Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001155

Physical Location & Seq

Genomic Coordinates Reverse (-)

31954274 .. 31955395

Gene Structure 1122 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG202000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCGCGGATCACTGCTGCACTTGCTGTGATTGCCTTGTTTGCTGTATTTCCGAGCATGGAGGCAACGCAGTATATTGTTGGTGATGACCGGGGTTGGAGTTCTAATGTTGATTACTACTCTTGGATTGCTGGCAAAACTTTTCATGTTGGAGATTCTTTAGTTTTCAATTATCCAACTATGATGCGTCACAACGTGCTTGTAGCAGCTAATTCTGATGTGTATGATAATTGTGATGCTGCTCCAAACTATGGGATCAGGACAAGTGGCAGCGATGTCTTTACCTTGCCCACCACGGGTACCTATTATTTCACATGTGAATATGATTGCGACTTAGGGCAGAAGATTAAGGTAGAAGTGAATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

122

Amino Acids

13.49

Weight (kDa)

4.51

Isoelectric Point (pI)

22.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	33 - 110	1.2e-15	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001155)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12420 FvH4_7g12430 FvH4_7g12440
malus_domestica	MD02G1199200.v1.1
prunus_persica	Prupe.2G149200_v2.0.a1
pyrus_communis	pycom02g16320 pycom02g16340
rosa_chinensis	RchiOBHm_Chr1g0351161 RchiOBHm_Chr1g0351231 RchiOBHm_Chr1g0351241 RchiOBHm_Chr1g0351251 RchiOBHm_Chr1g0351261 RchiOBHm_Chr1g0351271 RchiOBHm_Chr1g0351311 RchiOBHm_Chr1g0352011 RchiOBHm_Chr1g0352031 RchiOBHm_Chr1g0352041
rosa_laevigata	RLG00000001967 RLG00000028366
rosa_multiflora	Rmu_sc0002464.1_g000001 Rmu_sc0003271.1_g000014 Rmu_sc0003700.1_g000010 Rmu_sc0009891.1_g000010
rosa_roxburghii	Rroxscaffold_4G00303340 Rroxscaffold_4G00303890 Rroxscaffold_4G00303920 Rroxscaffold_4G00303940 Rroxscaffold_4G00303950
rosa_rugosa	Rorug01G0217100 Rorug01G0217200 Rorug01G0217300 Rorug01G0223600
rosa_samantha	Rh1BG201800 Rh1BG201900 Rh1BG202000 Rh1BG202300 Rh1BG207900 Rh1BG208300 Rh1CG215300 Rh1CG215800 Rh1CG215900 Rh1CG216200 Rh1CG216400 Rh1CG216500 Rh1CG216700 Rh1CG222000 Rh1CG222500 Rh1DG229100 Rh1DG229200 Rh1DG229300 Rh1DG229500 Rh1DG234900
rosa_wichuraiana	Rw1G020120 Rw1G020140 Rw1G020160 Rw1G020200 Rw1G020660 Rw1G020670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	299
AccB1I	GGYRCC	1 cut(s)	299
AccB7I	CCANNNNNTGG	1 cut(s)	251
AccII	CGCG	1 cut(s)	7
AciI	CCGC	1 cut(s)	7
AclWI	GGATC	2 cut(s)	17, 263
AdeI	CACNNNGTG	1 cut(s)	196
AfaI	GTAC	1 cut(s)	301
AfiI	CCNNNNNNNGG	2 cut(s)	251, 296
AflIII	ACRYGT	1 cut(s)	314
AgsI	TTSAA	1 cut(s)	169
AluBI	AGCT	1 cut(s)	209
AluI	AGCT	1 cut(s)	209
AlwI	GGATC	2 cut(s)	17, 263
ApeKI	GCWGC	4 cut(s)	17, 206, 239, 270
Asp718I	GGTACC	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	299
BbvI	GCAGC	4 cut(s)	4, 218, 226, 282
BcnI	CCSGG	1 cut(s)	92
BisI	GCNGC	4 cut(s)	18, 207, 240, 271
BlsI	GCNGC	4 cut(s)	19, 208, 241, 272
Bme1390I	CCNGG	1 cut(s)	92
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	2 cut(s)	174, 226
BpuMI	CCSGG	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	91, 294
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 296
BseDI	CCNNGG	2 cut(s)	91, 294
BseLI	CCNNNNNNNGG	2 cut(s)	251, 296
BseXI	GCAGC	4 cut(s)	4, 218, 226, 282
Bsh1236I	CGCG	1 cut(s)	7
BshNI	GGYRCC	1 cut(s)	299
BsiSI	CCGG	1 cut(s)	91
BslI	CCNNNNNNNGG	2 cut(s)	251, 296
Bsp143I	GATC	2 cut(s)	9, 255
BspACI	CCGC	1 cut(s)	7
