Rroxscaffold_4G00303950

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001155
Physical Location & Seq
Forward (+)
24463679 .. 24464995
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00303950.1

Sequence Viewer

Length: 435 bp
ATGTATACTCACGGTGCAAGTAGTTTGAGTTTTGAGAACCCTTTGCTCGACTTAAGAGCTAGTCTTGTTGTCATTGCCTTTTCCGTCGTTTTTCCGAGCAAGGTTCTGGCAACAGAATATGTTGTCGGAGACGATCTAGGCTGGGACGGAACTGCTAATTACCAAGCTTGGGCTGATAACCATGCTTTCCATGTTGGAGATGTCTTAATTTTCAATTACGAAGTAGGTGAACACAACGTTCTTTTAGCGGCTGATCCTCTAGGGATTGATACTTGTGTTTCACCTCCAAGCTTGGGTGTGTACGACAGTGGCAATGACGCATTAACCTTGAGCGTTGCTGGAACCTACTACAGTACTACTTATGTGGATATCACTGCGATACACTTCAGCAGAAGTTCTTTATCGTTATGGACTAGATATTGCGCACCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

144

Amino Acids

15.61

Weight (kDa)

4.46

Isoelectric Point (pI)

23.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 50 - 117 5e-12 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 424
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 248
AclI AACGTT 1 cut(s) 237
AclWI GGATC 1 cut(s) 248
AcuI CTGAAG 1 cut(s) 370
AfaI GTAC 2 cut(s) 302, 355
AfiI CCNNNNNNNGG 2 cut(s) 169, 293
AflII CTTAAG 1 cut(s) 52
AgsI TTSAA 1 cut(s) 214
AluBI AGCT 3 cut(s) 59, 167, 291
AluI AGCT 3 cut(s) 59, 167, 291
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 1 cut(s) 248
AspLEI GCGC 1 cut(s) 425
AsuHPI GGTGA 2 cut(s) 239, 273
BaeI ACNNNNGTAYC 2 cut(s) 261, 294
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 4 cut(s) 60, 137, 260, 414
BfmI CTRYAG 1 cut(s) 349
BfrI CTTAAG 1 cut(s) 52
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
BmcAI AGTACT 1 cut(s) 355
BmiI GGNNCC 1 cut(s) 343
BpuEI CTTGAG 1 cut(s) 349
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 293
Bse3DI GCAATG 2 cut(s) 72, 319
BseLI CCNNNNNNNGG 2 cut(s) 169, 293
BseMI GCAATG 2 cut(s) 72, 319
BseYI CCCAGC 1 cut(s) 141
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 2 cut(s) 169, 293
BsmAI GTCTC 1 cut(s) 123
BsmBI CGTCTC 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 158
Bsp143I GATC 2 cut(s) 133, 253
BspACI CCGC 1 cut(s) 248
BspLI GGNNCC 1 cut(s) 343
BspPI GGATC 1 cut(s) 248
BspTI CTTAAG 1 cut(s) 52
BsrDI GCAATG 2 cut(s) 72, 319
BssMI GATC 2 cut(s) 133, 253
BssNAI GTATAC 1 cut(s) 6
Bst1107I GTATAC 1 cut(s) 6
Bst4CI ACNGT 3 cut(s) 14, 308, 353
BstAFI CTTAAG 1 cut(s) 52
BstHHI GCGC 1 cut(s) 425
BstKTI GATC 2 cut(s) 136, 256
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 2 cut(s) 133, 253
BstSFI CTRYAG 1 cut(s) 349
BstZ17I GTATAC 1 cut(s) 6
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 2 cut(s) 313, 372
CfoI GCGC 1 cut(s) 425
CseI GACGC 1 cut(s) 326
