Rh1CG215300

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001155
Physical Location & Seq
Reverse (-)
46362338 .. 46380218
17881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG215300.1

Sequence Viewer

Length: 510 bp
ATGGCGCGAATCACTGCTGCTCTTGCTGTGATTGCCTTGTTTGCTGTATTTCCGAGCATGGAGGCAACGCAGTATATTGTTGGTGATGACCAGGGCTGGAGTTATAATGTTGATTACTACTCTTGGATTGCTGGCAAAACTTTTCATGTTGGAGATTCTTTAGTTTTCAATTATGCATCTGAAGAACACAATGTGGTTGTACCAGCAAATTCTGATGTGTATGATAAGTGTGCTACTACTCCAAACTTGGGAGTCTGGACAAGTGGCAGTGACGTATTTACCTTGCCCACCACAGTGAGAGGCTGGGTTGTTGTTGGTGGAGCATTGGAGGGGATTTGGGGTTCTGCCGTAAAGATTGGGATGGTGTATTTGCTGAAACATTCTATGAGATGCTCTAGCATCAAACTGGATGCCGTCATCCTAAGATTTCTCCAGTGGTGGCCTCAGACTAAGGTCCTTCATCCAAAACTTCGCTCTTCATCCCCACCACAGAACAACAACTTAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

169

Amino Acids

18.66

Weight (kDa)

6.89

Isoelectric Point (pI)

