Rh1DG229300

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001155
Physical Location & Seq
Reverse (-)
44108460 .. 44119496
11037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG229300.1

Sequence Viewer

Length: 483 bp
ATGGCGCGGATCACTGCTGCACTTGCTGTGATTGCCTTGTTTGCTGTATTTCCGAGCATGGAGGCAACGCAGTATATTGTTGGTGATGACCGGGGTTGGAGTTCTAATGTTGATTACTACTCTTGGATTGCTGGCAAAACTTTTCATGTTGGAGATTCTTTAGTTTTCAATTATCCAACTATGATGCGTCACAACGTGCTTGTAGCAGCTAATTCTGATGTGTATGATAATTGTGATGCTGCTCCAAACTATGGGATCAGGACAAGTGGCAGCGATGTCTTTACCTTGCCCACCACGGACAGACACTCTCTCTCCCTCCTCTCCGTCTCTGTTCACCACGACGCCGGCTTCGACGACTACGAAGCGGAGTCTCCATCGGTTCCGGCGGTTCGATTCCCTGTGGCACAAGCTTTGAGGATGAGGAGCCACTCCTCGACGATCAGCTTCGTCATCATCGAGGTGCTGGTGCTCTTTAGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

160

Amino Acids

17.62

Weight (kDa)

5.32

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 102 1.3e-11 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 251
AccII CGCG 1 cut(s) 7
AciI CCGC 3 cut(s) 7, 365, 386
AclWI GGATC 2 cut(s) 17, 263
AcyI GRCGYC 1 cut(s) 342
AdeI CACNNNGTG 1 cut(s) 196
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 1 cut(s) 169
AluBI AGCT 3 cut(s) 209, 410, 444
AluI AGCT 3 cut(s) 209, 410, 444
Alw21I GWGCWC 1 cut(s) 471
Alw26I GTCTC 2 cut(s) 331, 375
AlwI GGATC 2 cut(s) 17, 263
ApeKI GCWGC 4 cut(s) 17, 206, 239, 270
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AspLEI GCGC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 2 cut(s) 95, 326
Bbv12I GWGCWC 1 cut(s) 471
BbvI GCAGC 4 cut(s) 4, 218, 226, 282
BccI CCATC 1 cut(s) 382
BcnI CCSGG 1 cut(s) 92
BcoDI GTCTC 2 cut(s) 331, 375
BisI GCNGC 4 cut(s) 18, 207, 240, 271
BlsI GCNGC 4 cut(s) 19, 208, 241, 272
Bme1390I CCNGG 1 cut(s) 92
BmiI GGNNCC 2 cut(s) 381, 425
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 2 cut(s) 174, 226
BpuMI CCSGG 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 342
BsaJI CCNNGG 2 cut(s) 91, 294
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse118I RCCGGY 1 cut(s) 344
BseDI CCNNGG 2 cut(s) 91, 294
BseGI GGATG 1 cut(s) 423
BseLI CCNNNNNNNGG 1 cut(s) 251
BseRI GAGGAG 3 cut(s) 308, 421, 436
BseXI GCAGC 4 cut(s) 4, 218, 226, 282
Bsh1236I CGCG 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 471
BsiSI CCGG 3 cut(s) 91, 345, 383
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 2 cut(s) 331, 375
BsmBI CGTCTC 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 471
Bsp143I GATC 3 cut(s) 9, 255, 438
BspACI CCGC 3 cut(s) 7, 365, 386
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 381, 425
BspPI GGATC 2 cut(s) 17, 263
BsrFI RCCGGY 1 cut(s) 344
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 2 cut(s) 91, 294
BssMI GATC 3 cut(s) 9, 255, 438
BssNI GRCGYC 1 cut(s) 342
BstACI GRCGYC 1 cut(s) 342
BstC8I GCNNGC 2 cut(s) 133, 346
BstDSI CCRYGG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 423
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 12, 258, 441
BstMAI GTCTC 2 cut(s) 331, 375
BstMBI GATC 3 cut(s) 9, 255, 438
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 41, 475
BstSCI CCNGG 1 cut(s) 90
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 4 cut(s) 4, 218, 226, 282
BtgI CCRYGG 1 cut(s) 294
BtgZI GCGATG 1 cut(s) 288
BtsCI GGATG 1 cut(s) 423
