Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001155

Physical Location & Seq

Genomic Coordinates Reverse (-)

46616825 .. 46617311

Gene Structure 487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG216700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCACGAGTCAGTACTACTGCTCTTGTTGTGATTGCCATTTTCGTTGTTTTTCCAAGCATGGTTTTGGCAAAACAATATATTGTCGGAGACGATCAAGGCTGGGAGGGTACTGTTGATTATCAAGCTTGGGCAGATCGCAAAACTTTCCATGTTGGAGATGTTTTAATCTTCAATTACGAAGCCGGTAACCACGATGTTGCTCAATCAGCCAGTGCTGAAGAGTTCAATGACTGTGCTTCATCTCCGGACTTGGGTACATATACTAGTGGCAACGACGCGCTAGCCTTGAGCGTCGCTGGAACCTACTATTTCTTATGTGACTATCACTGCGCTGAAGCTGAGCAAAAGTTTATGGTCACTGTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

123

Amino Acids

13.44

Weight (kDa)

4.21

Isoelectric Point (pI)

21.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	37 - 111	2.8e-20	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001155)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12420 FvH4_7g12430 FvH4_7g12440
malus_domestica	MD02G1199200.v1.1
prunus_persica	Prupe.2G149200_v2.0.a1
pyrus_communis	pycom02g16320 pycom02g16340
rosa_chinensis	RchiOBHm_Chr1g0351161 RchiOBHm_Chr1g0351231 RchiOBHm_Chr1g0351241 RchiOBHm_Chr1g0351251 RchiOBHm_Chr1g0351261 RchiOBHm_Chr1g0351271 RchiOBHm_Chr1g0351311 RchiOBHm_Chr1g0352011 RchiOBHm_Chr1g0352031 RchiOBHm_Chr1g0352041
rosa_laevigata	RLG00000001967 RLG00000028366
rosa_multiflora	Rmu_sc0002464.1_g000001 Rmu_sc0003271.1_g000014 Rmu_sc0003700.1_g000010 Rmu_sc0009891.1_g000010
rosa_roxburghii	Rroxscaffold_4G00303340 Rroxscaffold_4G00303890 Rroxscaffold_4G00303920 Rroxscaffold_4G00303940 Rroxscaffold_4G00303950
rosa_rugosa	Rorug01G0217100 Rorug01G0217200 Rorug01G0217300 Rorug01G0223600
rosa_samantha	Rh1BG201800 Rh1BG201900 Rh1BG202000 Rh1BG202300 Rh1BG207900 Rh1BG208300 Rh1CG215300 Rh1CG215800 Rh1CG215900 Rh1CG216200 Rh1CG216400 Rh1CG216500 Rh1CG216700 Rh1CG222000 Rh1CG222500 Rh1DG229100 Rh1DG229200 Rh1DG229300 Rh1DG229500 Rh1DG234900
rosa_wichuraiana	Rw1G020120 Rw1G020140 Rw1G020160 Rw1G020200 Rw1G020660 Rw1G020670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	281
AccIII	TCCGGA	1 cut(s)	247
AcuI	CTGAAG	2 cut(s)	240, 357
AfaI	GTAC	3 cut(s)	16, 112, 259
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	2 cut(s)	175, 229
AhlI	ACTAGT	1 cut(s)	266
AluBI	AGCT	2 cut(s)	128, 341
AluI	AGCT	2 cut(s)	128, 341
Alw26I	GTCTC	1 cut(s)	84
Aor13HI	TCCGGA	1 cut(s)	247
AspLEI	GCGC	2 cut(s)	283, 335
AsuNHI	GCTAGC	1 cut(s)	283
BauI	CACGAG	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	84
BcuI	ACTAGT	1 cut(s)	266
BfaI	CTAG	3 cut(s)	267, 284, 370
BlpI	GCTNAGC	1 cut(s)	342
BmcAI	AGTACT	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	304
BmtI	GCTAGC	1 cut(s)	287
Bpu1102I	GCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	310
BsaWI	WCCGGW	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	213
BseAI	TCCGGA	1 cut(s)	247
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	1 cut(s)	213
BseYI	CCCAGC	1 cut(s)	102
Bsh1236I	CGCG	1 cut(s)	281
BsiSI	CCGG	2 cut(s)	186, 248
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	1 cut(s)	84
BsmBI	CGTCTC	1 cut(s)	84
Bsp13I	TCCGGA	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	94, 136
Bsp1720I	GCTNAGC	1 cut(s)	342
BspCNI	CTCAG	1 cut(s)	334
BspEI	TCCGGA	1 cut(s)	247
BspFNI	CGCG	1 cut(s)	281
BspLI	GGNNCC	1 cut(s)	304
BspOI	GCTAGC	1 cut(s)	287
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	213
BssAI	RCCGGY	1 cut(s)	185
BssMI	GATC	2 cut(s)	94, 136
