Rh1DG234900

Basic blue protein-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
44792086 .. 44839867
47782 bp
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UTR
Exon/CDS
Intron
Rh1DG234900.1

Sequence Viewer

Length: 369 bp
ATGGCACGAGTCAGTACTGTTCTGGTGTTGATTGCCTTCTTCGTTGTTTTTCCGAGCATGGTTTTGGCGACACAATATGTTGTTGGAGATGATTTAGGCTGGAATGGTGATGCTGATTACGAGGGTTGGGTTGCTGACAAAAGTTTCTTTGTTGGAGATGTTTTAGTTTTCAATTACGTTGCAACTGACCACAACGTTGTTATAGCTACTAATGGTGACAATTATGACAATTGTGTTGCATCTCCAAACTTTGGTGTGTACGACAGTGGGAATGATGCAATAACATTGAATGAAGCTGGAACTTACTACTTCTTATGTTCATATCATTGCGACTATCTGCAACAGAAAGTTATGGTCACTGTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

122

Amino Acids

13.47

Weight (kDa)

4.05

Isoelectric Point (pI)

20.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 35 - 109 2.2e-18 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 251
AclI AACGTT 1 cut(s) 195
AfaI GTAC 2 cut(s) 16, 260
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 2 cut(s) 172, 289
AluBI AGCT 2 cut(s) 206, 296
AluI AGCT 2 cut(s) 206, 296
AsuHPI GGTGA 2 cut(s) 119, 227
BauI CACGAG 1 cut(s) 6
BfaI CTAG 1 cut(s) 367
BmcAI AGTACT 1 cut(s) 16
BmsI GCATC 3 cut(s) 100, 248, 265
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 325
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMI GCAATG 1 cut(s) 325
BslI CCNNNNNNNGG 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 325
BssSI CACGAG 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 6
Bst4CI ACNGT 3 cut(s) 19, 266, 361
BtsIMutI CAGTG 2 cut(s) 271, 357
Csp6I GTAC 2 cut(s) 15, 259
CviAII CATG 1 cut(s) 58
CviJI RGCY 3 cut(s) 99, 206, 296
CviKI_1 RGCY 3 cut(s) 99, 206, 296
CviQI GTAC 2 cut(s) 15, 259
FaeI CATG 1 cut(s) 61
FaiI YATR 7 cut(s) 59, 78, 203, 225, 316, 322, 353
FatI CATG 1 cut(s) 57
FspBI CTAG 1 cut(s) 367
Hin1II CATG 1 cut(s) 61
HinfI GANTC 1 cut(s) 9
HphI GGTGA 2 cut(s) 119, 227
Hpy166II GTNNAC 2 cut(s) 259, 364
Hpy188I TCNGA 1 cut(s) 54
Hpy8I GTNNAC 2 cut(s) 259, 364
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 3 cut(s) 19, 266, 361
HpyCH4IV ACGT 2 cut(s) 177, 195
HpyCH4V TGCA 4 cut(s) 182, 239, 278, 340
HpySE526I ACGT 2 cut(s) 177, 195
Hsp92II CATG 1 cut(s) 61
LpnPI CCDG 3 cut(s) 8, 85, 282
LweI GCATC 3 cut(s) 100, 248, 265
MaeI CTAG 1 cut(s) 367
MaeII ACGT 2 cut(s) 177, 195
MaeIII GTNAC 2 cut(s) 215, 355
MboII GAAGA 1 cut(s) 31
MfeI CAATTG 1 cut(s) 229
MluCI AATT 3 cut(s) 172, 220, 229
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 2 cut(s) 64, 133
MnlI CCTC 1 cut(s) 115
MunI CAATTG 1 cut(s) 229
NlaIII CATG 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 215, 355
PflMI CCANNNNNTGG 1 cut(s) 251
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
Psp1406I AACGTT 1 cut(s) 195
RsaI GTAC 2 cut(s) 16, 260
RsaNI GTAC 2 cut(s) 15, 259
ScaI AGTACT 1 cut(s) 16
SchI GAGTC 1 cut(s) 18
SetI ASST 4 cut(s) 180, 198, 208, 298
SfaNI GCATC 3 cut(s) 100, 248, 265
SgeI CNNG 8 cut(s) 18, 20, 35, 66, 70, 112, 133, 309
Sse9I AATT 3 cut(s) 172, 220, 229
SspMI CTAG 1 cut(s) 367
TaaI ACNGT 3 cut(s) 19, 266, 361
TaiI ACGT 2 cut(s) 180, 198
TasI AATT 3 cut(s) 172, 220, 229
TatI WGTACW 1 cut(s) 14
TscAI CASTG 2 cut(s) 271, 364
TseFI GTSAC 2 cut(s) 215, 355
Tsp45I GTSAC 2 cut(s) 215, 355
TspDTI ATGAA 2 cut(s) 306, 309
TspRI CASTG 2 cut(s) 271, 364
Van91I CCANNNNNTGG 1 cut(s) 251
XspI CTAG 1 cut(s) 367
ZrmI AGTACT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.