Rroxscaffold_4G00303920

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001155
Physical Location & Seq
Forward (+)
24410160 .. 24430521
20362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00303920.1

Sequence Viewer

Length: 315 bp
ATGGCGCGAATAACTGCTGCACTTGCTGTGATTGCCTTGTTTGCTGTATTTCCGAGCATGGAGGTAACGCAGTATATTGTTGGTGATGACCGGGGTTGGAGTTCTAATGTTGATTACTACTCTTGGATTGCTGACAAAACTTTTCATGTTGGAGATTCTTTAGTGTATGATAAGTGTGCTACTACTCCAAACTTGGGGGTCTGGGCAAGTGGCAGTGACGTCTTAACCTTGCCCACCACGGGTACCTATTATTTCTTGTGTGAATTTCATTGCGACTTCAGCGAGCAGAGGATTAAAGTTGAAGTGAACAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

104

Amino Acids

11.59

Weight (kDa)

4.5

Isoelectric Point (pI)

16.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 222
Acc65I GGTACC 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 242
AccII CGCG 1 cut(s) 7
AcsI RAATTY 1 cut(s) 263
AcuI CTGAAG 1 cut(s) 262
AcyI GRCGYC 1 cut(s) 219
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 2 cut(s) 194, 239
AgsI TTSAA 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 263
Asp718I GGTACC 1 cut(s) 242
AspLEI GCGC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 95
BanI GGYRCC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 4
BcnI CCSGG 1 cut(s) 92
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 91, 237
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 239
Bse3DI GCAATG 1 cut(s) 268
BseDI CCNNGG 2 cut(s) 91, 237
BseLI CCNNNNNNNGG 2 cut(s) 194, 239
BseMI GCAATG 1 cut(s) 268
BseXI GCAGC 1 cut(s) 4
Bsh1236I CGCG 1 cut(s) 7
BshNI GGYRCC 1 cut(s) 242
BsiSI CCGG 1 cut(s) 91
BslI CCNNNNNNNGG 2 cut(s) 194, 239
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 244
BspT107I GGYRCC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 268
BssECI CCNNGG 2 cut(s) 91, 237
BssNI GRCGYC 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 311
BstACI GRCGYC 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 284
BstDSI CCRYGG 1 cut(s) 237
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 1 cut(s) 7
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 41, 279
BstSCI CCNGG 1 cut(s) 90
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 4
BtgI CCRYGG 1 cut(s) 237
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 284
CfoI GCGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 243
CviAII CATG 2 cut(s) 58, 146
CviQI GTAC 1 cut(s) 243
Eco57I CTGAAG 1 cut(s) 262
FaeI CATG 2 cut(s) 61, 149
FaiI YATR 4 cut(s) 59, 75, 147, 168
FatI CATG 2 cut(s) 57, 145
Fnu4HI GCNGC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 18
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 18
HapII CCGG 1 cut(s) 91
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 2 cut(s) 61, 149
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 1 cut(s) 155
HpaII CCGG 1 cut(s) 91
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 1 cut(s) 54
Hpy8I GTNNAC 1 cut(s) 307
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 41, 279
HpySE526I ACGT 1 cut(s) 219
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 2 cut(s) 61, 149
HspAI GCGC 1 cut(s) 5
KpnI GGTACC 1 cut(s) 246
LpnPI CCDG 2 cut(s) 104, 187
Lsp1109I GCAGC 1 cut(s) 4
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 2 cut(s) 64, 215
MluCI AATT 1 cut(s) 263
MmeI TCCRAC 2 cut(s) 77, 130
MnlI CCTC 2 cut(s) 55, 282
MseI TTAA 2 cut(s) 224, 294
MspI CCGG 1 cut(s) 91
MspR9I CCNGG 1 cut(s) 92
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 41, 279
NciI CCSGG 1 cut(s) 92
NlaIII CATG 2 cut(s) 61, 149
NlaIV GGNNCC 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 215
PfeI GAWTC 1 cut(s) 155
PkrI GCNGC 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 244
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
SaqAI TTAA 2 cut(s) 224, 294
SatI GCNGC 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 92
SetI ASST 4 cut(s) 66, 222, 230, 248
Sse9I AATT 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 311
TaiI ACGT 1 cut(s) 222
TasI AATT 1 cut(s) 263
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 2 cut(s) 224, 294
Tru9I TTAA 2 cut(s) 224, 294
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 215
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 2 cut(s) 134, 257
TspRI CASTG 1 cut(s) 220
XapI RAATTY 1 cut(s) 263
ZraI GACGTC 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.