Csp6I GTAC 2 cut(s) 301, 354
CviAII CATG 2 cut(s) 182, 191
CviJI RGCY 6 cut(s) 59, 141, 167, 173, 251, 291
CviKI_1 RGCY 6 cut(s) 59, 141, 167, 173, 251, 291
CviQI GTAC 2 cut(s) 301, 354
DpnI GATC 2 cut(s) 135, 255
DpnII GATC 2 cut(s) 133, 253
Eco32I GATATC 1 cut(s) 370
Eco57I CTGAAG 1 cut(s) 370
EcoRV GATATC 1 cut(s) 370
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 2 cut(s) 185, 194
FaiI YATR 6 cut(s) 6, 120, 183, 192, 363, 409
FaqI GGGAC 1 cut(s) 158
FatI CATG 2 cut(s) 181, 190
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 249
FspBI CTAG 4 cut(s) 60, 137, 260, 414
FspI TGCGCA 1 cut(s) 424
GlaI GCGC 1 cut(s) 424
GluI GCNGC 1 cut(s) 249
GsaI CCCAGC 1 cut(s) 145
HgaI GACGC 1 cut(s) 326
HhaI GCGC 1 cut(s) 425
Hin1II CATG 2 cut(s) 185, 194
Hin6I GCGC 1 cut(s) 423
HinP1I GCGC 1 cut(s) 423
HindIII AAGCTT 2 cut(s) 165, 289
HphI GGTGA 2 cut(s) 239, 273
Hpy166II GTNNAC 3 cut(s) 6, 230, 301
Hpy188I TCNGA 2 cut(s) 96, 128
Hpy8I GTNNAC 3 cut(s) 6, 230, 301
Hpy99I CGWCG 1 cut(s) 89
HpyCH4III ACNGT 3 cut(s) 14, 308, 353
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 1 cut(s) 17
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 2 cut(s) 185, 194
HspAI GCGC 1 cut(s) 423
Kzo9I GATC 2 cut(s) 133, 253
LpnPI CCDG 3 cut(s) 92, 127, 324
MaeI CTAG 4 cut(s) 60, 137, 260, 414
MaeII ACGT 1 cut(s) 237
MalI GATC 2 cut(s) 135, 255
MboI GATC 2 cut(s) 133, 253
MluCI AATT 3 cut(s) 157, 207, 214
MmeI TCCRAC 2 cut(s) 106, 175
MnlI CCTC 2 cut(s) 267, 294
MseI TTAA 3 cut(s) 53, 206, 323
MspCI CTTAAG 1 cut(s) 52
NdeII GATC 2 cut(s) 133, 253
NlaIII CATG 2 cut(s) 185, 194
NlaIV GGNNCC 1 cut(s) 343
NsbI TGCGCA 1 cut(s) 424
PkrI GCNGC 1 cut(s) 250
Psp1406I AACGTT 1 cut(s) 237
PspFI CCCAGC 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 343
RsaI GTAC 2 cut(s) 302, 355
RsaNI GTAC 2 cut(s) 301, 354
SaqAI TTAA 3 cut(s) 53, 206, 323
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 2 cut(s) 133, 253
ScaI AGTACT 1 cut(s) 355
SfcI CTRYAG 1 cut(s) 349
SmlI CTYRAG 2 cut(s) 52, 328
SmoI CTYRAG 2 cut(s) 52, 328
Sse9I AATT 3 cut(s) 157, 207, 214
SsiI CCGC 1 cut(s) 248
SspMI CTAG 4 cut(s) 60, 137, 260, 414
TaaI ACNGT 3 cut(s) 14, 308, 353
TaiI ACGT 1 cut(s) 240
TaqI TCGA 1 cut(s) 48
TasI AATT 3 cut(s) 157, 207, 214
TatI WGTACW 1 cut(s) 353
TauI GCSGC 1 cut(s) 251
Tru1I TTAA 3 cut(s) 53, 206, 323
Tru9I TTAA 3 cut(s) 53, 206, 323
TscAI CASTG 2 cut(s) 313, 379
TspGWI ACGGA 2 cut(s) 73, 162
TspRI CASTG 2 cut(s) 313, 379
Vha464I CTTAAG 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 4 cut(s) 60, 137, 260, 414
ZrmI AGTACT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.