FvH4_7g12430

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001155
Physical Location & Seq
Reverse (-)
11290174 .. 11290694
521 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12430.t1

Sequence Viewer

Length: 369 bp
ATGGCACGAGTGAGCACTGCTCTGGTGTTGATTGCACTCGTCGTTGTTTTTCCGAGCATGGTTTTGGCGACACAATATGTTGTTGGAGATGGTTTAGGCTGGAGTGGTGATGTTAATTACGACGATTGGGTTGATGGCAAAACTTTCTACGTTGGAGATGTTTTAGTTTTCAGTTACATCGCAACTGACCACAACGTTGTTTTAGCTACCAATGAGGACAATTATAACAATTGTGTTGCATCTCCAAACTTGGCTGTGTACGACACTGGCAATGATATACTGACATTGAATGAAGCTGGAACCTACTATTTCTTATGTTCATATCACTGCGACTTTCTTCAGCAGAAGGTTATGATCACTGTGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

123

Amino Acids

13.45

Weight (kDa)

4.05

Isoelectric Point (pI)

26.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 37 - 110 8.2e-20 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 225
AclI AACGTT 1 cut(s) 195
AcuI CTGAAG 1 cut(s) 323
AfaI GTAC 1 cut(s) 260
AgsI TTSAA 1 cut(s) 289
AluBI AGCT 2 cut(s) 206, 296
AluI AGCT 2 cut(s) 206, 296
Alw21I GWGCWC 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 119
BauI CACGAG 1 cut(s) 6
Bbv12I GWGCWC 1 cut(s) 17
BccI CCATC 2 cut(s) 83, 128
BclI TGATCA 1 cut(s) 354
BmiI GGNNCC 1 cut(s) 301
BmsI GCATC 1 cut(s) 248
BplI GAGNNNNNCTC 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 271
Bse3DI GCAATG 1 cut(s) 277
BseMI GCAATG 1 cut(s) 277
BseNI ACTGG 1 cut(s) 271
BsiHKAI GWGCWC 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 1 cut(s) 354
BspLI GGNNCC 1 cut(s) 301
BsrDI GCAATG 1 cut(s) 277
BsrI ACTGG 1 cut(s) 271
BssMI GATC 1 cut(s) 354
BssSI CACGAG 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 361
BstKTI GATC 1 cut(s) 357
BstMBI GATC 1 cut(s) 354
BtgZI GCGATG 1 cut(s) 163
BtsI GCAGTG 2 cut(s) 15, 325
BtsIMutI CAGTG 4 cut(s) 15, 264, 325, 357
Csp6I GTAC 1 cut(s) 259
CviAII CATG 1 cut(s) 58
CviJI RGCY 4 cut(s) 99, 206, 254, 296
CviKI_1 RGCY 4 cut(s) 99, 206, 254, 296
CviQI GTAC 1 cut(s) 259
DpnI GATC 1 cut(s) 356
DpnII GATC 1 cut(s) 354
Eco57I CTGAAG 1 cut(s) 323
FaeI CATG 1 cut(s) 61
FaiI YATR 7 cut(s) 59, 78, 225, 278, 316, 322, 353
FatI CATG 1 cut(s) 57
FbaI TGATCA 1 cut(s) 354
GsuI CTGGAG 1 cut(s) 121
Hin1II CATG 1 cut(s) 61
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 259, 364
Hpy188I TCNGA 1 cut(s) 54
Hpy8I GTNNAC 2 cut(s) 259, 364
Hpy99I CGWCG 2 cut(s) 44, 125
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4IV ACGT 2 cut(s) 150, 195
HpyCH4V TGCA 2 cut(s) 35, 239
HpySE526I ACGT 2 cut(s) 150, 195
Hsp92II CATG 1 cut(s) 61
Ksp22I TGATCA 1 cut(s) 354
Kzo9I GATC 1 cut(s) 354
LpnPI CCDG 4 cut(s) 8, 85, 252, 282
LweI GCATC 1 cut(s) 248
MaeII ACGT 2 cut(s) 150, 195
MaeIII GTNAC 1 cut(s) 173
MalI GATC 1 cut(s) 356
MboI GATC 1 cut(s) 354
MboII GAAGA 1 cut(s) 329
MfeI CAATTG 1 cut(s) 229
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 3 cut(s) 115, 220, 229
MmeI TCCRAC 2 cut(s) 64, 133
MnlI CCTC 1 cut(s) 208
MseI TTAA 1 cut(s) 114
MunI CAATTG 1 cut(s) 229
NdeII GATC 1 cut(s) 354
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 1 cut(s) 301
PsiI TTATAA 1 cut(s) 225
Psp1406I AACGTT 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 301
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SaqAI TTAA 1 cut(s) 114
Sau3AI GATC 1 cut(s) 354
SduI GDGCHC 1 cut(s) 17
SetI ASST 6 cut(s) 153, 198, 208, 298, 305, 351
SfaNI GCATC 1 cut(s) 248
Sse9I AATT 3 cut(s) 115, 220, 229
TaaI ACNGT 1 cut(s) 361
TaiI ACGT 2 cut(s) 153, 198
TasI AATT 3 cut(s) 115, 220, 229
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 4 cut(s) 22, 271, 332, 364
TspDTI ATGAA 2 cut(s) 306, 309
TspRI CASTG 4 cut(s) 22, 271, 332, 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.