rh1DG229500 Rh1DG234900
rosa_wichuraiana	Rw1G020120 Rw1G020140 Rw1G020160 Rw1G020200 Rw1G020660 Rw1G020670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	276, 281
AciI	CCGC	1 cut(s)	274
AcoI	YGGCCR	1 cut(s)	271
AfaI	GTAC	3 cut(s)	16, 112, 259
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	3 cut(s)	175, 229, 292
AhlI	ACTAGT	1 cut(s)	266
AluBI	AGCT	3 cut(s)	128, 185, 341
AluI	AGCT	3 cut(s)	128, 185, 341
Alw26I	GTCTC	1 cut(s)	84
AoxI	GGCC	1 cut(s)	271
AspLEI	GCGC	2 cut(s)	283, 335
AsuNHI	GCTAGC	1 cut(s)	283
BauI	CACGAG	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	84
BcuI	ACTAGT	1 cut(s)	266
BfaI	CTAG	3 cut(s)	267, 284, 370
BfmI	CTRYAG	1 cut(s)	336
BisI	GCNGC	1 cut(s)	274
BlpI	GCTNAGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	275
BmcAI	AGTACT	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	304
BmtI	GCTAGC	1 cut(s)	287
BpmI	CTGGAG	1 cut(s)	231
Bpu1102I	GCTNAGC	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	356
BseNI	ACTGG	1 cut(s)	213
BseYI	CCCAGC	1 cut(s)	102
Bsh1236I	CGCG	2 cut(s)	276, 281
BshFI	GGCC	1 cut(s)	273
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	1 cut(s)	84
BsmBI	CGTCTC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	273
Bsp143I	GATC	2 cut(s)	94, 136
Bsp1720I	GCTNAGC	1 cut(s)	342
BspACI	CCGC	1 cut(s)	274
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	1 cut(s)	355
BspFNI	CGCG	2 cut(s)	276, 281
BspLI	GGNNCC	1 cut(s)	304
BspOI	GCTAGC	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	213
BssMI	GATC	2 cut(s)	94, 136
BssSI	CACGAG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	6
Bst4CI	ACNGT	3 cut(s)	115, 236, 364
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	1 cut(s)	342
BstEII	GGTNACC	1 cut(s)	188
BstFNI	CGCG	2 cut(s)	276, 281
BstHHI	GCGC	2 cut(s)	283, 335
BstKTI	GATC	2 cut(s)	97, 139
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	2 cut(s)	94, 136
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstPI	GGTNACC	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	336
BstUI	CGCG	2 cut(s)	276, 281
BsuRI	GGCC	1 cut(s)	273
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	3 cut(s)	220, 328, 360
Cac8I	GCNNGC	1 cut(s)	285
CfoI	GCGC	2 cut(s)	283, 335
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	3 cut(s)	15, 111, 258
CviAII	CATG	2 cut(s)	61, 152
CviJI	RGCY	7 cut(s)	102, 128, 185, 212, 273, 287, 341
CviKI_1	RGCY	7 cut(s)	102, 128, 185, 212, 273, 287, 341
CviQI	GTAC	3 cut(s)	15, 111, 258
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	2 cut(s)	96, 138
DpnII	GATC	2 cut(s)	94, 136
EaeI	YGGCCR	1 cut(s)	271
Eco91I	GGTNACC	1 cut(s)	188
EcoO65I	GGTNACC	1 cut(s)	188
Esp3I	CGTCTC	1 cut(s)	84
FaeI	CATG	2 cut(s)	64, 155
FaiI	YATR	7 cut(s)	62, 81, 153, 262, 264, 319, 356
FatI	CATG	2 cut(s)	60, 151
Fnu4HI	GCNGC	1 cut(s)	274
Fsp4HI	GCNGC	1 cut(s)	274
FspBI	CTAG	3 cut(s)	267, 284, 370
GlaI	GCGC	2 cut(s)	282, 334
GluI	GCNGC	1 cut(s)	274
GsaI	CCCAGC	1 cut(s)	106
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	273
HgaI	GACGC	1 cut(s)	287
HhaI	GCGC	2 cut(s)	283, 335
Hin1II	CATG	2 cut(s)	64, 155
Hin6I	GCGC	2 cut(s)	281, 333
HinP1I	GCGC	2 cut(s)	281, 333
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	1 cut(s)	9
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	2 cut(s)	57, 89
Hpy188III	TCNNGA	1 cut(s)	248
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	2 cut(s)	281, 299
HpyCH4III	ACNGT	3 cut(s)	115, 236, 364
HpyCH4IV	ACGT	1 cut(s)	294
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	2 cut(s)	64, 155
HspAI	GCGC	2 cut(s)	281, 333
Kzo9I	GATC	2 cut(s)	94, 136
LpnPI	CCDG	5 cut(s)	88, 171, 226, 261, 285
MaeI	CTAG	3 cut(s)	267, 284, 370
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	3 cut(s)	188, 320, 358
MalI	GATC	2 cut(s)	96, 138
MboI	GATC	2 cut(s)	94, 136
MboII	GAAGA	1 cut(s)	163
MluCI	AATT	1 cut(s)	175
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	2 cut(s)	67, 136
MnlI	CCTC	1 cut(s)	100
MseI	TTAA	1 cut(s)	167
MvnI	CGCG	2 cut(s)	276, 281
MwoI	GCNNNNNNNGC	1 cut(s)	209
NdeII	GATC	2 cut(s)	94, 136
NheI	GCTAGC	1 cut(s)	283
NlaIII	CATG	2 cut(s)	64, 155
NlaIV	GGNNCC	1 cut(s)	304
NmuCI	GTSAC	2 cut(s)	320, 358
PkrI	GCNGC	1 cut(s)	275
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
PspEI	GGTNACC	1 cut(s)	188
PspFI	CCCAGC	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	304
RsaI	GTAC	3 cut(s)	16, 112, 259
RsaNI	GTAC	3 cut(s)	15, 111, 258
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	1 cut(s)	274
Sau3AI	GATC	2 cut(s)	94, 136
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	1 cut(s)	18
SetI	ASST	5 cut(s)	130, 187, 297, 308, 343
SfcI	CTRYAG	1 cut(s)	336
SpeI	ACTAGT	1 cut(s)	266
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	1 cut(s)	274
SspMI	CTAG	3 cut(s)	267, 284, 370
TaaI	ACNGT	3 cut(s)	115, 236, 364
TaiI	ACGT	1 cut(s)	297
TasI	AATT	1 cut(s)	175
TatI	WGTACW	1 cut(s)	14
TauI	GCSGC	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TscAI	CASTG	3 cut(s)	220, 335, 367
TseFI	GTSAC	2 cut(s)	320, 358
Tsp45I	GTSAC	2 cut(s)	320, 358
TspDTI	ATGAA	1 cut(s)	231
TspRI	CASTG	3 cut(s)	220, 335, 367
XspI	CTAG	3 cut(s)	267, 284, 370
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.