Rh1DG229500

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001155
Physical Location & Seq
Reverse (-)
44136842 .. 44137631
790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG229500.1

Sequence Viewer

Length: 372 bp
ATGGTACGAGTCAGTACTACTGCTCTTGTTGTGATTGCCATTTTCGTTGTTTTTCCAAGCATGGTTTTGGCAAAACAATATATTGTCGGAGACGATCAAGGCTGGGAGGGTACTGTTGATTATCAAGCTTGGGCAGATGGCAAAACTTTCCATGTTGGAGATGTTTTAATCTTCAATTACGAAGCTGGTAACCACGATGTTGCTCAATCAGCCAGTGCTGATGAGTTCAATGACTGTGCTTCATCTCCAGACCTGGGTACATATACTAGTGGCAACGACGCGTTAGCCTTGAACGTCGCTGGAACCTACTATTTCTTATGTGACTATCACTGCGCTATAGCTCAGCAAAAGTTTATGGTCACTGTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

123

Amino Acids

13.36

Weight (kDa)

4.15

Isoelectric Point (pI)

17.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 37 - 111 8.2e-21 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 281
AfaI GTAC 4 cut(s) 6, 16, 112, 259
AfiI CCNNNNNNNGG 1 cut(s) 254
AflIII ACRYGT 1 cut(s) 279
AgsI TTSAA 3 cut(s) 175, 229, 292
AhlI ACTAGT 1 cut(s) 266
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 3 cut(s) 128, 185, 341
AluI AGCT 3 cut(s) 128, 185, 341
Alw26I GTCTC 1 cut(s) 84
AspLEI GCGC 1 cut(s) 335
BccI CCATC 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 254
BcoDI GTCTC 1 cut(s) 84
BcuI ACTAGT 1 cut(s) 266
BfaI CTAG 2 cut(s) 267, 370
BfmI CTRYAG 1 cut(s) 336
BlpI GCTNAGC 1 cut(s) 342
BmcAI AGTACT 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 1 cut(s) 254
BpmI CTGGAG 1 cut(s) 231
Bpu1102I GCTNAGC 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 253
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 213
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 253
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 356
BseNI ACTGG 1 cut(s) 213
BseYI CCCAGC 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 254
BsmAI GTCTC 1 cut(s) 84
BsmBI CGTCTC 1 cut(s) 84
Bsp143I GATC 1 cut(s) 94
Bsp1720I GCTNAGC 1 cut(s) 342
BspCNI CTCAG 1 cut(s) 355
BspFNI CGCG 1 cut(s) 281
BspLI GGNNCC 1 cut(s) 304
BsrI ACTGG 1 cut(s) 213
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 3 cut(s) 115, 236, 364
BstDEI CTNAG 1 cut(s) 342
BstEII GGTNACC 1 cut(s) 188
BstFNI CGCG 1 cut(s) 281
BstHHI GCGC 1 cut(s) 335
BstKTI GATC 1 cut(s) 97
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 1 cut(s) 94
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 1 cut(s) 254
BstPI GGTNACC 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 252
BstSFI CTRYAG 1 cut(s) 336
BstUI CGCG 1 cut(s) 281
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 3 cut(s) 220, 328, 360
CfoI GCGC 1 cut(s) 335
CseI GACGC 1 cut(s) 287
Csp6I GTAC 4 cut(s) 5, 15, 111, 258
CviAII CATG 2 cut(s) 61, 152
CviJI RGCY 6 cut(s) 102, 128, 185, 212, 287, 341
CviKI_1 RGCY 6 cut(s) 102, 128, 185, 212, 287, 341
CviQI GTAC 4 cut(s) 5, 15, 111, 258
DdeI CTNAG 1 cut(s) 342
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eco91I GGTNACC 1 cut(s) 188
EcoO65I GGTNACC 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 252
Esp3I CGTCTC 1 cut(s) 84
FaeI CATG 2 cut(s) 64, 155
FaiI YATR 8 cut(s) 62, 81, 153, 262, 264, 319, 338, 356
FatI CATG 2 cut(s) 60, 151
FspBI CTAG 2 cut(s) 267, 370
GlaI GCGC 1 cut(s) 334
GsaI CCCAGC 1 cut(s) 106
GsuI CTGGAG 1 cut(s) 231
HgaI GACGC 1 cut(s) 287
HhaI GCGC 1 cut(s) 335
Hin1II CATG 2 cut(s) 64, 155
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HindIII AAGCTT 1 cut(s) 126
HinfI GANTC 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 1 cut(s) 89
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 1 cut(s) 367
Hpy99I CGWCG 2 cut(s) 281, 299
HpyCH4III ACNGT 3 cut(s) 115, 236, 364
HpyCH4IV ACGT 1 cut(s) 294
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 1 cut(s) 294
Hsp92II CATG 2 cut(s) 64, 155
HspAI GCGC 1 cut(s) 333
Kzo9I GATC 1 cut(s) 94
LpnPI CCDG 7 cut(s) 88, 171, 226, 239, 261, 266, 285
MaeI CTAG 2 cut(s) 267, 370
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 3 cut(s) 188, 320, 358
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 1 cut(s) 163
MluCI AATT 1 cut(s) 175
MluI ACGCGT 1 cut(s) 279
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 2 cut(s) 67, 136
MnlI CCTC 1 cut(s) 100
MseI TTAA 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 254
MvaI CCWGG 1 cut(s) 254
MvnI CGCG 1 cut(s) 281
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeII GATC 1 cut(s) 94
NlaIII CATG 2 cut(s) 64, 155
NlaIV GGNNCC 1 cut(s) 304
NmuCI GTSAC 2 cut(s) 320, 358
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 252
PspEI GGTNACC 1 cut(s) 188
PspFI CCCAGC 1 cut(s) 102
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 1 cut(s) 304
RsaI GTAC 4 cut(s) 6, 16, 112, 259
RsaNI GTAC 4 cut(s) 5, 15, 111, 258
SaqAI TTAA 1 cut(s) 167
Sau3AI GATC 1 cut(s) 94
ScaI AGTACT 1 cut(s) 16
SchI GAGTC 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 254
SetI ASST 6 cut(s) 130, 187, 255, 297, 308, 343
SfcI CTRYAG 1 cut(s) 336
SpeI ACTAGT 1 cut(s) 266
Sse9I AATT 1 cut(s) 175
SspMI CTAG 2 cut(s) 267, 370
StyD4I CCNGG 1 cut(s) 252
TaaI ACNGT 3 cut(s) 115, 236, 364
TaiI ACGT 1 cut(s) 297
TasI AATT 1 cut(s) 175
TatI WGTACW 1 cut(s) 14
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TscAI CASTG 3 cut(s) 220, 335, 367
TseFI GTSAC 2 cut(s) 320, 358
Tsp45I GTSAC 2 cut(s) 320, 358
TspDTI ATGAA 1 cut(s) 231
TspRI CASTG 3 cut(s) 220, 335, 367
XspI CTAG 2 cut(s) 267, 370
ZrmI AGTACT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.