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	301
BspPI	GGATC	2 cut(s)	17, 263
BspT107I	GGYRCC	1 cut(s)	299
BssECI	CCNNGG	2 cut(s)	91, 294
BssMI	GATC	2 cut(s)	9, 255
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	334
BstDSI	CCRYGG	1 cut(s)	294
BstFNI	CGCG	1 cut(s)	7
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	12, 258
BstMBI	GATC	2 cut(s)	9, 255
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 32, 41
BstNSI	RCATGY	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	90
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	4 cut(s)	4, 218, 226, 282
BtgI	CCRYGG	1 cut(s)	294
BtgZI	GCGATG	1 cut(s)	288
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	133
CfoI	GCGC	1 cut(s)	7
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	300
CviAII	CATG	3 cut(s)	58, 146, 315
CviJI	RGCY	1 cut(s)	209
CviKI_1	RGCY	1 cut(s)	209
CviQI	GTAC	1 cut(s)	300
DdeI	CTNAG	1 cut(s)	334
DpnI	GATC	2 cut(s)	11, 257
DpnII	GATC	2 cut(s)	9, 255
DraIII	CACNNNGTG	1 cut(s)	196
FaeI	CATG	3 cut(s)	61, 149, 318
FaiI	YATR	8 cut(s)	59, 75, 147, 182, 225, 252, 316, 324
FatI	CATG	3 cut(s)	57, 145, 314
Fnu4HI	GCNGC	4 cut(s)	18, 207, 240, 271
Fsp4HI	GCNGC	4 cut(s)	18, 207, 240, 271
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	18, 207, 240, 271
HapII	CCGG	1 cut(s)	91
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	3 cut(s)	61, 149, 318
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	1 cut(s)	91
HphI	GGTGA	1 cut(s)	95
Hpy188I	TCNGA	2 cut(s)	54, 217
Hpy188III	TCNNGA	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 32, 41
HpyF3I	CTNAG	1 cut(s)	334
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	61, 149, 318
HspAI	GCGC	1 cut(s)	5
KpnI	GGTACC	1 cut(s)	303
Kzo9I	GATC	2 cut(s)	9, 255
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	3 cut(s)	104, 117, 244
Lsp1109I	GCAGC	4 cut(s)	4, 218, 226, 282
LweI	GCATC	2 cut(s)	174, 226
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	2 cut(s)	11, 257
MboI	GATC	2 cut(s)	9, 255
MboII	GAAGA	1 cut(s)	355
MluCI	AATT	3 cut(s)	169, 211, 229
MmeI	TCCRAC	3 cut(s)	77, 130, 200
MnlI	CCTC	1 cut(s)	55
MseI	TTAA	1 cut(s)	348
MspI	CCGG	1 cut(s)	91
MspR9I	CCNGG	1 cut(s)	92
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	3 cut(s)	23, 32, 41
NciI	CCSGG	1 cut(s)	92
NdeII	GATC	2 cut(s)	9, 255
NlaIII	CATG	3 cut(s)	61, 149, 318
NlaIV	GGNNCC	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	188
NspI	RCATGY	1 cut(s)	318
PciI	ACATGT	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	155
PflMI	CCANNNNNTGG	1 cut(s)	251
PkrI	GCNGC	4 cut(s)	19, 208, 241, 272
PscI	ACATGT	1 cut(s)	314
PspN4I	GGNNCC	1 cut(s)	301
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	4 cut(s)	18, 207, 240, 271
Sau3AI	GATC	2 cut(s)	9, 255
ScrFI	CCNGG	1 cut(s)	92
SetI	ASST	5 cut(s)	198, 211, 287, 305, 354
SfaNI	GCATC	2 cut(s)	174, 226
Sse9I	AATT	3 cut(s)	169, 211, 229
SsiI	CCGC	1 cut(s)	7
StyD4I	CCNGG	1 cut(s)	90
TaiI	ACGT	1 cut(s)	198
TasI	AATT	3 cut(s)	169, 211, 229
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	4 cut(s)	17, 206, 239, 270
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	134
TspRI	CASTG	1 cut(s)	19
Van91I	CCANNNNNTGG	1 cut(s)	251
XceI	RCATGY	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.