32.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 98 3.2e-14 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 105
AccII CGCG 1 cut(s) 7
AcsI RAATTY 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 201
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 248
AgsI TTSAA 1 cut(s) 169
AjnI CCWGG 1 cut(s) 90
AleI CACNNNNGTG 1 cut(s) 293
AloI GAACNNNNNNTCC 2 cut(s) 325, 357
AoxI GGCC 1 cut(s) 440
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 208
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 454
AsuHPI GGTGA 1 cut(s) 95
AvaII GGWCC 1 cut(s) 454
BbvI GCAGC 1 cut(s) 4
BccI CCATC 1 cut(s) 355
BceAI ACGGC 2 cut(s) 332, 398
BciT130I CCWGG 1 cut(s) 92
BfaI CTAG 1 cut(s) 396
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 92
Bme18I GGWCC 1 cut(s) 454
BmgT120I GGNCC 1 cut(s) 454
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 4 cut(s) 185, 380, 400, 408
BoxI GACNNNNGTC 1 cut(s) 452
BpmI CTGGAG 2 cut(s) 118, 416
BsaJI CCNNGG 1 cut(s) 91
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse1I ACTGG 2 cut(s) 411, 433
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 91
BseGI GGATG 5 cut(s) 366, 415, 417, 460, 479
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMII CTCAG 1 cut(s) 458
BseNI ACTGG 2 cut(s) 411, 433
BseXI GCAGC 1 cut(s) 4
BseYI CCCAGC 1 cut(s) 303
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 1 cut(s) 442
BslI CCNNNNNNNGG 1 cut(s) 248
BsnI GGCC 1 cut(s) 442
BspANI GGCC 1 cut(s) 442
BspCNI CTCAG 1 cut(s) 457
BspFNI CGCG 1 cut(s) 7
BspQI GCTCTTC 1 cut(s) 481
BsrI ACTGG 2 cut(s) 411, 433
BssECI CCNNGG 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 1 cut(s) 295
Bst6I CTCTTC 1 cut(s) 481
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 3 cut(s) 422, 444, 450
BstF5I GGATG 5 cut(s) 366, 415, 417, 460, 479
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 1 cut(s) 7
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 41
BstNI CCWGG 1 cut(s) 92
BstPAI GACNNNNGTC 1 cut(s) 452
BstSCI CCNGG 1 cut(s) 90
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 4
BsuRI GGCC 1 cut(s) 442
BtsCI GGATG 5 cut(s) 366, 415, 417, 460, 479
BtsI GCAGTG 2 cut(s) 12, 274
BtsIMutI CAGTG 4 cut(s) 12, 274, 300, 440
Cac8I GCNNGC 1 cut(s) 133
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 454
Csp6I GTAC 1 cut(s) 200
CviAII CATG 2 cut(s) 58, 146
CviJI RGCY 3 cut(s) 96, 303, 442
CviKI_1 RGCY 3 cut(s) 96, 303, 442
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 3 cut(s) 422, 444, 450
DraIII CACNNNGTG 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 481
EarI CTCTTC 1 cut(s) 481
Eco47I GGWCC 1 cut(s) 454
Eco57I CTGAAG 1 cut(s) 201
EcoO109I RGGNCCY 1 cut(s) 454
EcoRII CCWGG 1 cut(s) 90
EcoT22I ATGCAT 1 cut(s) 178
FaeI CATG 2 cut(s) 61, 149
FaiI YATR 7 cut(s) 59, 75, 105, 147, 174, 222, 386
FatI CATG 2 cut(s) 57, 145
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 5 cut(s) 373, 404, 422, 447, 466
Fsp4HI GCNGC 1 cut(s) 18
FspBI CTAG 1 cut(s) 396
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 18
GsaI CCCAGC 1 cut(s) 307
GsuI CTGGAG 2 cut(s) 118, 416
HaeIII GGCC 1 cut(s) 442
HhaI GCGC 1 cut(s) 7
Hin1II CATG 2 cut(s) 61, 149
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 3 cut(s) 9, 155, 252
HphI GGTGA 1 cut(s) 95
Hpy188I TCNGA 4 cut(s) 54, 181, 214, 447
Hpy188III TCNNGA 1 cut(s) 256
HpyAV CCTTC 1 cut(s) 467
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 41
HpyF3I CTNAG 3 cut(s) 422, 444, 450
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 2 cut(s) 61, 149
HspAI GCGC 1 cut(s) 5
LguI GCTCTTC 1 cut(s) 481
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 9 cut(s) 77, 82, 104, 117, 216, 241, 289, 392, 446
Lsp1109I GCAGC 1 cut(s) 4
LweI GCATC 4 cut(s) 185, 380, 400, 408
MaeI CTAG 1 cut(s) 396
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 1 cut(s) 269
MboII GAAGA 2 cut(s) 194, 468
MluCI AATT 3 cut(s) 169, 208, 505
MlyI GAGTC 1 cut(s) 261
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 4 cut(s) 55, 293, 322, 453
Mph1103I ATGCAT 1 cut(s) 178
MseI TTAA 1 cut(s) 503
MslI CAYNNNNRTG 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 41
NlaIII CATG 2 cut(s) 61, 149
NmuCI GTSAC 1 cut(s) 269
NsiI ATGCAT 1 cut(s) 178
OliI CACNNNNGTG 1 cut(s) 293
PciSI GCTCTTC 1 cut(s) 481
PfeI GAWTC 2 cut(s) 9, 155
PkrI GCNGC 1 cut(s) 19
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
PpuMI RGGWCCY 1 cut(s) 454
PshAI GACNNNNGTC 1 cut(s) 452
PsiI TTATAA 1 cut(s) 105
Psp5II RGGWCCY 1 cut(s) 454
Psp6I CCWGG 1 cut(s) 90
PspFI CCCAGC 1 cut(s) 303
PspGI CCWGG 1 cut(s) 90
PspPI GGNCC 1 cut(s) 454
PspPPI RGGWCCY 1 cut(s) 454
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 293
SapI GCTCTTC 1 cut(s) 481
SaqAI TTAA 1 cut(s) 503
SatI GCNGC 1 cut(s) 18
Sau96I GGNCC 1 cut(s) 454
SchI GAGTC 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 92
SetI ASST 3 cut(s) 276, 284, 456
SfaNI GCATC 4 cut(s) 185, 380, 400, 408
SinI GGWCC 1 cut(s) 454
SmiMI CAYNNNNRTG 1 cut(s) 293
Sse9I AATT 3 cut(s) 169, 208, 505
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 295
TaiI ACGT 1 cut(s) 276
TasI AATT 3 cut(s) 169, 208, 505
TfiI GAWTC 2 cut(s) 9, 155
Tru1I TTAA 1 cut(s) 503
Tru9I TTAA 1 cut(s) 503
TscAI CASTG 4 cut(s) 19, 274, 300, 440
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 3 cut(s) 134, 449, 468
TspRI CASTG 4 cut(s) 19, 274, 300, 440
VpaK11BI GGWCC 1 cut(s) 454
XapI RAATTY 1 cut(s) 208
XspI CTAG 1 cut(s) 396
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.