Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001155

Physical Location & Seq

Genomic Coordinates Reverse (-)

20474227 .. 20475941

Gene Structure 1715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G149200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCACGAGCCATCGATCTTCTTGCGATTGCGCTTATCGTTTTTCCTAGCATGGTTTTGGCAACAGAGTATGTTGTTGGAGATGATGAAGGCTGGAATTCTGGAGTCGATTACTATGCTTGGCTTGATGGCAAAACCTTCTATGTGGGAGATGTGTTAGTTTTCAATTACAATGCAGGTGACCACAATGTGATTGTAGTTGATGCTGACGGGTATGATAAATGCAGTGCATCTCCAAACTGGGGTTCTTATGACAGCGGCAACGACGTGATAACGTTGAGCTCTCCCAGGGACAACTATTACATATGTCAATGGCACTGTGATTACACTGACCAGAAGCTTAAGGTCAGTGTCTTACAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

122

Amino Acids

13.51

Weight (kDa)

4.06

Isoelectric Point (pI)

34.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001155)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12420 FvH4_7g12430 FvH4_7g12440
malus_domestica	MD02G1199200.v1.1
prunus_persica	Prupe.2G149200_v2.0.a1
pyrus_communis	pycom02g16320 pycom02g16340
rosa_chinensis	RchiOBHm_Chr1g0351161 RchiOBHm_Chr1g0351231 RchiOBHm_Chr1g0351241 RchiOBHm_Chr1g0351251 RchiOBHm_Chr1g0351261 RchiOBHm_Chr1g0351271 RchiOBHm_Chr1g0351311 RchiOBHm_Chr1g0352011 RchiOBHm_Chr1g0352031 RchiOBHm_Chr1g0352041
rosa_laevigata	RLG00000001967 RLG00000028366
rosa_multiflora	Rmu_sc0002464.1_g000001 Rmu_sc0003271.1_g000014 Rmu_sc0003700.1_g000010 Rmu_sc0009891.1_g000010
rosa_roxburghii	Rroxscaffold_4G00303340 Rroxscaffold_4G00303890 Rroxscaffold_4G00303920 Rroxscaffold_4G00303940 Rroxscaffold_4G00303950
rosa_rugosa	Rorug01G0217100 Rorug01G0217200 Rorug01G0217300 Rorug01G0223600
rosa_samantha	Rh1BG201800 Rh1BG201900 Rh1BG202000 Rh1BG202300 Rh1BG207900 Rh1BG208300 Rh1CG215300 Rh1CG215800 Rh1CG215900 Rh1CG216200 Rh1CG216400 Rh1CG216500 Rh1CG216700 Rh1CG222000 Rh1CG222500 Rh1DG229100 Rh1DG229200 Rh1DG229300 Rh1DG229500 Rh1DG234900
rosa_wichuraiana	Rw1G020120 Rw1G020140 Rw1G020160 Rw1G020200 Rw1G020660 Rw1G020670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	167
Acc36I	ACCTGC	1 cut(s)	167
AciI	CCGC	1 cut(s)	258
AclI	AACGTT	1 cut(s)	275
AcsI	RAATTY	1 cut(s)	97
AdeI	CACNNNGTG	1 cut(s)	190
AfiI	CCNNNNNNNGG	1 cut(s)	242
AflII	CTTAAG	1 cut(s)	341
AgsI	TTSAA	1 cut(s)	166
AjiI	CACGTC	1 cut(s)	268
AjnI	CCWGG	1 cut(s)	287
AjuI	GAANNNNNNNTTGG	2 cut(s)	229, 261
AluBI	AGCT	2 cut(s)	282, 340
AluI	AGCT	2 cut(s)	282, 340
Alw21I	GWGCWC	1 cut(s)	284
ApoI	RAATTY	1 cut(s)	97
AspLEI	GCGC	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	284
BauI	CACGAG	1 cut(s)	6
Bbv12I	GWGCWC	1 cut(s)	284
BccI	CCATC	2 cut(s)	20, 122
BcgI	CGANNNNNNTGC	4 cut(s)	5, 39, 98, 132
BciT130I	CCWGG	1 cut(s)	289
BfaI	CTAG	2 cut(s)	48, 364
BfrI	CTTAAG	1 cut(s)	341
BfuAI	ACCTGC	1 cut(s)	167
BisI	GCNGC	1 cut(s)	259
BlsI	GCNGC	1 cut(s)	260
Bme1390I	CCNGG	1 cut(s)	289
BmgBI	CACGTC	1 cut(s)	268
BmrFI	CCNGG	1 cut(s)	289
BmrI	ACTGGG	1 cut(s)	250
BmsI	GCATC	2 cut(s)	193, 239
BmuI	ACTGGG	1 cut(s)	250
BpmI	CTGGAG	1 cut(s)	123
Bsa29I	ATCGAT	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	287, 288
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	289
BseCI	ATCGAT	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	287, 288
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	245
BshVI	ATCGAT	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	284
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	1 cut(s)	16
BspACI	CCGC	1 cut(s)	258
BspDI	ATCGAT	1 cut(s)	15
BspMI	ACCTGC	1 cut(s)	167
BspTI	CTTAAG	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	2 cut(s)	287, 288
BssMI	GATC	1 cut(s)	16
BssSI	CACGAG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	1 cut(s)	320
