FvH4_7g13300

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001428
Physical Location & Seq
Reverse (-)
11972801 .. 11978512
5712 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13300.t1

Sequence Viewer

Length: 1443 bp
ATGCCGAAGCCAACTGAGGACATGATCCAGACCTACATCAGCCTCACCGGCGCGTCTCACTCACTCGCCCTCCTCAAGCTCGAGGAACATGGAGGCGATCTTAATGAAGCCGTGAATGAACATTTTAGGGAAGGAGATGTTCACAGTACAAGTCCTTCATCGACTGCTCCCCCACAGTACAATTTCGCTCAAGTGAGTAATCAGAATCAAGTAGCACCACAACAAGGACTTCTGCCACTTCTCTCTGTTGCTAGGAGTTTCAAGCCGTCCTTATTACTTGACCGTAATTACAGTAGAGATCTCTACAATCGGATTGGTTCTGCATTAACTGGTCGGGCACCATCACCTTCACACCCAGGAGAGGTGACTGGGGTTCCTGTAGGTCTTAGTCCAGGGAATGAGCAGCCTCATGTCTCAGGACAGAGGCCTACTATTCCGGATGTGGCCAAAACTGAGTTGGATGCCTCAAGATATGGCAATGATGTTGAGGAAGAAATGATTCAGGCTGCTATTGAAGCTTCAAAACGAGAAGCTGAAAGGGGTTCTCCAAATGTGCATAACAGGAATCTCAATGTATTTCCTGGTAATGGGTCTCTGGATGAGAAAATACCTGAAGAAAATTCAGATATTGACCGTGCAGTTTTGCTGTCCTTGAAGTCAGTTCAGACAGCAGAACAAGAGAAAGCAATGCGTGAGATGCAACTGAATGACTGGAATCAAGTTCCAGGAGTTTATAGTCCATGGAAGCAAGGAACGTCATCACACCAAAATGGAGCTGAAGTTGTAGAAGAGCAATTAGTTAGTGAAGAGTCTAAGCGCAATGATGGTAATCATCTTCAGCAGGGAAAATTGGGAAGTCACTATGATGAGTTGGGCAGCTTATCTCCCAAAGAGCTTGATGAAGCTATAATGCTGGAGAATGCACATTTTGGTGGATCTTCATACACTCCTAACATTCAGCCTGTACATGGCTCTTCCTCGTCCTCTCTATCAGCGACGCAATTGCTCAGAGAACAACAGGATGAGAACTATCTTGCATCCCTCATAGCCGATAAAGAGAAAGAAATGAATGCTGTCCATGAAGCTGCAACTTGTCAATTGAAGGGAGATGCCAACAAAAGAATCGAGCCAATGGAATCTGAGAGAAGGCTAGCTGCAAAAACTGCTTCACTTCCTTCTGAACCAGCAGCAGACGACGAGAATGCTGTGACTCTTCTTGTTCGGATGCCAAATGGCAGCCGCCTCAGCCATCGCTTCCGCAAATCTGACAAGCTTCAGCTTCTTTTTGACTTCATAGATGTCAGTAGCGTGGTGGAGCCTGGAACTTACAGAGTGGTCAGGTCATATCCTCGACATGCTTTCACCACCAAAAACAGCTTATTAACATTAAGAGAACTCGGCCTGACCAACAAGCAAGAAGCGCTGTTTTTGGAACTGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

481

Amino Acids

52.81

Weight (kDa)

5.25

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_4 PF14555 6 - 46 6.8e-08 UBA-like domain
UBX PF00789 399 - 478 5e-17 UBX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 337
AccII CGCG 1 cut(s) 53
AccIII TCCGGA 1 cut(s) 436
AciI CCGC 2 cut(s) 1240, 1258
AclWI GGATC 2 cut(s) 19, 943
AcoI YGGCCR 1 cut(s) 444
AcsI RAATTY 1 cut(s) 619
AcuI CTGAAG 4 cut(s) 633, 798, 821, 1259
AfaI GTAC 3 cut(s) 148, 179, 966
