Rh1DG229200

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001155
Physical Location & Seq
Reverse (-)
44105591 .. 44107031
1441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG229200.1

Sequence Viewer

Length: 369 bp
ATGGCGCGAATCACTGCAGCTCTTGCTGTGATAGCCTTGTTTGCTGTATTTCCGAGCATGGAGGCAACGCAGTATATTGTTGGTGATGACCAGGGTTGGAATTCTAATGTTGATTACTACTCTTGGATTGCTGGCAAAACTTTTCATGTTGGAGATTCTTTAGTTTTCAATTATGCATCTGGCGAACACAATGTGGTTGTAGCAGCAAATTCTGATGTGTATGATAAGTGTGCTACTACTCCAAACTTGGGAGTCTGGACAAGTGGCAGTGACGTCTTTACCTTGCCCACCACAGGTACCTATTATTTCTTGTGTGAATTTCATTGCGACTACAGCGAGCAGAGGATTAAGGTAGAAGTGAACAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

122

Amino Acids

13.46

Weight (kDa)

4.42

Isoelectric Point (pI)

21.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 109 2.2e-19 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 276
Acc65I GGTACC 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 296
AccII CGCG 1 cut(s) 7
AcsI RAATTY 3 cut(s) 100, 208, 317
AcyI GRCGYC 1 cut(s) 273
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 1 cut(s) 298
AfiI CCNNNNNNNGG 2 cut(s) 248, 293
AgsI TTSAA 1 cut(s) 169
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
ApeKI GCWGC 2 cut(s) 17, 203
ApoI RAATTY 3 cut(s) 100, 208, 317
Asp718I GGTACC 1 cut(s) 296
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 95
BanI GGYRCC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 29, 215
BciT130I CCWGG 1 cut(s) 92
BfmI CTRYAG 2 cut(s) 15, 331
BisI GCNGC 2 cut(s) 18, 204
BlsI GCNGC 2 cut(s) 19, 205
Bme1390I CCNGG 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 298
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 1 cut(s) 185
BsaHI GRCGYC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 91
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 293
Bse3DI GCAATG 1 cut(s) 322
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 91
BseLI CCNNNNNNNGG 2 cut(s) 248, 293
BseMI GCAATG 1 cut(s) 322
BseXI GCAGC 2 cut(s) 29, 215
Bsh1236I CGCG 1 cut(s) 7
BshNI GGYRCC 1 cut(s) 296
BslI CCNNNNNNNGG 2 cut(s) 248, 293
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 298
BspMAI CTGCAG 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 91
BssNI GRCGYC 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 1 cut(s) 365
BstACI GRCGYC 1 cut(s) 273
BstAPI GCANNNNNTGC 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 133, 338
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 1 cut(s) 7
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 41, 333
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstSFI CTRYAG 2 cut(s) 15, 331
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 2 cut(s) 29, 215
BtsI GCAGTG 2 cut(s) 12, 274
BtsIMutI CAGTG 2 cut(s) 12, 274
Cac8I GCNNGC 2 cut(s) 133, 338
CfoI GCGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 297
CviAII CATG 2 cut(s) 58, 146
CviJI RGCY 2 cut(s) 20, 35
CviKI_1 RGCY 2 cut(s) 20, 35
CviQI GTAC 1 cut(s) 297
DraIII CACNNNGTG 1 cut(s) 193
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 90
EcoT22I ATGCAT 1 cut(s) 178
FaeI CATG 2 cut(s) 61, 149
FaiI YATR 5 cut(s) 59, 75, 147, 174, 222
FatI CATG 2 cut(s) 57, 145
Fnu4HI GCNGC 2 cut(s) 18, 204
Fsp4HI GCNGC 2 cut(s) 18, 204
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 18, 204
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 273
Hin1II CATG 2 cut(s) 61, 149
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 3 cut(s) 9, 155, 252
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 2 cut(s) 54, 214
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 1 cut(s) 361
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 2 cut(s) 17, 176
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 41, 333
HpySE526I ACGT 1 cut(s) 273
Hsp92I GRCGYC 1 cut(s) 273
Hsp92II CATG 2 cut(s) 61, 149
HspAI GCGC 1 cut(s) 5
KpnI GGTACC 1 cut(s) 300
LpnPI CCDG 6 cut(s) 77, 104, 117, 165, 241, 279
Lsp1109I GCAGC 2 cut(s) 29, 215
LweI GCATC 1 cut(s) 185
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 1 cut(s) 269
MluCI AATT 4 cut(s) 100, 169, 208, 317
MlyI GAGTC 1 cut(s) 261
MmeI TCCRAC 2 cut(s) 77, 130
MnlI CCTC 2 cut(s) 55, 336
Mph1103I ATGCAT 1 cut(s) 178
MseI TTAA 1 cut(s) 348
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 41, 333
NlaIII CATG 2 cut(s) 61, 149
NlaIV GGNNCC 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 269
NsiI ATGCAT 1 cut(s) 178
PfeI GAWTC 2 cut(s) 9, 155
PkrI GCNGC 2 cut(s) 19, 205
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 298
PstI CTGCAG 1 cut(s) 19
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 2 cut(s) 18, 204
SchI GAGTC 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 92
SetI ASST 6 cut(s) 22, 276, 284, 298, 302, 354
SfaNI GCATC 1 cut(s) 185
SfcI CTRYAG 2 cut(s) 15, 331
Sse9I AATT 4 cut(s) 100, 169, 208, 317
StyD4I CCNGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 365
TaiI ACGT 1 cut(s) 276
TasI AATT 4 cut(s) 100, 169, 208, 317
TfiI GAWTC 2 cut(s) 9, 155
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 2 cut(s) 19, 274
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 2 cut(s) 17, 203
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 2 cut(s) 134, 311
TspRI CASTG 2 cut(s) 19, 274
XapI RAATTY 3 cut(s) 100, 208, 317
ZraI GACGTC 1 cut(s) 274
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.