Rw1G020160

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001155
Physical Location & Seq
Reverse (-)
43654169 .. 43668427
14259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G020160.1

Sequence Viewer

Length: 369 bp
ATGGCGCGAATCACTGCTGCTCTTGCTGTGATTGCCTTTTTTGCTGTATTTCCGAGCATGGAGGCAACGCAGTATATTGTTGGTGATGACCAAGGTTGGAGTTCTGATGTTGATTACTCCTCTTGGATTGCTGGCAAAACTTTTCATGTTGGAGATTCATTAGTTTTCAATTATCCAACAATGATGCGTCACAATGTGCTTGTAGCAGCTAATTTTGATGCGTATGATAATTGTGATGCTGCTCCAAACTATGGGATCTGGACAAGTGGCAGCGATGTCTTTACCTTGCCCACGACGGGTACCTATTATTTCACATGTGAATATGATTGCGACGTAGGGCAGAAGATTATGGTGGAAGTGAATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

122

Amino Acids

13.47

Weight (kDa)

4.05

Isoelectric Point (pI)

24.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 111 3e-16 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 299
AccB7I CCANNNNNTGG 1 cut(s) 251
AccII CGCG 1 cut(s) 7
AclWI GGATC 1 cut(s) 263
AdeI CACNNNGTG 1 cut(s) 196
AfaI GTAC 1 cut(s) 301
AfiI CCNNNNNNNGG 2 cut(s) 251, 296
AflIII ACRYGT 1 cut(s) 314
AgsI TTSAA 1 cut(s) 169
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
AlwI GGATC 1 cut(s) 263
ApeKI GCWGC 4 cut(s) 17, 206, 239, 270
Asp718I GGTACC 1 cut(s) 299
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 95
BanI GGYRCC 1 cut(s) 299
BbvI GCAGC 4 cut(s) 4, 218, 226, 282
BisI GCNGC 4 cut(s) 18, 207, 240, 271
BlsI GCNGC 4 cut(s) 19, 208, 241, 272
BmiI GGNNCC 1 cut(s) 301
BmsI GCATC 3 cut(s) 174, 208, 226
BsaJI CCNNGG 1 cut(s) 91
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 296
BseDI CCNNGG 1 cut(s) 91
BseLI CCNNNNNNNGG 2 cut(s) 251, 296
BseRI GAGGAG 1 cut(s) 109
BseXI GCAGC 4 cut(s) 4, 218, 226, 282
Bsh1236I CGCG 1 cut(s) 7
BshNI GGYRCC 1 cut(s) 299
BslI CCNNNNNNNGG 2 cut(s) 251, 296
Bsp143I GATC 1 cut(s) 255
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 301
BspPI GGATC 1 cut(s) 263
BspT107I GGYRCC 1 cut(s) 299
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 133
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 258
BstMBI GATC 1 cut(s) 255
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 41
BstNSI RCATGY 1 cut(s) 318
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 4 cut(s) 4, 218, 226, 282
BstX2I RGATCY 1 cut(s) 255
BstYI RGATCY 1 cut(s) 255
BtgZI GCGATG 1 cut(s) 288
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 133
CfoI GCGC 1 cut(s) 7
CseI GACGC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 300
CviAII CATG 3 cut(s) 58, 146, 315
CviJI RGCY 1 cut(s) 209
CviKI_1 RGCY 1 cut(s) 209
CviQI GTAC 1 cut(s) 300
DpnI GATC 1 cut(s) 257
DpnII GATC 1 cut(s) 255
DraIII CACNNNGTG 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 3 cut(s) 61, 149, 318
FaiI YATR 8 cut(s) 59, 75, 147, 225, 252, 316, 324, 350
FatI CATG 3 cut(s) 57, 145, 314
Fnu4HI GCNGC 4 cut(s) 18, 207, 240, 271
Fsp4HI GCNGC 4 cut(s) 18, 207, 240, 271
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 18, 207, 240, 271
HgaI GACGC 1 cut(s) 176
HhaI GCGC 1 cut(s) 7
Hin1II CATG 3 cut(s) 61, 149, 318
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 2 cut(s) 9, 155
HphI GGTGA 1 cut(s) 95
Hpy188I TCNGA 2 cut(s) 54, 106
Hpy188III TCNNGA 1 cut(s) 259
Hpy99I CGWCG 2 cut(s) 298, 335
HpyCH4IV ACGT 1 cut(s) 333
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 41
HpySE526I ACGT 1 cut(s) 333
Hsp92II CATG 3 cut(s) 61, 149, 318
HspAI GCGC 1 cut(s) 5
KpnI GGTACC 1 cut(s) 303
Kzo9I GATC 1 cut(s) 255
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 2 cut(s) 117, 244
Lsp1109I GCAGC 4 cut(s) 4, 218, 226, 282
LweI GCATC 3 cut(s) 174, 208, 226
MaeII ACGT 1 cut(s) 333
MaeIII GTNAC 1 cut(s) 188
MalI GATC 1 cut(s) 257
MboI GATC 1 cut(s) 255
MboII GAAGA 1 cut(s) 355
MflI RGATCY 1 cut(s) 255
MluCI AATT 3 cut(s) 169, 211, 229
MmeI TCCRAC 3 cut(s) 77, 130, 200
MnlI CCTC 2 cut(s) 55, 130
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 41
NdeII GATC 1 cut(s) 255
NlaIII CATG 3 cut(s) 61, 149, 318
NlaIV GGNNCC 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 188
NspI RCATGY 1 cut(s) 318
PciI ACATGT 1 cut(s) 314
PfeI GAWTC 2 cut(s) 9, 155
PflMI CCANNNNNTGG 1 cut(s) 251
PkrI GCNGC 4 cut(s) 19, 208, 241, 272
PscI ACATGT 1 cut(s) 314
PspN4I GGNNCC 1 cut(s) 301
PsuI RGATCY 1 cut(s) 255
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
SatI GCNGC 4 cut(s) 18, 207, 240, 271
Sau3AI GATC 1 cut(s) 255
SetI ASST 5 cut(s) 97, 211, 287, 305, 336
SfaNI GCATC 3 cut(s) 174, 208, 226
Sse9I AATT 3 cut(s) 169, 211, 229
StyI CCWWGG 1 cut(s) 91
TaiI ACGT 1 cut(s) 336
TasI AATT 3 cut(s) 169, 211, 229
TfiI GAWTC 2 cut(s) 9, 155
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 4 cut(s) 17, 206, 239, 270
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 2 cut(s) 134, 147
TspRI CASTG 1 cut(s) 19
Van91I CCANNNNNTGG 1 cut(s) 251
XceI RCATGY 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.