AfeI AGCGCT 1 cut(s) 1422
AfiI CCNNNNNNNGG 4 cut(s) 224, 361, 587, 968
AgsI TTSAA 5 cut(s) 262, 515, 522, 655, 1102
AjnI CCWGG 5 cut(s) 355, 391, 580, 724, 1318
Alw26I GTCTC 3 cut(s) 60, 418, 597
AlwI GGATC 2 cut(s) 19, 943
Ama87I CYCGRG 1 cut(s) 80
Aor13HI TCCGGA 1 cut(s) 436
Aor51HI AGCGCT 1 cut(s) 1422
AoxI GGCC 3 cut(s) 425, 444, 1399
ApeKI GCWGC 7 cut(s) 403, 506, 876, 1085, 1154, 1187, 1236
ApoI RAATTY 1 cut(s) 619
Asp700I GAANNNNTTC 1 cut(s) 498
AspLEI GCGC 3 cut(s) 53, 819, 1423
AsuHPI GGTGA 4 cut(s) 37, 336, 376, 1354
AsuNHI GCTAGC 1 cut(s) 1150
AvaI CYCGRG 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 340
BalI TGGCCA 1 cut(s) 446
BanI GGYRCC 1 cut(s) 337
BarI GAAGNNNNNNTAC 2 cut(s) 139, 171
BbvCI CCTCAGC 1 cut(s) 1244
BbvI GCAGC 7 cut(s) 415, 493, 888, 1072, 1141, 1199, 1248
BccI CCATC 3 cut(s) 349, 818, 1257
BceAI ACGGC 2 cut(s) 95, 250
BcgI CGANNNNNNTGC 4 cut(s) 985, 1019, 1184, 1218
BciT130I CCWGG 5 cut(s) 357, 393, 582, 726, 1320
BcoDI GTCTC 3 cut(s) 60, 418, 597
BfaI CTAG 2 cut(s) 252, 1151
BfmI CTRYAG 1 cut(s) 378
BfoI RGCGCY 1 cut(s) 1424
BglI GCCNNNNNGGC 1 cut(s) 48
BglII AGATCT 1 cut(s) 298
BisI GCNGC 8 cut(s) 404, 507, 877, 1086, 1155, 1188, 1237, 1240
BlsI GCNGC 8 cut(s) 405, 508, 878, 1087, 1156, 1189, 1238, 1241
Bme1390I CCNGG 5 cut(s) 357, 393, 582, 726, 1320
BmeT110I CYCGRG 1 cut(s) 80
BmiI GGNNCC 3 cut(s) 339, 375, 1317
BmrFI CCNGG 5 cut(s) 357, 393, 582, 726, 1320
BmrI ACTGGG 1 cut(s) 378
BmsI GCATC 5 cut(s) 451, 687, 1046, 1099, 1215
BmtI GCTAGC 1 cut(s) 1154
BmuI ACTGGG 1 cut(s) 378
BpmI CTGGAG 1 cut(s) 935
Bpu10I CCTNAGC 1 cut(s) 1244
BpuEI CTTGAG 3 cut(s) 59, 174, 451
BsaBI GATNNNNATC 1 cut(s) 828
BsaI GGTCTC 1 cut(s) 597
BsaJI CCNNGG 3 cut(s) 355, 392, 740
BsaWI WCCGGW 1 cut(s) 436
BsaXI ACNNNNNCTCC 4 cut(s) 54, 84, 765, 795
Bsc4I CCNNNNNNNGG 4 cut(s) 224, 361, 587, 968
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 3 cut(s) 334, 373, 716
Bse3DI GCAATG 3 cut(s) 484, 693, 826
Bse8I GATNNNNATC 1 cut(s) 828
BseAI TCCGGA 1 cut(s) 436
BseBI CCWGG 5 cut(s) 357, 393, 582, 726, 1320
BseDI CCNNGG 3 cut(s) 355, 392, 740
BseGI GGATG 6 cut(s) 445, 466, 604, 1027, 1037, 1230
