Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001155

Physical Location & Seq

Genomic Coordinates Forward (+)

13437653 .. 13438272

Gene Structure 620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g16320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCACGAGTTGCTTATCTTCTCGTGGTTGCGCTTCTCGTTCTTCCTAGCGCGGTTTTCGCGACACAGTATGTCGTCGGAGATGACCAAGGCTGGAATTCTGGAGTTGATTACTACGCTTGGGTTGAAGGAAAAACATTCCATGTTGGAGATTCATTAGGTGAGCACAATGTGATTGTAGTTGGTTCTAATGGGTACGATCAATGTCTTGCATCTCCAAACAGCGGTGCCTATTACAGTGGTAACGACGTACTAACGTTTGTCGCTGCCGGGGACTTCTACTTCATCTGTGAATATCACTGCGATTACAGCGACCAGAAGGTTAAGGTCACCGTAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

114

Amino Acids

12.32

Weight (kDa)

4.31

Isoelectric Point (pI)

24.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	32 - 101	1.4e-11	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001155)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12420 FvH4_7g12430 FvH4_7g12440
malus_domestica	MD02G1199200.v1.1
prunus_persica	Prupe.2G149200_v2.0.a1
pyrus_communis	pycom02g16320 pycom02g16340
rosa_chinensis	RchiOBHm_Chr1g0351161 RchiOBHm_Chr1g0351231 RchiOBHm_Chr1g0351241 RchiOBHm_Chr1g0351251 RchiOBHm_Chr1g0351261 RchiOBHm_Chr1g0351271 RchiOBHm_Chr1g0351311 RchiOBHm_Chr1g0352011 RchiOBHm_Chr1g0352031 RchiOBHm_Chr1g0352041
rosa_laevigata	RLG00000001967 RLG00000028366
rosa_multiflora	Rmu_sc0002464.1_g000001 Rmu_sc0003271.1_g000014 Rmu_sc0003700.1_g000010 Rmu_sc0009891.1_g000010
rosa_roxburghii	Rroxscaffold_4G00303340 Rroxscaffold_4G00303890 Rroxscaffold_4G00303920 Rroxscaffold_4G00303940 Rroxscaffold_4G00303950
rosa_rugosa	Rorug01G0217100 Rorug01G0217200 Rorug01G0217300 Rorug01G0223600
rosa_samantha	Rh1BG201800 Rh1BG201900 Rh1BG202000 Rh1BG202300 Rh1BG207900 Rh1BG208300 Rh1CG215300 Rh1CG215800 Rh1CG215900 Rh1CG216200 Rh1CG216400 Rh1CG216500 Rh1CG216700 Rh1CG222000 Rh1CG222500 Rh1DG229100 Rh1DG229200 Rh1DG229300 Rh1DG229500 Rh1DG234900
rosa_wichuraiana	Rw1G020120 Rw1G020140 Rw1G020160 Rw1G020200 Rw1G020660 Rw1G020670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AccII	CGCG	2 cut(s)	53, 62
AciI	CCGC	2 cut(s)	53, 225
AclI	AACGTT	1 cut(s)	257
AcsI	RAATTY	1 cut(s)	97
AdeI	CACNNNGTG	1 cut(s)	172
AfaI	GTAC	2 cut(s)	197, 252
AfiI	CCNNNNNNNGG	1 cut(s)	224
AgsI	TTSAA	1 cut(s)	128
Alw21I	GWGCWC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	97
AspLEI	GCGC	2 cut(s)	34, 53
AsuC2I	CCSGG	1 cut(s)	271
AsuHPI	GGTGA	2 cut(s)	173, 322
BanI	GGYRCC	1 cut(s)	227
BauI	CACGAG	2 cut(s)	6, 23
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	271
BfaI	CTAG	2 cut(s)	48, 340
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	221
BpmI	CTGGAG	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	271
BsaJI	CCNNGG	2 cut(s)	88, 270
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
BseDI	CCNNGG	2 cut(s)	88, 270
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	253
Bsh1236I	CGCG	2 cut(s)	53, 62
BshNI	GGYRCC	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	199
Bsp68I	TCGCGA	1 cut(s)	62
BspACI	CCGC	2 cut(s)	53, 225
BspFNI	CGCG	2 cut(s)	53, 62
BspLI	GGNNCC	1 cut(s)	229
BspT107I	GGYRCC	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	88, 270
BssMI	GATC	1 cut(s)	199
BssSI	CACGAG	2 cut(s)	6, 23
BssT1I	CCWWGG	1 cut(s)	88
Bst2BI	CACGAG	2 cut(s)	6, 23
Bst4CI	ACNGT	3 cut(s)	69, 239, 334
