pycom02g16340

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0001155
Physical Location & Seq
Forward (+)
13443609 .. 13444223
615 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g16340.1

Sequence Viewer

Length: 342 bp
ATGGCACGAGTCACTTATCTTCTCGTGATCGCGCTTCTCGTTCTTCCTAGCGTGGTGTTCGCGACACAGTATGTCGTCGGAGATGACGAAGGCTGGAATTCAGGAGTTGATTACTATGCTTGGGTTGAGGGAAAAACATTCTATGTTGGAGATTCATTAGGTGCCCACAATGTGGTTGTAGTTGATGCTAACGGGTATGATCAATGTCTTGCGTCTCCAAACAACGGTGCTTATAACAGCGGCCACGACGTACTGACGTTTAACGTTGCCGGGGACTACTATTTCATATGTGAATGGCACTGCAATCACACCGACCAGAAGCTTAAGGTCACCGTAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

114

Amino Acids

12.47

Weight (kDa)

4.46

Isoelectric Point (pI)

20.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 32 - 102 2.7e-13 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 234
AccB1I GGYRCC 1 cut(s) 161
AccB7I CCANNNNNTGG 1 cut(s) 172
AccII CGCG 2 cut(s) 32, 62
AciI CCGC 1 cut(s) 240
AclI AACGTT 1 cut(s) 264
AcoI YGGCCR 1 cut(s) 241
AcsI RAATTY 1 cut(s) 97
AdeI CACNNNGTG 1 cut(s) 172
AfaI GTAC 1 cut(s) 252
AfiI CCNNNNNNNGG 2 cut(s) 172, 224
AflII CTTAAG 1 cut(s) 323
AluBI AGCT 1 cut(s) 322
AluI AGCT 1 cut(s) 322
Alw26I GTCTC 1 cut(s) 219
AoxI GGCC 1 cut(s) 241
ApoI RAATTY 1 cut(s) 97
AspLEI GCGC 1 cut(s) 34
AsuC2I CCSGG 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 322
BaeGI GKGCMC 1 cut(s) 166
BanI GGYRCC 1 cut(s) 161
BauI CACGAG 2 cut(s) 6, 23
BclI TGATCA 1 cut(s) 199
BcnI CCSGG 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 2 cut(s) 48, 340
BfrI CTTAAG 1 cut(s) 323
BisI GCNGC 1 cut(s) 241
BlsI GCNGC 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 271
BmsI GCATC 1 cut(s) 175
BpuMI CCSGG 1 cut(s) 271
BsaJI CCNNGG 1 cut(s) 270
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 224
BseDI CCNNGG 1 cut(s) 270
BseLI CCNNNNNNNGG 2 cut(s) 172, 224
BseSI GKGCMC 1 cut(s) 166
Bsh1236I CGCG 2 cut(s) 32, 62
BshFI GGCC 1 cut(s) 243
BshNI GGYRCC 1 cut(s) 161
BsiSI CCGG 1 cut(s) 270
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 2 cut(s) 172, 224
BsmAI GTCTC 1 cut(s) 219
BsmBI CGTCTC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 287
BsnI GGCC 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 2 cut(s) 27, 199
Bsp68I TCGCGA 1 cut(s) 62
BspACI CCGC 1 cut(s) 240
BspANI GGCC 1 cut(s) 243
BspFNI CGCG 2 cut(s) 32, 62
BspLI GGNNCC 1 cut(s) 163
BspT107I GGYRCC 1 cut(s) 161
BspTI CTTAAG 1 cut(s) 323
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 2 cut(s) 27, 199
BssSI CACGAG 2 cut(s) 6, 23
Bst2BI CACGAG 2 cut(s) 6, 23
Bst4CI ACNGT 3 cut(s) 69, 227, 334
BstAFI CTTAAG 1 cut(s) 323
BstEII GGTNACC 1 cut(s) 328
BstFNI CGCG 2 cut(s) 32, 62
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 2 cut(s) 30, 202
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 2 cut(s) 27, 199
BstPI GGTNACC 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 269
BstSLI GKGCMC 1 cut(s) 166
BstUI CGCG 2 cut(s) 32, 62
BsuRI GGCC 1 cut(s) 243
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 298
BtuMI TCGCGA 1 cut(s) 62
CfoI GCGC 1 cut(s) 34
CseI GACGC 1 cut(s) 201
Csp6I GTAC 1 cut(s) 251
CviJI RGCY 3 cut(s) 93, 243, 322
CviKI_1 RGCY 3 cut(s) 93, 243, 322
