Rw7G038890

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001428
Physical Location & Seq
Forward (+)
59494066 .. 59502668
8603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G038890.1

Sequence Viewer

Length: 936 bp
ATGTCAATCTATTTTCTTTACATAATACGTTCTTGCATTCAACTGATTGGGCTCTCTCTCAATGAGTACATTGACGCAGCTATGAGACATGTTCTCCTTAGGCAGGAAGCTGAAATGGGTTCTCCGAATGTGCGAAACAGTACTCCCAATGAATCTCCTGGTAATGGGCTTCCGGTTGAGAAAATTCCTGAAGAAAATTCAGATTTTGATCGTGCAGTTTCGTTGTCCTTGAAGACAGCAGAACAAGAGAAAGCAATACGTGATATGCAGCTGAACGACACGAATCAAGATCCAGGAGTTTATAGTACACGGAAGGAATTAAGGTCATCACAGCAAAATGGAGCTGAAGTTGTAGAGCAGCAATTAGTTAGTGAAGAGTCTAAGCGTGATGGTGGTAGTCATCTTCAGCAGGGAAAACTGGTAGCTCACAGTGATGTGACTAGTCAAATTTATCACATATATACTTGTAGTTGGGAAGCTTATCTCCAAAAGAGCTTGACGAAGCAATTATGCTTGAGACTGCACTTTTTGGTAAATCTCCATACACCTAATAATCTGCCTATACATGCCTCTTCCTCATCCTCTCTATCAGCAAGGCAATTGCTCAGAGAACAACATGATGATGAGTATCTTGCATCCCACTTAGCTGATAAAGAGAAAGAAATGAATGTTGTCCATGAAGCTGCAACTTGTCAGTTGAAGGGAGATGTCAACAAAAGAATCGAGCCAATGAATGCTGTGACTCTTCTTGTTCGGATGCCAAATGGCAGCCGCCTTAGCCGTCACTTTCGCAAATCTGACAGGCTTCAGACTACTGTTGTTCACTTGTTCGTAGAGGTAAGAAGAATTTTTTTTTTTTCTTTCTCCTCTTTAAGTTTTTATTTTATTTTATTTGTTTATAACTCATGTAAACAACAAGCGGTGTATAGCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

311

Amino Acids

35.51

Weight (kDa)

6.87

Isoelectric Point (pI)