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstEII	GGTNACC	1 cut(s)	328
BstFNI	CGCG	2 cut(s)	53, 62
BstHHI	GCGC	2 cut(s)	34, 53
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 59, 309
BstPI	GGTNACC	1 cut(s)	328
BstSCI	CCNGG	1 cut(s)	269
BstUI	CGCG	2 cut(s)	53, 62
BstV1I	GCAGC	1 cut(s)	253
BtsI	GCAGTG	1 cut(s)	298
BtsIMutI	CAGTG	2 cut(s)	244, 298
BtuMI	TCGCGA	1 cut(s)	62
CfoI	GCGC	2 cut(s)	34, 53
Csp6I	GTAC	2 cut(s)	196, 251
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	1 cut(s)	93
CviKI_1	RGCY	1 cut(s)	93
CviQI	GTAC	2 cut(s)	196, 251
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
DraIII	CACNNNGTG	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	88
Eco91I	GGTNACC	1 cut(s)	328
EcoO65I	GGTNACC	1 cut(s)	328
EcoRI	GAATTC	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	1 cut(s)	146
FaiI	YATR	2 cut(s)	72, 144
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	2 cut(s)	48, 340
GlaI	GCGC	2 cut(s)	33, 52
GluI	GCNGC	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	123
HapII	CCGG	1 cut(s)	270
HhaI	GCGC	2 cut(s)	34, 53
Hin1II	CATG	1 cut(s)	146
Hin6I	GCGC	2 cut(s)	32, 51
HinP1I	GCGC	2 cut(s)	32, 51
HinfI	GANTC	1 cut(s)	152
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	2 cut(s)	173, 322
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	1 cut(s)	80
Hpy188III	TCNNGA	2 cut(s)	61, 102
Hpy8I	GTNNAC	1 cut(s)	337
Hpy99I	CGWCG	2 cut(s)	80, 251
HpyAV	CCTTC	2 cut(s)	122, 313
HpyCH4III	ACNGT	3 cut(s)	69, 239, 334
HpyCH4IV	ACGT	2 cut(s)	249, 257
HpyCH4V	TGCA	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 59, 309
HpySE526I	ACGT	2 cut(s)	249, 257
Hsp92II	CATG	1 cut(s)	146
HspAI	GCGC	2 cut(s)	32, 51
Kzo9I	GATC	1 cut(s)	199
LpnPI	CCDG	4 cut(s)	79, 87, 283, 329
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	2 cut(s)	48, 340
MaeII	ACGT	2 cut(s)	249, 257
MaeIII	GTNAC	2 cut(s)	242, 328
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	2 cut(s)	11, 35
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	1 cut(s)	97
MmeI	TCCRAC	2 cut(s)	58, 127
MseI	TTAA	1 cut(s)	324
MspA1I	CMGCKG	1 cut(s)	225
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	1 cut(s)	271
MvnI	CGCG	2 cut(s)	53, 62
MwoI	GCNNNNNNNGC	3 cut(s)	11, 59, 309
NciI	CCSGG	1 cut(s)	271
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	1 cut(s)	146
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	328
NruI	TCGCGA	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	152
PkrI	GCNGC	1 cut(s)	268
Psp1406I	AACGTT	1 cut(s)	257
PspEI	GGTNACC	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	229
RruI	TCGCGA	1 cut(s)	62
RsaI	GTAC	2 cut(s)	197, 252
RsaNI	GTAC	2 cut(s)	196, 251
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	271
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	5 cut(s)	163, 252, 260, 324, 330
SfaNI	GCATC	1 cut(s)	221
Sse9I	AATT	1 cut(s)	97
SsiI	CCGC	2 cut(s)	53, 225
SspMI	CTAG	2 cut(s)	48, 340
StyD4I	CCNGG	1 cut(s)	269
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	3 cut(s)	69, 239, 334
TaiI	ACGT	2 cut(s)	252, 260
TasI	AATT	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	2 cut(s)	244, 305
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	2 cut(s)	144, 274
TspRI	CASTG	2 cut(s)	244, 305
XapI	RAATTY	1 cut(s)	97
XspI	CTAG	2 cut(s)	48, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.