Rw1G020200

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001155
Physical Location & Seq
Reverse (-)
43777472 .. 43777929
458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G020200.1

Sequence Viewer

Length: 300 bp
ATGGCACGAGTCAGTACTACTGCTCTTGTTGTGATTGCCATTTTCGTTGTTTTTCCAAGCATGGTTTTGGCAAAACAATATATTGTCGGAGACGATCAAGGCTGGGAGGGTACTGTTGATTATCAAGCTTGGGCAGATCGCAAAACTTTCCATTTCAATGACTGTGCTTCATCTCCGGACTTGGGTACATATACTAGTGGCAACGACGCGCTAGCCTTGAGCGTCGCTGGAACCTACTATTTCTTATGTGACTATCACTGCGCTGAAGCTGAGCAAAAGTTTATGGTCACTGTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

99

Amino Acids

10.92

Weight (kDa)

4.42

Isoelectric Point (pI)

18.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 209
AccIII TCCGGA 1 cut(s) 175
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 3 cut(s) 16, 112, 187
AfiI CCNNNNNNNGG 1 cut(s) 182
AgsI TTSAA 1 cut(s) 157
AhlI ACTAGT 1 cut(s) 194
AluBI AGCT 2 cut(s) 128, 269
AluI AGCT 2 cut(s) 128, 269
Alw26I GTCTC 1 cut(s) 84
Aor13HI TCCGGA 1 cut(s) 175
AspLEI GCGC 2 cut(s) 211, 263
AsuNHI GCTAGC 1 cut(s) 211
BauI CACGAG 1 cut(s) 6
BcoDI GTCTC 1 cut(s) 84
BcuI ACTAGT 1 cut(s) 194
BfaI CTAG 3 cut(s) 195, 212, 298
BlpI GCTNAGC 1 cut(s) 270
BmcAI AGTACT 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 232
BmtI GCTAGC 1 cut(s) 215
Bpu1102I GCTNAGC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 238
BsaWI WCCGGW 1 cut(s) 175
Bsc4I CCNNNNNNNGG 1 cut(s) 182
BseAI TCCGGA 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 182
BseMII CTCAG 1 cut(s) 261
BseYI CCCAGC 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 209
BsiSI CCGG 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 182
BsmAI GTCTC 1 cut(s) 84
BsmBI CGTCTC 1 cut(s) 84
Bsp13I TCCGGA 1 cut(s) 175
Bsp143I GATC 2 cut(s) 94, 136
Bsp1720I GCTNAGC 1 cut(s) 270
BspCNI CTCAG 1 cut(s) 262
BspEI TCCGGA 1 cut(s) 175
BspFNI CGCG 1 cut(s) 209
BspLI GGNNCC 1 cut(s) 232
BspOI GCTAGC 1 cut(s) 215
BssMI GATC 2 cut(s) 94, 136
BssSI CACGAG 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 6
Bst4CI ACNGT 3 cut(s) 115, 164, 292
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 1 cut(s) 270
BstFNI CGCG 1 cut(s) 209
BstHHI GCGC 2 cut(s) 211, 263
BstKTI GATC 2 cut(s) 97, 139
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 2 cut(s) 94, 136
BstUI CGCG 1 cut(s) 209
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 2 cut(s) 256, 288
Cac8I GCNNGC 1 cut(s) 213
CfoI GCGC 2 cut(s) 211, 263
CseI GACGC 2 cut(s) 211, 215
Csp6I GTAC 3 cut(s) 15, 111, 186
CviAII CATG 1 cut(s) 61
CviJI RGCY 4 cut(s) 102, 128, 215, 269
CviKI_1 RGCY 4 cut(s) 102, 128, 215, 269
CviQI GTAC 3 cut(s) 15, 111, 186
DdeI CTNAG 1 cut(s) 270
DpnI GATC 2 cut(s) 96, 138
DpnII GATC 2 cut(s) 94, 136
Eco57I CTGAAG 1 cut(s) 285
Esp3I CGTCTC 1 cut(s) 84
FaeI CATG 1 cut(s) 64
FaiI YATR 6 cut(s) 62, 81, 190, 192, 247, 284
FatI CATG 1 cut(s) 60
FspBI CTAG 3 cut(s) 195, 212, 298
GlaI GCGC 2 cut(s) 210, 262
GsaI CCCAGC 1 cut(s) 106
HapII CCGG 1 cut(s) 176
HgaI GACGC 2 cut(s) 211, 215
HhaI GCGC 2 cut(s) 211, 263
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 2 cut(s) 209, 261
HinP1I GCGC 2 cut(s) 209, 261
HindIII AAGCTT 1 cut(s) 126
HinfI GANTC 1 cut(s) 9
HpaII CCGG 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 1 cut(s) 89
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 1 cut(s) 295
Hpy99I CGWCG 2 cut(s) 209, 227
HpyCH4III ACNGT 3 cut(s) 115, 164, 292
HpyF3I CTNAG 1 cut(s) 270
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 2 cut(s) 209, 261
Kpn2I TCCGGA 1 cut(s) 175
Kzo9I GATC 2 cut(s) 94, 136
LpnPI CCDG 3 cut(s) 88, 189, 213
MaeI CTAG 3 cut(s) 195, 212, 298
MaeIII GTNAC 2 cut(s) 248, 286
MalI GATC 2 cut(s) 96, 138
MboI GATC 2 cut(s) 94, 136
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 1 cut(s) 100
MroI TCCGGA 1 cut(s) 175
MslI CAYNNNNRTG 1 cut(s) 156
MspI CCGG 1 cut(s) 176
MvnI CGCG 1 cut(s) 209
NdeII GATC 2 cut(s) 94, 136
NheI GCTAGC 1 cut(s) 211
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 2 cut(s) 248, 286
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PspFI CCCAGC 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 232
RsaI GTAC 3 cut(s) 16, 112, 187
RsaNI GTAC 3 cut(s) 15, 111, 186
RseI CAYNNNNRTG 1 cut(s) 156
Sau3AI GATC 2 cut(s) 94, 136
ScaI AGTACT 1 cut(s) 16
SchI GAGTC 1 cut(s) 18
SetI ASST 3 cut(s) 130, 236, 271
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
SpeI ACTAGT 1 cut(s) 194
SspMI CTAG 3 cut(s) 195, 212, 298
TaaI ACNGT 3 cut(s) 115, 164, 292
TatI WGTACW 1 cut(s) 14
TscAI CASTG 2 cut(s) 263, 295
TseFI GTSAC 2 cut(s) 248, 286
Tsp45I GTSAC 2 cut(s) 248, 286
TspDTI ATGAA 1 cut(s) 159
TspRI CASTG 2 cut(s) 263, 295
XspI CTAG 3 cut(s) 195, 212, 298
ZrmI AGTACT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.