BseJI GATNNNNATC 1 cut(s) 828
BseLI CCNNNNNNNGG 4 cut(s) 224, 361, 587, 968
BseMI GCAATG 3 cut(s) 484, 693, 826
BseMII CTCAG 6 cut(s) 6, 429, 444, 1021, 1131, 1258
BseNI ACTGG 3 cut(s) 334, 373, 716
BseRI GAGGAG 1 cut(s) 62
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 7 cut(s) 415, 493, 888, 1072, 1141, 1199, 1248
BsgI GTGCAG 1 cut(s) 657
Bsh1236I CGCG 1 cut(s) 53
BshFI GGCC 3 cut(s) 427, 446, 1401
BshNI GGYRCC 1 cut(s) 337
BsiHKCI CYCGRG 1 cut(s) 80
BsiSI CCGG 2 cut(s) 48, 437
BslI CCNNNNNNNGG 4 cut(s) 224, 361, 587, 968
BsmAI GTCTC 3 cut(s) 60, 418, 597
BsmBI CGTCTC 1 cut(s) 60
BsmI GAATGC 3 cut(s) 925, 1075, 1207
BsnI GGCC 3 cut(s) 427, 446, 1401
Bso31I GGTCTC 1 cut(s) 597
BsoBI CYCGRG 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 340
Bsp13I TCCGGA 1 cut(s) 436
Bsp1407I TGTACA 1 cut(s) 964
Bsp143I GATC 4 cut(s) 24, 97, 298, 935
Bsp19I CCATGG 1 cut(s) 740
BspACI CCGC 2 cut(s) 1240, 1258
BspANI GGCC 3 cut(s) 427, 446, 1401
BspCNI CTCAG 6 cut(s) 7, 428, 445, 1020, 1132, 1257
BspEI TCCGGA 1 cut(s) 436
BspFNI CGCG 1 cut(s) 53
BspLI GGNNCC 3 cut(s) 339, 375, 1317
BspOI GCTAGC 1 cut(s) 1154
BspPI GGATC 2 cut(s) 19, 943
BspQI GCTCTTC 2 cut(s) 783, 979
BspT107I GGYRCC 1 cut(s) 337
BspTNI GGTCTC 1 cut(s) 597
BsrDI GCAATG 3 cut(s) 484, 693, 826
BsrFI RCCGGY 1 cut(s) 47
BsrGI TGTACA 1 cut(s) 964
BsrI ACTGG 3 cut(s) 334, 373, 716
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 3 cut(s) 355, 392, 740
BssMI GATC 4 cut(s) 24, 97, 298, 935
BssT1I CCWWGG 1 cut(s) 740
Bst2UI CCWGG 5 cut(s) 357, 393, 582, 726, 1320
Bst4CI ACNGT 5 cut(s) 146, 177, 284, 293, 635
Bst6I CTCTTC 4 cut(s) 783, 801, 979, 1218
BstAPI GCANNNNNTGC 1 cut(s) 1163
BstAUI TGTACA 1 cut(s) 964
BstC8I GCNNGC 1 cut(s) 1152
BstDEI CTNAG 8 cut(s) 15, 386, 415, 453, 813, 1007, 1140, 1244
BstDSI CCRYGG 1 cut(s) 740
BstF5I GGATG 6 cut(s) 445, 466, 604, 1027, 1037, 1230
BstFNI CGCG 1 cut(s) 53
BstH2I RGCGCY 1 cut(s) 1424
BstHHI GCGC 3 cut(s) 53, 819, 1423
BstKTI GATC 4 cut(s) 27, 100, 301, 938
BstMAI GTCTC 3 cut(s) 60, 418, 597
BstMBI GATC 4 cut(s) 24, 97, 298, 935
BstMWI GCNNNNNNNGC 6 cut(s) 48, 515, 697, 1163, 1245, 1420
BstNI CCWGG 5 cut(s) 357, 393, 582, 726, 1320
