RchiOBHm_Chr1g0351161

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001155
Physical Location & Seq
Reverse (-)
44415140 .. 44416318
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57695

Sequence Viewer

Length: 279 bp
ATGGCGCGAATCACTGCTGCTCTTGCTATGATTGCCTTGTTTGCTGGCTGGAGTTATAATGTTGATTACTACTCTTGGATTGTTGGCAAAACTTTTCATGTTGGAGATTCTTTAGCAAATTCTGATGTGTATGATAAGTGTGCTACTACTCCAAACTTGGGAGTCTGGACAAGTGGCAGTGACGTCTTTACCTTGCCCACCACAGGTACCTATTATTTCTTGTGTGAATTTCATTGCGACTACAGCGAGCAGAGGATTAAGGTAGAAGTGAACAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

92

Amino Acids

10.3

Weight (kDa)

4.73

Isoelectric Point (pI)

17.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 57
AatII GACGTC 1 cut(s) 186
Acc65I GGTACC 1 cut(s) 206
AccB1I GGYRCC 1 cut(s) 206
AccII CGCG 1 cut(s) 7
AcsI RAATTY 2 cut(s) 118, 227
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 1 cut(s) 208
AfiI CCNNNNNNNGG 2 cut(s) 158, 203
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 2 cut(s) 118, 227
Asp718I GGTACC 1 cut(s) 206
AspLEI GCGC 1 cut(s) 7
BanI GGYRCC 1 cut(s) 206
BbvI GCAGC 1 cut(s) 4
BfmI CTRYAG 1 cut(s) 241
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 183
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 203
Bse3DI GCAATG 1 cut(s) 232
BseLI CCNNNNNNNGG 2 cut(s) 158, 203
BseMI GCAATG 1 cut(s) 232
BseXI GCAGC 1 cut(s) 4
Bsh1236I CGCG 1 cut(s) 7
BshNI GGYRCC 1 cut(s) 206
BslI CCNNNNNNNGG 2 cut(s) 158, 203
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 208
BspT107I GGYRCC 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 232
BssNI GRCGYC 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 275
BstACI GRCGYC 1 cut(s) 183
BstC8I GCNNGC 2 cut(s) 46, 248
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 1 cut(s) 7
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 41, 243
BstSFI CTRYAG 1 cut(s) 241
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 4
BtsI GCAGTG 2 cut(s) 12, 184
BtsIMutI CAGTG 2 cut(s) 12, 184
Cac8I GCNNGC 2 cut(s) 46, 248
CfoI GCGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 207
CviAII CATG 1 cut(s) 98
CviJI RGCY 1 cut(s) 48
CviKI_1 RGCY 1 cut(s) 48
CviQI GTAC 1 cut(s) 207
FaeI CATG 1 cut(s) 101
FaiI YATR 4 cut(s) 29, 57, 99, 132
FatI CATG 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 18
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 18
GsuI CTGGAG 1 cut(s) 70
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 1 cut(s) 101
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 3 cut(s) 9, 107, 162
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 1 cut(s) 166
Hpy8I GTNNAC 1 cut(s) 271
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4IV ACGT 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 41, 243
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 1 cut(s) 101
HspAI GCGC 1 cut(s) 5
KpnI GGTACC 1 cut(s) 210
LpnPI CCDG 4 cut(s) 30, 34, 151, 189
Lsp1109I GCAGC 1 cut(s) 4
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 179
MluCI AATT 2 cut(s) 118, 227
MlyI GAGTC 1 cut(s) 171
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 1 cut(s) 246
MseI TTAA 1 cut(s) 258
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 41, 243
NlaIII CATG 1 cut(s) 101
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 179
PfeI GAWTC 2 cut(s) 9, 107
PkrI GCNGC 1 cut(s) 19
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
PsiI TTATAA 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 208
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 1 cut(s) 18
SchI GAGTC 1 cut(s) 171
SetI ASST 5 cut(s) 186, 194, 208, 212, 264
SfcI CTRYAG 1 cut(s) 241
Sse9I AATT 2 cut(s) 118, 227
TaaI ACNGT 1 cut(s) 275
TaiI ACGT 1 cut(s) 186
TasI AATT 2 cut(s) 118, 227
TfiI GAWTC 2 cut(s) 9, 107
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 2 cut(s) 19, 184
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 86, 221
TspRI CASTG 2 cut(s) 19, 184
XapI RAATTY 2 cut(s) 118, 227
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.