Rw1G020140

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001155
Physical Location & Seq
Reverse (-)
43637769 .. 43638876
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G020140.1

Sequence Viewer

Length: 369 bp
ATGGCGCGAATCACTGCAGCTCTTGCTGTGATTGCCTTGTTTGCTGTATTTCCGAGCATGGAGGCAACGCAGTATGTTGTTGGTGATGACCAGGGTTGGAATTCTGATGTTGATTACTACTCTTGGATTGCTGGCAAAACTTTTCATGTTGGAGATTCTTTAGTTTTCAGTTATACACCGGGCGATCACAATGTAGTTGTAGCAGCTAATTCTGATGTGTATGATAAGTGTGCTACTACTCCAAACTTGGGGGTCTGGACAAGTGGCAGTGACGTCTTAACCTTGCCCAGCACGGGTACCTATTATTTCTTGTGTGAATTTCATTGCGACTTCAGTGAGCAGAGGATTAAAGTAGAAGTGAACAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

122

Amino Acids

13.38

Weight (kDa)

4.3

Isoelectric Point (pI)

21.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 109 7.5e-19 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 276
Acc65I GGTACC 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 296
AccII CGCG 1 cut(s) 7
AcsI RAATTY 2 cut(s) 100, 317
AcuI CTGAAG 1 cut(s) 316
AcyI GRCGYC 1 cut(s) 273
AfaI GTAC 1 cut(s) 298
AfiI CCNNNNNNNGG 2 cut(s) 248, 293
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 3 cut(s) 20, 206, 366
AluI AGCT 3 cut(s) 20, 206, 366
ApeKI GCWGC 2 cut(s) 17, 203
ApoI RAATTY 2 cut(s) 100, 317
Asp718I GGTACC 1 cut(s) 296
AspLEI GCGC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 95
BanI GGYRCC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 29, 215
BciT130I CCWGG 1 cut(s) 92
BcnI CCSGG 1 cut(s) 180
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 2 cut(s) 18, 204
BlsI GCNGC 2 cut(s) 19, 205
Bme1390I CCNGG 2 cut(s) 92, 180
BmiI GGNNCC 1 cut(s) 298
BmrFI CCNGG 2 cut(s) 92, 180
BpuMI CCSGG 1 cut(s) 180
BsaHI GRCGYC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 91
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 293
Bse3DI GCAATG 1 cut(s) 322
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 91
BseLI CCNNNNNNNGG 2 cut(s) 248, 293
BseMI GCAATG 1 cut(s) 322
BseXI GCAGC 2 cut(s) 29, 215
BseYI CCCAGC 1 cut(s) 287
Bsh1236I CGCG 1 cut(s) 7
BshNI GGYRCC 1 cut(s) 296
BsiSI CCGG 1 cut(s) 179
BslI CCNNNNNNNGG 2 cut(s) 248, 293
Bsp143I GATC 1 cut(s) 184
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 298
BspMAI CTGCAG 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 1 cut(s) 184
BssNI GRCGYC 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 92
BstACI GRCGYC 1 cut(s) 273
BstAPI GCANNNNNTGC 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 133
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 41
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 2 cut(s) 90, 178
BstSFI CTRYAG 1 cut(s) 15
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 2 cut(s) 29, 215
BtsI GCAGTG 2 cut(s) 12, 274
BtsIMutI CAGTG 3 cut(s) 12, 274, 340
Cac8I GCNNGC 1 cut(s) 133
CfoI GCGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 297
CviAII CATG 2 cut(s) 58, 146
CviJI RGCY 3 cut(s) 20, 206, 366
CviKI_1 RGCY 3 cut(s) 20, 206, 366
CviQI GTAC 1 cut(s) 297
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 316
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 90
FaeI CATG 2 cut(s) 61, 149
FaiI YATR 5 cut(s) 59, 75, 147, 174, 222
FatI CATG 2 cut(s) 57, 145
Fnu4HI GCNGC 2 cut(s) 18, 204
Fsp4HI GCNGC 2 cut(s) 18, 204
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 18, 204
GsaI CCCAGC 1 cut(s) 291
HapII CCGG 1 cut(s) 179
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 273
Hin1II CATG 2 cut(s) 61, 149
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 2 cut(s) 9, 155
HpaII CCGG 1 cut(s) 179
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 3 cut(s) 54, 106, 214
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 1 cut(s) 361
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 41
HpySE526I ACGT 1 cut(s) 273
Hsp92I GRCGYC 1 cut(s) 273
Hsp92II CATG 2 cut(s) 61, 149
HspAI GCGC 1 cut(s) 5
KpnI GGTACC 1 cut(s) 300
Kzo9I GATC 1 cut(s) 184
LpnPI CCDG 6 cut(s) 77, 104, 117, 192, 241, 301
Lsp1109I GCAGC 2 cut(s) 29, 215
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 1 cut(s) 269
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MluCI AATT 3 cut(s) 100, 208, 317
MmeI TCCRAC 2 cut(s) 77, 130
MnlI CCTC 2 cut(s) 55, 336
MseI TTAA 2 cut(s) 278, 348
MspA1I CMGCKG 1 cut(s) 366
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 2 cut(s) 92, 180
MvaI CCWGG 1 cut(s) 92
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 41
NciI CCSGG 1 cut(s) 180
NdeII GATC 1 cut(s) 184
NlaIII CATG 2 cut(s) 61, 149
NlaIV GGNNCC 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 269
PfeI GAWTC 2 cut(s) 9, 155
PkrI GCNGC 2 cut(s) 19, 205
Psp6I CCWGG 1 cut(s) 90
PspFI CCCAGC 1 cut(s) 287
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 298
PstI CTGCAG 1 cut(s) 19
PvuII CAGCTG 1 cut(s) 366
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
SaqAI TTAA 2 cut(s) 278, 348
SatI GCNGC 2 cut(s) 18, 204
Sau3AI GATC 1 cut(s) 184
ScrFI CCNGG 2 cut(s) 92, 180
SetI ASST 6 cut(s) 22, 208, 276, 284, 302, 368
SfcI CTRYAG 1 cut(s) 15
Sse9I AATT 3 cut(s) 100, 208, 317
StyD4I CCNGG 2 cut(s) 90, 178
TaiI ACGT 1 cut(s) 276
TasI AATT 3 cut(s) 100, 208, 317
TfiI GAWTC 2 cut(s) 9, 155
Tru1I TTAA 2 cut(s) 278, 348
Tru9I TTAA 2 cut(s) 278, 348
TscAI CASTG 3 cut(s) 19, 274, 340
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 2 cut(s) 17, 203
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 2 cut(s) 134, 311
TspRI CASTG 3 cut(s) 19, 274, 340
XapI RAATTY 2 cut(s) 100, 317
ZraI GACGTC 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.