RchiOBHm_Chr1g0351271

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001155
Physical Location & Seq
Reverse (-)
44520721 .. 44521957
1237 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57706

Sequence Viewer

Length: 369 bp
ATGGCGCGAATCACTGCTGCTCTTGCTGTGATTGCCTTTTTTGCTATATTTCCGAGCATGGAGGCAACACAGTATATTGTTGGTGATGACCAAGGTTGGAGTTCTGATGTTGATTACTACTCTTGGATTGCTGGCAAAACTTTTCATGTTGGAGATTCTTTAGTTTTCAATTATACATCTGGCGAACACAATGTGGTTGTAGCAGCAAATTCTGATGTGTATGATCAGTGTGCTACTACTCCAAACTTTGGAGTCTGGATAGGTGGCAGTGACGTCTTTACAGTGCCCACCACAGGTACCTATTATTTCTTGTGTGAATTTCATTGCGAAAACAGCGAGCAGAGGATTAAGGTAGAAGTGAACAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

122

Amino Acids

13.48

Weight (kDa)

4.24

Isoelectric Point (pI)

18.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 110 8.2e-17 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 276
Acc65I GGTACC 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 296
AccB7I CCANNNNNTGG 1 cut(s) 248
AccII CGCG 1 cut(s) 7
AcsI RAATTY 2 cut(s) 208, 317
AcyI GRCGYC 1 cut(s) 273
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 1 cut(s) 298
AfiI CCNNNNNNNGG 2 cut(s) 248, 293
AgsI TTSAA 1 cut(s) 169
ApeKI GCWGC 2 cut(s) 17, 203
ApoI RAATTY 2 cut(s) 208, 317
Asp718I GGTACC 1 cut(s) 296
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 288
BanI GGYRCC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 4, 215
BclI TGATCA 1 cut(s) 223
BisI GCNGC 2 cut(s) 18, 204
BlsI GCNGC 2 cut(s) 19, 205
BmiI GGNNCC 1 cut(s) 298
BsaHI GRCGYC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 91
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 293
Bse3DI GCAATG 1 cut(s) 322
BseDI CCNNGG 1 cut(s) 91
BseLI CCNNNNNNNGG 2 cut(s) 248, 293
BseMI GCAATG 1 cut(s) 322
BseSI GKGCMC 1 cut(s) 288
BseXI GCAGC 2 cut(s) 4, 215
Bsh1236I CGCG 1 cut(s) 7
BshNI GGYRCC 1 cut(s) 296
BslI CCNNNNNNNGG 2 cut(s) 248, 293
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 1 cut(s) 223
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 298
BspT107I GGYRCC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 1 cut(s) 223
BssNI GRCGYC 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 91
Bst4CI ACNGT 3 cut(s) 72, 283, 365
BstACI GRCGYC 1 cut(s) 273
BstC8I GCNNGC 2 cut(s) 133, 338
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 226
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 41, 333
BstSLI GKGCMC 1 cut(s) 288
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 2 cut(s) 4, 215
BtsI GCAGTG 2 cut(s) 12, 274
BtsIMutI CAGTG 4 cut(s) 12, 233, 274, 288
Cac8I GCNNGC 2 cut(s) 133, 338
CfoI GCGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 297
CviAII CATG 2 cut(s) 58, 146
CviQI GTAC 1 cut(s) 297
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
DraIII CACNNNGTG 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 2 cut(s) 61, 149
FaiI YATR 6 cut(s) 47, 59, 75, 147, 174, 222
FatI CATG 2 cut(s) 57, 145
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 2 cut(s) 18, 204
Fsp4HI GCNGC 2 cut(s) 18, 204
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 18, 204
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 273
Hin1II CATG 2 cut(s) 61, 149
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 3 cut(s) 9, 155, 252
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 3 cut(s) 54, 106, 214
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 1 cut(s) 361
HpyCH4III ACNGT 3 cut(s) 72, 283, 365
HpyCH4IV ACGT 1 cut(s) 273
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 41, 333
HpySE526I ACGT 1 cut(s) 273
Hsp92I GRCGYC 1 cut(s) 273
Hsp92II CATG 2 cut(s) 61, 149
HspAI GCGC 1 cut(s) 5
KpnI GGTACC 1 cut(s) 300
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 1 cut(s) 223
LpnPI CCDG 4 cut(s) 117, 165, 241, 279
Lsp1109I GCAGC 2 cut(s) 4, 215
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 1 cut(s) 269
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 3 cut(s) 169, 208, 317
MlyI GAGTC 1 cut(s) 261
MmeI TCCRAC 2 cut(s) 77, 130
MnlI CCTC 2 cut(s) 55, 336
MseI TTAA 1 cut(s) 348
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 41, 333
NdeII GATC 1 cut(s) 223
NlaIII CATG 2 cut(s) 61, 149
NlaIV GGNNCC 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 269
PfeI GAWTC 2 cut(s) 9, 155
PflMI CCANNNNNTGG 1 cut(s) 248
PkrI GCNGC 2 cut(s) 19, 205
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 298
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 2 cut(s) 18, 204
Sau3AI GATC 1 cut(s) 223
SchI GAGTC 1 cut(s) 261
SduI GDGCHC 1 cut(s) 288
SetI ASST 6 cut(s) 97, 265, 276, 298, 302, 354
Sse9I AATT 3 cut(s) 169, 208, 317
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 3 cut(s) 72, 283, 365
TaiI ACGT 1 cut(s) 276
TasI AATT 3 cut(s) 169, 208, 317
TfiI GAWTC 2 cut(s) 9, 155
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 4 cut(s) 19, 233, 274, 288
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 2 cut(s) 17, 203
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 2 cut(s) 134, 311
TspRI CASTG 4 cut(s) 19, 233, 274, 288
Van91I CCANNNNNTGG 1 cut(s) 248
XapI RAATTY 2 cut(s) 208, 317
ZraI GACGTC 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.