BssSI	CACGAG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	6
Bst4CI	ACNGT	3 cut(s)	115, 236, 364
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	1 cut(s)	342
BstEII	GGTNACC	1 cut(s)	188
BstFNI	CGCG	1 cut(s)	281
BstHHI	GCGC	2 cut(s)	283, 335
BstKTI	GATC	2 cut(s)	97, 139
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	2 cut(s)	94, 136
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstPI	GGTNACC	1 cut(s)	188
BstUI	CGCG	1 cut(s)	281
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	3 cut(s)	220, 328, 360
Cac8I	GCNNGC	1 cut(s)	285
CfoI	GCGC	2 cut(s)	283, 335
Cfr10I	RCCGGY	1 cut(s)	185
CseI	GACGC	2 cut(s)	283, 287
Csp6I	GTAC	3 cut(s)	15, 111, 258
CviAII	CATG	2 cut(s)	61, 152
CviJI	RGCY	6 cut(s)	102, 128, 185, 212, 287, 341
CviKI_1	RGCY	6 cut(s)	102, 128, 185, 212, 287, 341
CviQI	GTAC	3 cut(s)	15, 111, 258
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	2 cut(s)	96, 138
DpnII	GATC	2 cut(s)	94, 136
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco57I	CTGAAG	2 cut(s)	240, 357
Eco91I	GGTNACC	1 cut(s)	188
EcoO65I	GGTNACC	1 cut(s)	188
Esp3I	CGTCTC	1 cut(s)	84
FaeI	CATG	2 cut(s)	64, 155
FaiI	YATR	7 cut(s)	62, 81, 153, 262, 264, 319, 356
FatI	CATG	2 cut(s)	60, 151
FspBI	CTAG	3 cut(s)	267, 284, 370
GlaI	GCGC	2 cut(s)	282, 334
GsaI	CCCAGC	1 cut(s)	106
HapII	CCGG	2 cut(s)	186, 248
HgaI	GACGC	2 cut(s)	283, 287
HhaI	GCGC	2 cut(s)	283, 335
Hin1II	CATG	2 cut(s)	64, 155
Hin6I	GCGC	2 cut(s)	281, 333
HinP1I	GCGC	2 cut(s)	281, 333
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	1 cut(s)	9
HpaII	CCGG	2 cut(s)	186, 248
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	1 cut(s)	89
Hpy188III	TCNNGA	1 cut(s)	248
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	2 cut(s)	281, 299
HpyCH4III	ACNGT	3 cut(s)	115, 236, 364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	1 cut(s)	342
Hsp92II	CATG	2 cut(s)	64, 155
HspAI	GCGC	2 cut(s)	281, 333
Kpn2I	TCCGGA	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	94, 136
LpnPI	CCDG	5 cut(s)	88, 199, 226, 261, 285
MaeI	CTAG	3 cut(s)	267, 284, 370
MaeIII	GTNAC	3 cut(s)	188, 320, 358
MalI	GATC	2 cut(s)	96, 138
MboI	GATC	2 cut(s)	94, 136
MboII	GAAGA	2 cut(s)	163, 233
MluCI	AATT	1 cut(s)	175
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	2 cut(s)	67, 136
MnlI	CCTC	1 cut(s)	100
MroI	TCCGGA	1 cut(s)	247
MseI	TTAA	1 cut(s)	167
MspI	CCGG	2 cut(s)	186, 248
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	209
NdeII	GATC	2 cut(s)	94, 136
NheI	GCTAGC	1 cut(s)	283
NlaIII	CATG	2 cut(s)	64, 155
NlaIV	GGNNCC	1 cut(s)	304
NmuCI	GTSAC	2 cut(s)	320, 358
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
PspEI	GGTNACC	1 cut(s)	188
PspFI	CCCAGC	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	304
RsaI	GTAC	3 cut(s)	16, 112, 259
RsaNI	GTAC	3 cut(s)	15, 111, 258
SaqAI	TTAA	1 cut(s)	167
Sau3AI	GATC	2 cut(s)	94, 136
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	1 cut(s)	18
SetI	ASST	3 cut(s)	130, 308, 343
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
SpeI	ACTAGT	1 cut(s)	266
Sse9I	AATT	1 cut(s)	175
SspMI	CTAG	3 cut(s)	267, 284, 370
TaaI	ACNGT	3 cut(s)	115, 236, 364
TasI	AATT	1 cut(s)	175
TatI	WGTACW	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TscAI	CASTG	3 cut(s)	220, 335, 367
TseFI	GTSAC	2 cut(s)	320, 358
Tsp45I	GTSAC	2 cut(s)	320, 358
TspDTI	ATGAA	1 cut(s)	231
TspRI	CASTG	3 cut(s)	220, 335, 367
XspI	CTAG	3 cut(s)	267, 284, 370
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.