BstNSI RCATGY 1 cut(s) 1358
BstSCI CCNGG 5 cut(s) 355, 391, 580, 724, 1318
BstSFI CTRYAG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 340
BstUI CGCG 1 cut(s) 53
BstV1I GCAGC 7 cut(s) 415, 493, 888, 1072, 1141, 1199, 1248
BstX2I RGATCY 2 cut(s) 298, 935
BstYI RGATCY 2 cut(s) 298, 935
BsuRI GGCC 3 cut(s) 427, 446, 1401
BtgI CCRYGG 1 cut(s) 740
BtgZI GCGATG 1 cut(s) 1235
BtsCI GGATG 6 cut(s) 445, 466, 604, 1027, 1037, 1230
Cac8I GCNNGC 1 cut(s) 1152
CfoI GCGC 3 cut(s) 53, 819, 1423
Cfr10I RCCGGY 1 cut(s) 47
CseI GACGC 2 cut(s) 42, 1006
Csp6I GTAC 3 cut(s) 147, 178, 965
CviAII CATG 7 cut(s) 22, 89, 410, 741, 968, 1079, 1355
CviQI GTAC 3 cut(s) 147, 178, 965
DdeI CTNAG 8 cut(s) 15, 386, 415, 453, 813, 1007, 1140, 1244
DpnI GATC 4 cut(s) 26, 99, 300, 937
DpnII GATC 4 cut(s) 24, 97, 298, 935
EaeI YGGCCR 1 cut(s) 444
Eam1104I CTCTTC 4 cut(s) 783, 801, 979, 1218
EarI CTCTTC 4 cut(s) 783, 801, 979, 1218
Eco130I CCWWGG 1 cut(s) 740
Eco147I AGGCCT 1 cut(s) 427
Eco31I GGTCTC 1 cut(s) 597
Eco47III AGCGCT 1 cut(s) 1422
Eco57I CTGAAG 4 cut(s) 633, 798, 821, 1259
Eco88I CYCGRG 1 cut(s) 80
EcoRII CCWGG 5 cut(s) 355, 391, 580, 724, 1318
EcoT14I CCWWGG 1 cut(s) 740
ErhI CCWWGG 1 cut(s) 740
Esp3I CGTCTC 1 cut(s) 60
FaeI CATG 7 cut(s) 25, 92, 413, 744, 971, 1082, 1358
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FatI CATG 7 cut(s) 21, 88, 409, 740, 967, 1078, 1354
Fnu4HI GCNGC 8 cut(s) 404, 507, 877, 1086, 1155, 1188, 1237, 1240
FokI GGATG 6 cut(s) 452, 473, 611, 1024, 1034, 1237
Fsp4HI GCNGC 8 cut(s) 404, 507, 877, 1086, 1155, 1188, 1237, 1240
FspBI CTAG 2 cut(s) 252, 1151
GlaI GCGC 3 cut(s) 52, 818, 1422
GluI GCNGC 8 cut(s) 404, 507, 877, 1086, 1155, 1188, 1237, 1240
GsuI CTGGAG 1 cut(s) 935
HaeII RGCGCY 1 cut(s) 1424
HaeIII GGCC 3 cut(s) 427, 446, 1401
HapII CCGG 2 cut(s) 48, 437
HgaI GACGC 2 cut(s) 42, 1006
HhaI GCGC 3 cut(s) 53, 819, 1423
Hin1II CATG 7 cut(s) 25, 92, 413, 744, 971, 1082, 1358
Hin6I GCGC 3 cut(s) 51, 817, 1421
HinP1I GCGC 3 cut(s) 51, 817, 1421
HindIII AAGCTT 2 cut(s) 516, 1271
HinfI GANTC 8 cut(s) 205, 499, 565, 715, 809, 1122, 1136, 1210
HpaII CCGG 2 cut(s) 48, 437
HphI GGTGA 4 cut(s) 37, 336, 376, 1354
