FvH4_7g12440

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001155
Physical Location & Seq
Reverse (-)
11292109 .. 11292809
701 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12440.t1

Sequence Viewer

Length: 369 bp
ATGGCAAGAATCACTGCTGCTCTTGCTGTGATTGCCTTGTTTGCTGTATTTCCGAGCATGGATGCAACGCAGTATATTGTTGGTGATGACCAGGGTTGGAATTCTGGTGTTGATTACTATTCTTGGATGGATGGCAAAACGTTTCATGTCGGAGATTCTTTAGTTTTCAATTATGTACCTGGGGATCACAATGTGATTGTAGCAGCTAATTATGATGTGTATGACAAGTGTGCTACTACTCCAAACTTGGGAATCTGGACAAGTGGCAATGACGTTCTAACCTTGCCCACCACAGGCACCTATTATTTCTTGTGTGAATTTCACTGCGACTACACCGAGCAGAGGATTATGGTAGAGGTGAACAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

123

Amino Acids

13.59

Weight (kDa)

4.15

Isoelectric Point (pI)

24.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 108 4.2e-18 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 296
AclI AACGTT 1 cut(s) 140
AclWI GGATC 1 cut(s) 192
AcsI RAATTY 2 cut(s) 100, 317
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 1 cut(s) 177
AfiI CCNNNNNNNGG 3 cut(s) 248, 293, 342
AgsI TTSAA 1 cut(s) 169
AjnI CCWGG 2 cut(s) 90, 178
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
AlwI GGATC 1 cut(s) 192
ApeKI GCWGC 2 cut(s) 17, 203
ApoI RAATTY 2 cut(s) 100, 317
AsuHPI GGTGA 1 cut(s) 95
BanI GGYRCC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 4, 215
BccI CCATC 2 cut(s) 121, 125
BciT130I CCWGG 2 cut(s) 92, 180
BisI GCNGC 2 cut(s) 18, 204
BlsI GCNGC 2 cut(s) 19, 205
Bme1390I CCNGG 2 cut(s) 92, 180
BmiI GGNNCC 1 cut(s) 298
BmrFI CCNGG 2 cut(s) 92, 180
BmsI GCATC 1 cut(s) 52
BsaJI CCNNGG 2 cut(s) 91, 179
Bsc4I CCNNNNNNNGG 3 cut(s) 248, 293, 342
Bse3DI GCAATG 1 cut(s) 274
BseBI CCWGG 2 cut(s) 92, 180
BseDI CCNNGG 2 cut(s) 91, 179
BseGI GGATG 3 cut(s) 67, 132, 136
BseLI CCNNNNNNNGG 3 cut(s) 248, 293, 342
BseMI GCAATG 1 cut(s) 274
BseXI GCAGC 2 cut(s) 4, 215
BshNI GGYRCC 1 cut(s) 296
BslI CCNNNNNNNGG 3 cut(s) 248, 293, 342
Bsp143I GATC 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 298
BspPI GGATC 1 cut(s) 192
BspT107I GGYRCC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 274
BssECI CCNNGG 2 cut(s) 91, 179
BssMI GATC 1 cut(s) 184
Bst2UI CCWGG 2 cut(s) 92, 180
Bst4CI ACNGT 1 cut(s) 365
BstF5I GGATG 3 cut(s) 67, 132, 136
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 41
BstNI CCWGG 2 cut(s) 92, 180
BstSCI CCNGG 2 cut(s) 90, 178
BstV1I GCAGC 2 cut(s) 4, 215
BtsCI GGATG 3 cut(s) 67, 132, 136
BtsI GCAGTG 2 cut(s) 12, 322
BtsIMutI CAGTG 2 cut(s) 12, 322
Csp6I GTAC 1 cut(s) 176
CviAII CATG 2 cut(s) 58, 146
CviJI RGCY 1 cut(s) 206
CviKI_1 RGCY 1 cut(s) 206
CviQI GTAC 1 cut(s) 176
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
DraIII CACNNNGTG 1 cut(s) 193
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 2 cut(s) 90, 178
FaeI CATG 2 cut(s) 61, 149
FaiI YATR 7 cut(s) 59, 75, 147, 174, 213, 222, 350
FatI CATG 2 cut(s) 57, 145
Fnu4HI GCNGC 2 cut(s) 18, 204
FokI GGATG 3 cut(s) 74, 139, 143
Fsp4HI GCNGC 2 cut(s) 18, 204
GluI GCNGC 2 cut(s) 18, 204
Hin1II CATG 2 cut(s) 61, 149
HinfI GANTC 3 cut(s) 9, 155, 252
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 2 cut(s) 54, 152
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 1 cut(s) 361
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4IV ACGT 2 cut(s) 140, 273
HpyCH4V TGCA 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 41
HpySE526I ACGT 2 cut(s) 140, 273
Hsp92II CATG 2 cut(s) 61, 149
Kzo9I GATC 1 cut(s) 184
LpnPI CCDG 7 cut(s) 77, 90, 104, 165, 192, 241, 279
Lsp1109I GCAGC 2 cut(s) 4, 215
LweI GCATC 1 cut(s) 52
MaeII ACGT 2 cut(s) 140, 273
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MluCI AATT 4 cut(s) 100, 169, 208, 317
MmeI TCCRAC 2 cut(s) 77, 130
MnlI CCTC 2 cut(s) 336, 349
MspR9I CCNGG 2 cut(s) 92, 180
MvaI CCWGG 2 cut(s) 92, 180
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 41
NdeII GATC 1 cut(s) 184
NlaIII CATG 2 cut(s) 61, 149
NlaIV GGNNCC 1 cut(s) 298
PfeI GAWTC 3 cut(s) 9, 155, 252
PkrI GCNGC 2 cut(s) 19, 205
Psp1406I AACGTT 1 cut(s) 140
Psp6I CCWGG 2 cut(s) 90, 178
PspGI CCWGG 2 cut(s) 90, 178
PspN4I GGNNCC 1 cut(s) 298
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
SatI GCNGC 2 cut(s) 18, 204
Sau3AI GATC 1 cut(s) 184
ScrFI CCNGG 2 cut(s) 92, 180
SetI ASST 7 cut(s) 143, 181, 208, 276, 284, 302, 360
SfaNI GCATC 1 cut(s) 52
Sse9I AATT 4 cut(s) 100, 169, 208, 317
StyD4I CCNGG 2 cut(s) 90, 178
TaaI ACNGT 1 cut(s) 365
TaiI ACGT 2 cut(s) 143, 276
TasI AATT 4 cut(s) 100, 169, 208, 317
TfiI GAWTC 3 cut(s) 9, 155, 252
TscAI CASTG 2 cut(s) 19, 329
TseI GCWGC 2 cut(s) 17, 203
TspDTI ATGAA 1 cut(s) 134
TspRI CASTG 2 cut(s) 19, 329
XapI RAATTY 2 cut(s) 100, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.