Rh1CG216400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001155
Physical Location & Seq
Reverse (-)
46557594 .. 46568691
11098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG216400.1

Sequence Viewer

Length: 288 bp
ATGCTAGACAAAATACCAAACAGGTCCAGGCTCCAGTCCATTATGCGCAAACACAAATGGCGCGTCAGGCTTCTCTCTAGGATGTACACACCGACGACAATACTGGCATTGATGCAAGAAGTTGCTCACTTCTTCAGAACAAATACACTCTCCCTCTTCTCCGTCTCTGTTCACGAGGATGCCGGGTTCGACGACTACGAAGAGAAGTCTCCATCGGCTCCGGCGGTTCGATTCCCTGTGGCACAAGCTTTGAGGATGAGGAGCCACTCCTTGACGATAACTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

11.03

Weight (kDa)

10.54

Isoelectric Point (pI)

53.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 47
AccII CGCG 1 cut(s) 63
AciI CCGC 1 cut(s) 224
AcuI CTGAAG 1 cut(s) 118
AfaI GTAC 1 cut(s) 86
AjnI CCWGG 1 cut(s) 26
AloI GAACNNNNNNTCC 2 cut(s) 170, 202
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
Alw26I GTCTC 2 cut(s) 169, 213
ArsI GACNNNNNNTTYG 2 cut(s) 48, 80
AspLEI GCGC 2 cut(s) 48, 63
AspS9I GGNCC 1 cut(s) 24
AsuC2I CCSGG 1 cut(s) 184
AvaII GGWCC 1 cut(s) 24
BauI CACGAG 1 cut(s) 173
BccI CCATC 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 28
BcnI CCSGG 1 cut(s) 184
BcoDI GTCTC 2 cut(s) 169, 213
BfaI CTAG 2 cut(s) 5, 78
Bme1390I CCNGG 2 cut(s) 28, 184
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 3 cut(s) 32, 219, 263
BmrFI CCNGG 2 cut(s) 28, 184
BmsI GCATC 2 cut(s) 102, 169
BpmI CTGGAG 1 cut(s) 17
BpuMI CCSGG 1 cut(s) 184
BsaXI ACNNNNNCTCC 1 cut(s) 265
Bse1I ACTGG 2 cut(s) 34, 108
BseBI CCWGG 1 cut(s) 28
BseGI GGATG 3 cut(s) 87, 184, 261
BseNI ACTGG 2 cut(s) 34, 108
BseRI GAGGAG 1 cut(s) 274
Bsh1236I CGCG 1 cut(s) 63
BsiSI CCGG 2 cut(s) 183, 221
BsmAI GTCTC 2 cut(s) 169, 213
BsmBI CGTCTC 1 cut(s) 169
Bsp1407I TGTACA 1 cut(s) 84
BspACI CCGC 1 cut(s) 224
BspFNI CGCG 1 cut(s) 63
BspLI GGNNCC 3 cut(s) 32, 219, 263
BsrGI TGTACA 1 cut(s) 84
BsrI ACTGG 2 cut(s) 34, 108
BssSI CACGAG 1 cut(s) 173
Bst2BI CACGAG 1 cut(s) 173
Bst2UI CCWGG 1 cut(s) 28
Bst6I CTCTTC 2 cut(s) 161, 195
BstAUI TGTACA 1 cut(s) 84
BstF5I GGATG 3 cut(s) 87, 184, 261
BstFNI CGCG 1 cut(s) 63
BstHHI GCGC 2 cut(s) 48, 63
BstMAI GTCTC 2 cut(s) 169, 213
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstNI CCWGG 1 cut(s) 28
BstSCI CCNGG 2 cut(s) 26, 182
BstUI CGCG 1 cut(s) 63
BtsCI GGATG 3 cut(s) 87, 184, 261
CfoI GCGC 2 cut(s) 48, 63
Cfr13I GGNCC 1 cut(s) 24
CseI GACGC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 85
CviJI RGCY 5 cut(s) 31, 70, 218, 248, 264
CviKI_1 RGCY 5 cut(s) 31, 70, 218, 248, 264
CviQI GTAC 1 cut(s) 85
Eam1104I CTCTTC 2 cut(s) 161, 195
EarI CTCTTC 2 cut(s) 161, 195
Eco47I GGWCC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 26
Esp3I CGTCTC 1 cut(s) 169
FaiI YATR 1 cut(s) 44
FokI GGATG 3 cut(s) 94, 191, 268
FspBI CTAG 2 cut(s) 5, 78
FspI TGCGCA 1 cut(s) 47
GlaI GCGC 2 cut(s) 47, 62
GsuI CTGGAG 1 cut(s) 17
HapII CCGG 2 cut(s) 183, 221
HgaI GACGC 1 cut(s) 52
HhaI GCGC 2 cut(s) 48, 63
Hin6I GCGC 2 cut(s) 46, 61
HinP1I GCGC 2 cut(s) 46, 61
HindIII AAGCTT 1 cut(s) 246
HinfI GANTC 1 cut(s) 231
HpaII CCGG 2 cut(s) 183, 221
Hpy166II GTNNAC 2 cut(s) 87, 172
Hpy188I TCNGA 1 cut(s) 137
Hpy188III TCNNGA 1 cut(s) 173
Hpy8I GTNNAC 2 cut(s) 87, 172
Hpy99I CGWCG 2 cut(s) 97, 194
HpyCH4V TGCA 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HspAI GCGC 2 cut(s) 46, 61
LmnI GCTCC 3 cut(s) 36, 223, 261
LpnPI CCDG 9 cut(s) 7, 13, 40, 47, 52, 89, 196, 234, 249
LweI GCATC 2 cut(s) 102, 169
MaeI CTAG 2 cut(s) 5, 78
MboII GAAGA 3 cut(s) 124, 148, 212
MnlI CCTC 4 cut(s) 164, 169, 246, 252
MslI CAYNNNNRTG 1 cut(s) 177
MspI CCGG 2 cut(s) 183, 221
MspR9I CCNGG 2 cut(s) 28, 184
MvaI CCWGG 1 cut(s) 28
MvnI CGCG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 67
NciI CCSGG 1 cut(s) 184
NlaIV GGNNCC 3 cut(s) 32, 219, 263
NsbI TGCGCA 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PfeI GAWTC 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 26
PspGI CCWGG 1 cut(s) 26
PspN4I GGNNCC 3 cut(s) 32, 219, 263
PspPI GGNCC 1 cut(s) 24
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 1 cut(s) 177
Sau96I GGNCC 1 cut(s) 24
ScrFI CCNGG 2 cut(s) 28, 184
SetI ASST 2 cut(s) 26, 250
SfaNI GCATC 2 cut(s) 102, 169
SinI GGWCC 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 177
SsiI CCGC 1 cut(s) 224
SspMI CTAG 2 cut(s) 5, 78
StyD4I CCNGG 2 cut(s) 26, 182
TaqI TCGA 2 cut(s) 189, 229
TatI WGTACW 1 cut(s) 84
TfiI GAWTC 1 cut(s) 231
TspGWI ACGGA 1 cut(s) 151
VpaK11BI GGWCC 1 cut(s) 24
XspI CTAG 2 cut(s) 5, 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.