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 9 cut(s) 204, 312, 625, 666, 1010, 1141, 1180, 1224, 1267
Hpy188III TCNNGA 5 cut(s) 28, 417, 437, 468, 596
Hpy8I GTNNAC 1 cut(s) 142
Hpy99I CGWCG 2 cut(s) 1000, 1199
HpyAV CCTTC 6 cut(s) 125, 165, 357, 1096, 1140, 1185
HpyCH4III ACNGT 5 cut(s) 146, 177, 284, 293, 635
HpyCH4IV ACGT 1 cut(s) 755
HpyCH4V TGCA 8 cut(s) 323, 556, 638, 700, 923, 1037, 1088, 1157
HpyF10VI GCNNNNNNNGC 6 cut(s) 48, 515, 697, 1163, 1245, 1420
HpyF3I CTNAG 8 cut(s) 15, 386, 415, 453, 813, 1007, 1140, 1244
HpySE526I ACGT 1 cut(s) 755
Hsp92II CATG 7 cut(s) 25, 92, 413, 744, 971, 1082, 1358
HspAI GCGC 3 cut(s) 51, 817, 1421
Kpn2I TCCGGA 1 cut(s) 436
Kzo9I GATC 4 cut(s) 24, 97, 298, 935
LguI GCTCTTC 2 cut(s) 783, 979
LmnI GCTCC 3 cut(s) 172, 773, 1315
Lsp1109I GCAGC 7 cut(s) 415, 493, 888, 1072, 1141, 1199, 1248
LweI GCATC 5 cut(s) 451, 687, 1046, 1099, 1215
MaeI CTAG 2 cut(s) 252, 1151
MaeII ACGT 1 cut(s) 755
MaeIII GTNAC 3 cut(s) 364, 857, 1207
MalI GATC 4 cut(s) 26, 99, 300, 937
MboI GATC 4 cut(s) 24, 97, 298, 935
MboII GAAGA 8 cut(s) 503, 626, 800, 818, 827, 930, 966, 1205
MfeI CAATTG 2 cut(s) 1001, 1097
MflI RGATCY 2 cut(s) 298, 935
MhlI GDGCHC 1 cut(s) 340
MlsI TGGCCA 1 cut(s) 446
MluCI AATT 7 cut(s) 181, 286, 619, 794, 848, 1001, 1097
MluNI TGGCCA 1 cut(s) 446
MlyI GAGTC 2 cut(s) 818, 1204
MmeI TCCRAC 1 cut(s) 438
Mox20I TGGCCA 1 cut(s) 446
MroI TCCGGA 1 cut(s) 436
MroXI GAANNNNTTC 1 cut(s) 498
MscI TGGCCA 1 cut(s) 446
MseI TTAA 4 cut(s) 102, 326, 1382, 1388
MslI CAYNNNNRTG 3 cut(s) 768, 864, 930
Msp20I TGGCCA 1 cut(s) 446
MspI CCGG 2 cut(s) 48, 437
MspR9I CCNGG 5 cut(s) 357, 393, 582, 726, 1320
MunI CAATTG 2 cut(s) 1001, 1097
Mva1269I GAATGC 3 cut(s) 925, 1075, 1207
MvaI CCWGG 5 cut(s) 357, 393, 582, 726, 1320
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 6 cut(s) 48, 515, 697, 1163, 1245, 1420
NcoI CCATGG 1 cut(s) 740
NdeII GATC 4 cut(s) 24, 97, 298, 935
NheI GCTAGC 1 cut(s) 1150
NlaIII CATG 7 cut(s) 25, 92, 413, 744, 971, 1082, 1358
NlaIV GGNNCC 3 cut(s) 339, 375, 1317
NmeAIII GCCGAG 1 cut(s) 1377
NmuCI GTSAC 3 cut(s) 364, 857, 1207
NspI RCATGY 1 cut(s) 1358
PaeR7I CTCGAG 1 cut(s) 80
PceI AGGCCT 1 cut(s) 427