CviQI GTAC 1 cut(s) 251
DpnI GATC 2 cut(s) 29, 201
DpnII GATC 2 cut(s) 27, 199
DraIII CACNNNGTG 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 241
Eco91I GGTNACC 1 cut(s) 328
EcoO65I GGTNACC 1 cut(s) 328
EcoRI GAATTC 1 cut(s) 97
Esp3I CGTCTC 1 cut(s) 219
FaiI YATR 7 cut(s) 72, 117, 144, 198, 234, 287, 289
FaqI GGGAC 1 cut(s) 287
FauNDI CATATG 1 cut(s) 287
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 241
Fsp4HI GCNGC 1 cut(s) 241
FspBI CTAG 2 cut(s) 48, 340
GlaI GCGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 241
HaeIII GGCC 1 cut(s) 243
HapII CCGG 1 cut(s) 270
HgaI GACGC 1 cut(s) 201
HhaI GCGC 1 cut(s) 34
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HindIII AAGCTT 1 cut(s) 320
HinfI GANTC 2 cut(s) 9, 152
HpaII CCGG 1 cut(s) 270
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 3 cut(s) 25, 61, 102
Hpy8I GTNNAC 1 cut(s) 337
Hpy99I CGWCG 2 cut(s) 80, 251
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 3 cut(s) 69, 227, 334
HpyCH4IV ACGT 3 cut(s) 249, 257, 264
HpyCH4V TGCA 1 cut(s) 303
HpySE526I ACGT 3 cut(s) 249, 257, 264
HspAI GCGC 1 cut(s) 32
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 2 cut(s) 27, 199
LpnPI CCDG 4 cut(s) 79, 87, 283, 329
LweI GCATC 1 cut(s) 175
MaeI CTAG 2 cut(s) 48, 340
MaeII ACGT 3 cut(s) 249, 257, 264
MaeIII GTNAC 2 cut(s) 10, 328
MalI GATC 2 cut(s) 29, 201
MboI GATC 2 cut(s) 27, 199
MboII GAAGA 2 cut(s) 11, 35
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 1 cut(s) 97
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 2 cut(s) 58, 127
MnlI CCTC 1 cut(s) 121
MseI TTAA 2 cut(s) 261, 324
MspA1I CMGCKG 1 cut(s) 240
MspCI CTTAAG 1 cut(s) 323
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 1 cut(s) 271
MvnI CGCG 2 cut(s) 32, 62
NciI CCSGG 1 cut(s) 271
NdeI CATATG 1 cut(s) 287
NdeII GATC 2 cut(s) 27, 199
NlaIV GGNNCC 1 cut(s) 163
NmuCI GTSAC 2 cut(s) 10, 328
NruI TCGCGA 1 cut(s) 62
PcsI WCGNNNNNNNCGW 2 cut(s) 36, 84
PfeI GAWTC 1 cut(s) 152
PflMI CCANNNNNTGG 1 cut(s) 172
PkrI GCNGC 1 cut(s) 242
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PsiI TTATAA 1 cut(s) 234
Psp1406I AACGTT 1 cut(s) 264
PspEI GGTNACC 1 cut(s) 328
PspN4I GGNNCC 1 cut(s) 163
RruI TCGCGA 1 cut(s) 62
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
SaqAI TTAA 2 cut(s) 261, 324
SatI GCNGC 1 cut(s) 241
Sau3AI GATC 2 cut(s) 27, 199
SchI GAGTC 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 271
SduI GDGCHC 1 cut(s) 166
SetI ASST 6 cut(s) 163, 252, 260, 267, 324, 330
SfaNI GCATC 1 cut(s) 175
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 1 cut(s) 97
SsiI CCGC 1 cut(s) 240
SspMI CTAG 2 cut(s) 48, 340
StyD4I CCNGG 1 cut(s) 269
TaaI ACNGT 3 cut(s) 69, 227, 334
TaiI ACGT 3 cut(s) 252, 260, 267
TasI AATT 1 cut(s) 97
TauI GCSGC 1 cut(s) 243
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 2 cut(s) 261, 324
Tru9I TTAA 2 cut(s) 261, 324
TscAI CASTG 1 cut(s) 305
TseFI GTSAC 2 cut(s) 10, 328
Tsp45I GTSAC 2 cut(s) 10, 328
TspDTI ATGAA 2 cut(s) 144, 274
TspRI CASTG 1 cut(s) 305
Van91I CCANNNNNTGG 1 cut(s) 172
Vha464I CTTAAG 1 cut(s) 323
XapI RAATTY 1 cut(s) 97
XspI CTAG 2 cut(s) 48, 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.