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 2 cut(s) 133, 346
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 344
CseI GACGC 2 cut(s) 176, 350
CviAII CATG 2 cut(s) 58, 146
CviJI RGCY 6 cut(s) 209, 348, 410, 426, 444, 478
CviKI_1 RGCY 6 cut(s) 209, 348, 410, 426, 444, 478
DpnI GATC 3 cut(s) 11, 257, 440
DpnII GATC 3 cut(s) 9, 255, 438
DraIII CACNNNGTG 1 cut(s) 196
Esp3I CGTCTC 1 cut(s) 331
FaeI CATG 2 cut(s) 61, 149
FaiI YATR 6 cut(s) 59, 75, 147, 182, 225, 252
FatI CATG 2 cut(s) 57, 145
Fnu4HI GCNGC 4 cut(s) 18, 207, 240, 271
FokI GGATG 1 cut(s) 430
Fsp4HI GCNGC 4 cut(s) 18, 207, 240, 271
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 18, 207, 240, 271
HapII CCGG 3 cut(s) 91, 345, 383
HgaI GACGC 2 cut(s) 176, 350
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 342
Hin1II CATG 2 cut(s) 61, 149
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 408
HinfI GANTC 3 cut(s) 155, 368, 393
HpaII CCGG 3 cut(s) 91, 345, 383
HphI GGTGA 2 cut(s) 95, 326
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 2 cut(s) 54, 217
Hpy188III TCNNGA 1 cut(s) 259
Hpy8I GTNNAC 1 cut(s) 334
Hpy99I CGWCG 3 cut(s) 344, 356, 439
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 41, 475
HpySE526I ACGT 1 cut(s) 195
Hsp92I GRCGYC 1 cut(s) 342
Hsp92II CATG 2 cut(s) 61, 149
HspAI GCGC 1 cut(s) 5
KroI GCCGGC 1 cut(s) 344
KroNI GCCGGC 1 cut(s) 346
Kzo9I GATC 3 cut(s) 9, 255, 438
LmnI GCTCC 2 cut(s) 247, 423
LpnPI CCDG 7 cut(s) 104, 117, 244, 358, 396, 411, 449
Lsp1109I GCAGC 4 cut(s) 4, 218, 226, 282
LweI GCATC 2 cut(s) 174, 226
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 188
MalI GATC 3 cut(s) 11, 257, 440
MboI GATC 3 cut(s) 9, 255, 438
MhlI GDGCHC 1 cut(s) 471
MluCI AATT 3 cut(s) 169, 211, 229
MlyI GAGTC 1 cut(s) 377
MmeI TCCRAC 3 cut(s) 77, 130, 200
MnlI CCTC 7 cut(s) 55, 326, 329, 408, 414, 442, 451
MroNI GCCGGC 1 cut(s) 344
MslI CAYNNNNRTG 1 cut(s) 458
MspI CCGG 3 cut(s) 91, 345, 383
MspR9I CCNGG 1 cut(s) 92
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 41, 475
NaeI GCCGGC 1 cut(s) 346
NciI CCSGG 1 cut(s) 92
NdeII GATC 3 cut(s) 9, 255, 438
NgoMIV GCCGGC 1 cut(s) 344
NlaIII CATG 2 cut(s) 61, 149
NlaIV GGNNCC 2 cut(s) 381, 425
NmuCI GTSAC 1 cut(s) 188
PcsI WCGNNNNNNNCGW 3 cut(s) 348, 357, 453
PdiI GCCGGC 1 cut(s) 346
PfeI GAWTC 2 cut(s) 155, 393
PflMI CCANNNNNTGG 1 cut(s) 251
PkrI GCNGC 4 cut(s) 19, 208, 241, 272
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
PspN4I GGNNCC 2 cut(s) 381, 425
RseI CAYNNNNRTG 1 cut(s) 458
SatI GCNGC 4 cut(s) 18, 207, 240, 271
Sau3AI GATC 3 cut(s) 9, 255, 438
SchI GAGTC 1 cut(s) 377
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 1 cut(s) 471
SetI ASST 6 cut(s) 198, 211, 287, 412, 446, 462
SfaNI GCATC 2 cut(s) 174, 226
SmiMI CAYNNNNRTG 1 cut(s) 458
Sse9I AATT 3 cut(s) 169, 211, 229
SsiI CCGC 3 cut(s) 7, 365, 386
StyD4I CCNGG 1 cut(s) 90
TaiI ACGT 1 cut(s) 198
TaqI TCGA 4 cut(s) 351, 391, 434, 456
TasI AATT 3 cut(s) 169, 211, 229
TfiI GAWTC 2 cut(s) 155, 393
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 4 cut(s) 17, 206, 239, 270
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 134
TspGWI ACGGA 2 cut(s) 311, 313
TspRI CASTG 1 cut(s) 19
Van91I CCANNNNNTGG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.