PciSI GCTCTTC 2 cut(s) 783, 979
PctI GAATGC 3 cut(s) 925, 1075, 1207
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 6 cut(s) 205, 499, 565, 715, 1122, 1136
PfoI TCCNGGA 1 cut(s) 724
PkrI GCNGC 8 cut(s) 405, 508, 878, 1087, 1156, 1189, 1238, 1241
PleI GAGTC 2 cut(s) 817, 1204
PpsI GAGTC 2 cut(s) 817, 1204
Psp6I CCWGG 5 cut(s) 355, 391, 580, 724, 1318
PspGI CCWGG 5 cut(s) 355, 391, 580, 724, 1318
PspN4I GGNNCC 3 cut(s) 339, 375, 1317
PspXI VCTCGAGB 1 cut(s) 80
PsuI RGATCY 2 cut(s) 298, 935
RsaI GTAC 3 cut(s) 148, 179, 966
RsaNI GTAC 3 cut(s) 147, 178, 965
RseI CAYNNNNRTG 3 cut(s) 768, 864, 930
SapI GCTCTTC 2 cut(s) 783, 979
SaqAI TTAA 4 cut(s) 102, 326, 1382, 1388
SatI GCNGC 8 cut(s) 404, 507, 877, 1086, 1155, 1188, 1237, 1240
Sau3AI GATC 4 cut(s) 24, 97, 298, 935
SchI GAGTC 2 cut(s) 818, 1204
ScrFI CCNGG 5 cut(s) 357, 393, 582, 726, 1320
SduI GDGCHC 1 cut(s) 340
SfaNI GCATC 5 cut(s) 451, 687, 1046, 1099, 1215
SfcI CTRYAG 1 cut(s) 378
Sfr274I CTCGAG 1 cut(s) 80
SgrAI CRCCGGYG 1 cut(s) 47
SlaI CTCGAG 1 cut(s) 80
SmiMI CAYNNNNRTG 3 cut(s) 768, 864, 930
SmlI CTYRAG 4 cut(s) 74, 80, 189, 466
SmoI CTYRAG 4 cut(s) 74, 80, 189, 466
Sse9I AATT 7 cut(s) 181, 286, 619, 794, 848, 1001, 1097
SseBI AGGCCT 1 cut(s) 427
SsiI CCGC 2 cut(s) 1240, 1258
SspMI CTAG 2 cut(s) 252, 1151
StuI AGGCCT 1 cut(s) 427
StyD4I CCNGG 5 cut(s) 355, 391, 580, 724, 1318
StyI CCWWGG 1 cut(s) 740
TaaI ACNGT 5 cut(s) 146, 177, 284, 293, 635
TaiI ACGT 1 cut(s) 758
TaqI TCGA 4 cut(s) 81, 161, 1125, 1351
TasI AATT 7 cut(s) 181, 286, 619, 794, 848, 1001, 1097
TatI WGTACW 3 cut(s) 146, 177, 964
TauI GCSGC 1 cut(s) 1242
TfiI GAWTC 6 cut(s) 205, 499, 565, 715, 1122, 1136
Tru1I TTAA 4 cut(s) 102, 326, 1382, 1388
Tru9I TTAA 4 cut(s) 102, 326, 1382, 1388
TseFI GTSAC 3 cut(s) 364, 857, 1207
TseI GCWGC 7 cut(s) 403, 506, 876, 1085, 1154, 1187, 1236
Tsp45I GTSAC 3 cut(s) 364, 857, 1207
TspDTI ATGAA 8 cut(s) 120, 132, 147, 915, 930, 1082, 1095, 1282
XapI RAATTY 1 cut(s) 619
XceI RCATGY 1 cut(s) 1358
XcmI CCANNNNNNNNNTGG 1 cut(s) 454
XhoI CTCGAG 1 cut(s) 80
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 2 cut(s) 252, 1151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.