RchiOBHm_Chr1g0351261

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001155
Physical Location & Seq
Reverse (-)
44512362 .. 44514390
2029 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57705

Sequence Viewer

Length: 369 bp
ATGGCGCGAATAACTGCTGCATTTGCTGTGATTGCCTTGTTTGCTGTATTTCCGAGCATGGAGGCAACGCAGTACATTGTTGGTGATGACCGGGGTTGGAGTTCTAATGTTGATTACTACTCTTGGATTGCTGACAAAACTTTTCATGTTGGAGATTCTTTAGTTTTCAATTATCCAACAATGATGCGTCACAATGTGCTTGTAGCAGCTAATTTTGATGTGTATGATAATTGTGATGCTGCTCCAAATTATGGGATCTGGACAAGTGGCAACGATGTCTTTACCTTGCCCACCACGGGTACCTATTATTTCACATGTGAATATGATTGCGACGTAGGGCAGAAGATTATGGTGGAAGTGAATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

122

Amino Acids

13.69

Weight (kDa)

4.15

Isoelectric Point (pI)

20.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 111 1.7e-15 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 299
AccB7I CCANNNNNTGG 1 cut(s) 251
AccII CGCG 1 cut(s) 7
AclWI GGATC 1 cut(s) 263
AdeI CACNNNGTG 1 cut(s) 196
AfaI GTAC 2 cut(s) 74, 301
AfiI CCNNNNNNNGG 2 cut(s) 251, 296
AflIII ACRYGT 1 cut(s) 314
AgsI TTSAA 1 cut(s) 169
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
AlwI GGATC 1 cut(s) 263
ApeKI GCWGC 3 cut(s) 17, 206, 239
Asp718I GGTACC 1 cut(s) 299
AspLEI GCGC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 95
BanI GGYRCC 1 cut(s) 299
BbvI GCAGC 3 cut(s) 4, 218, 226
BcnI CCSGG 1 cut(s) 92
BisI GCNGC 3 cut(s) 18, 207, 240
BlsI GCNGC 3 cut(s) 19, 208, 241
Bme1390I CCNGG 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 301
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 2 cut(s) 174, 226
BpuMI CCSGG 1 cut(s) 92
BsaJI CCNNGG 2 cut(s) 91, 294
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 296
BseDI CCNNGG 2 cut(s) 91, 294
BseLI CCNNNNNNNGG 2 cut(s) 251, 296
BseXI GCAGC 3 cut(s) 4, 218, 226
Bsh1236I CGCG 1 cut(s) 7
BshNI GGYRCC 1 cut(s) 299
BsiSI CCGG 1 cut(s) 91
BslI CCNNNNNNNGG 2 cut(s) 251, 296
Bsp143I GATC 1 cut(s) 255
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 301
BspPI GGATC 1 cut(s) 263
BspT107I GGYRCC 1 cut(s) 299
BssECI CCNNGG 2 cut(s) 91, 294
BssMI GATC 1 cut(s) 255
BstDSI CCRYGG 1 cut(s) 294
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 258
BstMBI GATC 1 cut(s) 255
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 41
BstNSI RCATGY 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 90
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 3 cut(s) 4, 218, 226
BstX2I RGATCY 1 cut(s) 255
BstYI RGATCY 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 294
CfoI GCGC 1 cut(s) 7
CseI GACGC 1 cut(s) 176
Csp6I GTAC 2 cut(s) 73, 300
CviAII CATG 3 cut(s) 58, 146, 315
CviJI RGCY 1 cut(s) 209
CviKI_1 RGCY 1 cut(s) 209
CviQI GTAC 2 cut(s) 73, 300
DpnI GATC 1 cut(s) 257
DpnII GATC 1 cut(s) 255
DraIII CACNNNGTG 1 cut(s) 196
FaeI CATG 3 cut(s) 61, 149, 318
FaiI YATR 7 cut(s) 59, 147, 225, 252, 316, 324, 350
FatI CATG 3 cut(s) 57, 145, 314
Fnu4HI GCNGC 3 cut(s) 18, 207, 240
Fsp4HI GCNGC 3 cut(s) 18, 207, 240
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 18, 207, 240
HapII CCGG 1 cut(s) 91
HgaI GACGC 1 cut(s) 176
HhaI GCGC 1 cut(s) 7
Hin1II CATG 3 cut(s) 61, 149, 318
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 1 cut(s) 155
HpaII CCGG 1 cut(s) 91
HphI GGTGA 1 cut(s) 95
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 1 cut(s) 259
Hpy99I CGWCG 1 cut(s) 335
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 41
HpySE526I ACGT 1 cut(s) 333
Hsp92II CATG 3 cut(s) 61, 149, 318
HspAI GCGC 1 cut(s) 5
KpnI GGTACC 1 cut(s) 303
Kzo9I GATC 1 cut(s) 255
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 2 cut(s) 104, 244
Lsp1109I GCAGC 3 cut(s) 4, 218, 226
LweI GCATC 2 cut(s) 174, 226
MaeII ACGT 1 cut(s) 333
MaeIII GTNAC 1 cut(s) 188
MalI GATC 1 cut(s) 257
MboI GATC 1 cut(s) 255
MboII GAAGA 1 cut(s) 355
MflI RGATCY 1 cut(s) 255
MluCI AATT 4 cut(s) 169, 211, 229, 247
MmeI TCCRAC 3 cut(s) 77, 130, 200
MnlI CCTC 1 cut(s) 55
MspI CCGG 1 cut(s) 91
MspR9I CCNGG 1 cut(s) 92
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 41
NciI CCSGG 1 cut(s) 92
NdeII GATC 1 cut(s) 255
NlaIII CATG 3 cut(s) 61, 149, 318
NlaIV GGNNCC 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 188
NspI RCATGY 1 cut(s) 318
PciI ACATGT 1 cut(s) 314
PfeI GAWTC 1 cut(s) 155
PflMI CCANNNNNTGG 1 cut(s) 251
PkrI GCNGC 3 cut(s) 19, 208, 241
PscI ACATGT 1 cut(s) 314
PspN4I GGNNCC 1 cut(s) 301
PsuI RGATCY 1 cut(s) 255
RsaI GTAC 2 cut(s) 74, 301
RsaNI GTAC 2 cut(s) 73, 300
SatI GCNGC 3 cut(s) 18, 207, 240
Sau3AI GATC 1 cut(s) 255
ScrFI CCNGG 1 cut(s) 92
SetI ASST 4 cut(s) 211, 287, 305, 336
SfaNI GCATC 2 cut(s) 174, 226
Sse9I AATT 4 cut(s) 169, 211, 229, 247
StyD4I CCNGG 1 cut(s) 90
TaiI ACGT 1 cut(s) 336
TasI AATT 4 cut(s) 169, 211, 229, 247
TatI WGTACW 1 cut(s) 72
TfiI GAWTC 1 cut(s) 155
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 3 cut(s) 17, 206, 239
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 134
Van91I CCANNNNNTGG 1 cut(s) 251
XceI RCATGY 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.