BstAFI	CTTAAG	1 cut(s)	341
BstEII	GGTNACC	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	16
BstNI	CCWGG	1 cut(s)	289
BstPI	GGTNACC	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	287
Bsu15I	ATCGAT	1 cut(s)	15
BsuTUI	ATCGAT	1 cut(s)	15
BtrI	CACGTC	1 cut(s)	268
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	4 cut(s)	232, 316, 327, 355
BveI	ACCTGC	1 cut(s)	167
CfoI	GCGC	1 cut(s)	34
ClaI	ATCGAT	1 cut(s)	15
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	5 cut(s)	11, 93, 124, 282, 340
CviKI_1	RGCY	5 cut(s)	11, 93, 124, 282, 340
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
DraIII	CACNNNGTG	1 cut(s)	190
Ecl136II	GAGCTC	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	284
Eco53kI	GAGCTC	1 cut(s)	282
Eco91I	GGTNACC	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	282
EcoO65I	GGTNACC	1 cut(s)	179
EcoRI	GAATTC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	287
EcoT38I	GRGCYC	1 cut(s)	284
FaeI	CATG	1 cut(s)	55
FaiI	YATR	8 cut(s)	53, 72, 117, 144, 216, 252, 305, 307
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	1 cut(s)	51
FauNDI	CATATG	1 cut(s)	305
Fnu4HI	GCNGC	1 cut(s)	259
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	1 cut(s)	259
FspBI	CTAG	2 cut(s)	48, 364
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	259
GsuI	CTGGAG	1 cut(s)	123
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	55
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	1 cut(s)	105
HphI	GGTGA	1 cut(s)	191
Hpy188III	TCNNGA	1 cut(s)	102
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	2 cut(s)	83, 148
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	2 cut(s)	267, 275
HpyCH4V	TGCA	3 cut(s)	176, 225, 230
HpySE526I	ACGT	2 cut(s)	267, 275
Hsp92II	CATG	1 cut(s)	55
HspAI	GCGC	1 cut(s)	32
Kzo9I	GATC	1 cut(s)	16
LpnPI	CCDG	7 cut(s)	79, 87, 162, 226, 274, 301, 347
LweI	GCATC	2 cut(s)	193, 239
MaeI	CTAG	2 cut(s)	48, 364
MaeII	ACGT	2 cut(s)	267, 275
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	1 cut(s)	11
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	2 cut(s)	97, 166
MlyI	GAGTC	1 cut(s)	114
MmeI	TCCRAC	1 cut(s)	58
MseI	TTAA	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	258
MspCI	CTTAAG	1 cut(s)	341
MspR9I	CCNGG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	289
NdeI	CATATG	1 cut(s)	305
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	1 cut(s)	55
NmuCI	GTSAC	1 cut(s)	179
PaqCI	CACCTGC	1 cut(s)	167
PasI	CCCWGGG	1 cut(s)	288
PkrI	GCNGC	1 cut(s)	260
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Psp124BI	GAGCTC	1 cut(s)	284
Psp1406I	AACGTT	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	287
PspEI	GGTNACC	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	287
SacI	GAGCTC	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	1 cut(s)	259
Sau3AI	GATC	1 cut(s)	16
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	7 cut(s)	140, 181, 270, 278, 284, 342, 348
SfaNI	GCATC	2 cut(s)	193, 239
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	97, 166
SsiI	CCGC	1 cut(s)	258
SspMI	CTAG	2 cut(s)	48, 364
SstI	GAGCTC	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	287
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	2 cut(s)	270, 278
TaqI	TCGA	2 cut(s)	15, 108
TasI	AATT	2 cut(s)	97, 166
TauI	GCSGC	1 cut(s)	261
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	4 cut(s)	232, 323, 334, 355
TseFI	GTSAC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	1 cut(s)	102
TspRI	CASTG	4 cut(s)	232, 323, 334, 355
Vha464I	CTTAAG	1 cut(s)	341
XapI	RAATTY	1 cut(s)	97
XspI	CTAG	2 cut(s)	48, 364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.