Rroxscaffold_4G00303940

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001155
Physical Location & Seq
Forward (+)
24450634 .. 24451103
470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00303940.1

Sequence Viewer

Length: 369 bp
ATGGCAATCAGCACTCCTCTTGTTGCGATAGCCTTTTTTGTTGTTTTTCCGAGCATGGTTTTGGCAAAACAGTATGTTGTTGGAGATGATGAAGGCTGGGATGGTAATGTTGATTACCAAGCTTGGGCAGATGACAAAACTTTCAGACTTGGAGATGTTTTAATATTCAAATACGATGCTGGTAGCCATAACGTTGCTCAAGCGTTTAATGCTGATGGCTATGACAGTTGTACTTCATCACCAGAATTGGGTGTGTACACCAGTGGCAATGACGCTTTAACTTTCAATCTTGTTGGGAGCTATTATTTCTTATGTGACTATCATTGTGACTCTGATCAACACAAAGTTATGATCAATATTGTTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

122

Amino Acids

13.46

Weight (kDa)

4.12

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 112 4.2e-20 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 192
AfaI GTAC 2 cut(s) 232, 257
AfiI CCNNNNNNNGG 2 cut(s) 124, 248
AgsI TTSAA 2 cut(s) 169, 286
AluBI AGCT 2 cut(s) 122, 300
AluI AGCT 2 cut(s) 122, 300
AsuHPI GGTGA 1 cut(s) 231
BccI CCATC 2 cut(s) 95, 209
BclI TGATCA 2 cut(s) 334, 351
BmsI GCATC 1 cut(s) 166
BpuEI CTTGAG 1 cut(s) 183
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 248
Bse1I ACTGG 1 cut(s) 261
Bse3DI GCAATG 1 cut(s) 274
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 2 cut(s) 124, 248
BseMI GCAATG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 261
BseRI GAGGAG 1 cut(s) 6
BseYI CCCAGC 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 124, 248
Bsp1407I TGTACA 1 cut(s) 255
Bsp143I GATC 2 cut(s) 334, 351
BsrDI GCAATG 1 cut(s) 274
BsrGI TGTACA 1 cut(s) 255
BsrI ACTGG 1 cut(s) 261
BssMI GATC 2 cut(s) 334, 351
Bst4CI ACNGT 2 cut(s) 72, 227
BstAUI TGTACA 1 cut(s) 255
BstF5I GGATG 1 cut(s) 106
BstKTI GATC 2 cut(s) 337, 354
BstMBI GATC 2 cut(s) 334, 351
BstMWI GCNNNNNNNGC 1 cut(s) 209
BtsCI GGATG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 268
CseI GACGC 1 cut(s) 281
Csp6I GTAC 2 cut(s) 231, 256
CviAII CATG 1 cut(s) 55
CviJI RGCY 6 cut(s) 32, 96, 122, 186, 219, 300
CviKI_1 RGCY 6 cut(s) 32, 96, 122, 186, 219, 300
CviQI GTAC 2 cut(s) 231, 256
DpnI GATC 2 cut(s) 336, 353
DpnII GATC 2 cut(s) 334, 351
FaeI CATG 1 cut(s) 58
FaiI YATR 7 cut(s) 56, 75, 189, 222, 313, 350, 367
FatI CATG 1 cut(s) 54
FbaI TGATCA 2 cut(s) 334, 351
FokI GGATG 1 cut(s) 113
GsaI CCCAGC 1 cut(s) 100
HgaI GACGC 1 cut(s) 281
Hin1II CATG 1 cut(s) 58
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 1 cut(s) 329
HphI GGTGA 1 cut(s) 231
Hpy166II GTNNAC 2 cut(s) 256, 258
Hpy188I TCNGA 3 cut(s) 51, 146, 334
Hpy8I GTNNAC 2 cut(s) 256, 258
HpyAV CCTTC 1 cut(s) 86
HpyCH4III ACNGT 2 cut(s) 72, 227
HpyCH4IV ACGT 1 cut(s) 192
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 1 cut(s) 58
Ksp22I TGATCA 2 cut(s) 334, 351
Kzo9I GATC 2 cut(s) 334, 351
LmnI GCTCC 1 cut(s) 297
LpnPI CCDG 4 cut(s) 82, 165, 255, 274
LweI GCATC 1 cut(s) 166
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 3 cut(s) 314, 326, 361
MalI GATC 2 cut(s) 336, 353
MboI GATC 2 cut(s) 334, 351
MluCI AATT 1 cut(s) 245
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 1 cut(s) 27
MseI TTAA 3 cut(s) 161, 207, 278
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeII GATC 2 cut(s) 334, 351
NlaIII CATG 1 cut(s) 58
NmuCI GTSAC 2 cut(s) 314, 326
PleI GAGTC 1 cut(s) 323
PpsI GAGTC 1 cut(s) 323
Psp1406I AACGTT 1 cut(s) 192
PspFI CCCAGC 1 cut(s) 96
RsaI GTAC 2 cut(s) 232, 257
RsaNI GTAC 2 cut(s) 231, 256
SaqAI TTAA 3 cut(s) 161, 207, 278
Sau3AI GATC 2 cut(s) 334, 351
SchI GAGTC 1 cut(s) 323
SetI ASST 3 cut(s) 124, 195, 302
SfaNI GCATC 1 cut(s) 166
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
Sse9I AATT 1 cut(s) 245
SspI AATATT 2 cut(s) 165, 358
TaaI ACNGT 2 cut(s) 72, 227
TaiI ACGT 1 cut(s) 195
TasI AATT 1 cut(s) 245
TatI WGTACW 2 cut(s) 230, 255
Tru1I TTAA 3 cut(s) 161, 207, 278
Tru9I TTAA 3 cut(s) 161, 207, 278
TscAI CASTG 1 cut(s) 268
TseFI GTSAC 2 cut(s) 314, 326
Tsp45I GTSAC 2 cut(s) 314, 326
TspDTI ATGAA 2 cut(s) 105, 225
TspRI CASTG 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.