51.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 900
AciI CCGC 2 cut(s) 772, 920
AclWI GGATC 1 cut(s) 284
AcsI RAATTY 4 cut(s) 183, 196, 447, 846
AcuI CTGAAG 4 cut(s) 210, 366, 389, 791
AfaI GTAC 3 cut(s) 68, 142, 307
AfiI CCNNNNNNNGG 2 cut(s) 103, 164
AflIII ACRYGT 1 cut(s) 88
AgsI TTSAA 3 cut(s) 41, 232, 700
AhlI ACTAGT 1 cut(s) 440
AjnI CCWGG 2 cut(s) 157, 292
Alw26I GTCTC 2 cut(s) 79, 511
AlwI GGATC 1 cut(s) 284
ApeKI GCWGC 5 cut(s) 77, 268, 358, 683, 768
ApoI RAATTY 4 cut(s) 183, 196, 447, 846
AxyI CCTNAGG 1 cut(s) 98
BanII GRGCYC 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 239
BbvI GCAGC 5 cut(s) 89, 280, 370, 670, 780
BccI CCATC 1 cut(s) 383
BceAI ACGGC 1 cut(s) 765
BciT130I CCWGG 2 cut(s) 159, 294
BcoDI GTCTC 2 cut(s) 79, 511
BcuI ACTAGT 1 cut(s) 440
BfaI CTAG 1 cut(s) 441
BisI GCNGC 6 cut(s) 78, 269, 359, 684, 769, 772
BlsI GCNGC 6 cut(s) 79, 270, 360, 685, 770, 773
BmcAI AGTACT 1 cut(s) 142
Bme1390I CCNGG 2 cut(s) 159, 294
BmrFI CCNGG 2 cut(s) 159, 294
BmsI GCATC 2 cut(s) 644, 747
BpiI GAAGAC 1 cut(s) 239
Bpu10I CCTNAGC 1 cut(s) 776
BpuEI CTTGAG 1 cut(s) 535
BsaAI YACGTR 1 cut(s) 260
BsaBI GATNNNNATC 2 cut(s) 207, 627
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 4 cut(s) 78, 108, 333, 363
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 164
Bse1I ACTGG 1 cut(s) 423
Bse21I CCTNAGG 1 cut(s) 98
Bse8I GATNNNNATC 2 cut(s) 207, 627
BseBI CCWGG 2 cut(s) 159, 294
BseGI GGATG 3 cut(s) 578, 635, 762
BseJI GATNNNNATC 2 cut(s) 207, 627
BseLI CCNNNNNNNGG 2 cut(s) 103, 164
BseMII CTCAG 1 cut(s) 619
BseNI ACTGG 1 cut(s) 423
BseRI GAGGAG 1 cut(s) 856
BseXI GCAGC 5 cut(s) 89, 280, 370, 670, 780
BsgI GTGCAG 2 cut(s) 234, 506
BsiSI CCGG 1 cut(s) 173
BslI CCNNNNNNNGG 2 cut(s) 103, 164
BsmAI GTCTC 2 cut(s) 79, 511
BsmI GAATGC 2 cut(s) 36, 739
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 2 cut(s) 208, 289
BspACI CCGC 2 cut(s) 772, 920
BspCNI CTCAG 1 cut(s) 618
BspPI GGATC 1 cut(s) 284
BsrI ACTGG 1 cut(s) 423
BssMI GATC 2 cut(s) 208, 289
Bst2UI CCWGG 2 cut(s) 159, 294
Bst4CI ACNGT 3 cut(s) 140, 431, 817
Bst6I CTCTTC 3 cut(s) 369, 577, 750
BstBAI YACGTR 1 cut(s) 260
BstDEI CTNAG 5 cut(s) 98, 381, 605, 643, 776
BstENI CCTNNNNNAGG 1 cut(s) 101
BstF5I GGATG 3 cut(s) 578, 635, 762
BstKTI GATC 2 cut(s) 211, 292
BstMAI GTCTC 2 cut(s) 79, 511
BstMBI GATC 2 cut(s) 208, 289
BstMWI GCNNNNNNNGC 1 cut(s) 777
BstNI CCWGG 2 cut(s) 159, 294
BstNSI RCATGY 2 cut(s) 92, 569
BstSCI CCNGG 2 cut(s) 157, 292
BstV1I GCAGC 5 cut(s) 89, 280, 370, 670, 780
BstV2I GAAGAC 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
Bsu36I CCTNAGG 1 cut(s) 98
BtsCI GGATG 3 cut(s) 578, 635, 762
BtsIMutI CAGTG 1 cut(s) 436
CseI GACGC 1 cut(s) 83
Csp6I GTAC 3 cut(s) 67, 141, 306
CviAII CATG 5 cut(s) 89, 566, 617, 677, 906
CviQI GTAC 3 cut(s) 67, 141, 306
DdeI CTNAG 5 cut(s) 98, 381, 605, 643, 776
DpnI GATC 2 cut(s) 210, 291
DpnII GATC 2 cut(s) 208, 289
Eam1104I CTCTTC 3 cut(s) 369, 577, 750
EarI CTCTTC 3 cut(s) 369, 577, 750
Eco24I GRGCYC 1 cut(s) 54
Eco57I CTGAAG 4 cut(s) 210, 366, 389, 791
Eco81I CCTNAGG 1 cut(s) 98
EcoNI CCTNNNNNAGG 1 cut(s) 101
EcoRII CCWGG 2 cut(s) 157, 292
EcoT38I GRGCYC 1 cut(s) 54
FaeI CATG 5 cut(s) 92, 569, 620, 680, 909
FatI CATG 5 cut(s) 88, 565, 616, 676, 905
Fnu4HI GCNGC 6 cut(s) 78, 269, 359, 684, 769, 772
FokI GGATG 3 cut(s) 565, 622, 769
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 6 cut(s) 78, 269, 359, 684, 769, 772
FspBI CTAG 1 cut(s) 441
GluI GCNGC 6 cut(s) 78, 269, 359, 684, 769, 772
HapII CCGG 1 cut(s) 173
HgaI GACGC 1 cut(s) 83
Hin1II CATG 5 cut(s) 92, 569, 620, 680, 909
HincII GTYRAC 1 cut(s) 712
HindII GTYRAC 1 cut(s) 712
HindIII AAGCTT 1 cut(s) 477
HinfI GANTC 5 cut(s) 152, 283, 377, 720, 742
HpaII CCGG 1 cut(s) 173
Hpy166II GTNNAC 4 cut(s) 308, 712, 823, 911
Hpy188I TCNGA 6 cut(s) 126, 202, 608, 756, 799, 810
Hpy188III TCNNGA 2 cut(s) 188, 287
Hpy8I GTNNAC 4 cut(s) 308, 712, 823, 911
HpyAV CCTTC 2 cut(s) 307, 694
HpyCH4III ACNGT 3 cut(s) 140, 431, 817
HpyCH4IV ACGT 2 cut(s) 28, 259
HpyCH4V TGCA 6 cut(s) 36, 215, 268, 523, 635, 686
HpyF10VI GCNNNNNNNGC 1 cut(s) 777
HpyF3I CTNAG 5 cut(s) 98, 381, 605, 643, 776
HpySE526I ACGT 2 cut(s) 28, 259
Hsp92II CATG 5 cut(s) 92, 569, 620, 680, 909
Kzo9I GATC 2 cut(s) 208, 289
LmnI GCTCC 1 cut(s) 341
Lsp1109I GCAGC 5 cut(s) 89, 280, 370, 670, 780
LweI GCATC 2 cut(s) 644, 747
MaeI CTAG 1 cut(s) 441
MaeII ACGT 2 cut(s) 28, 259
MaeIII GTNAC 3 cut(s) 436, 739, 782
MalI GATC 2 cut(s) 210, 291
MboI GATC 2 cut(s) 208, 289
MboII GAAGA 7 cut(s) 203, 244, 386, 395, 564, 737, 855
MfeI CAATTG 1 cut(s) 599
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 8 cut(s) 183, 196, 317, 362, 447, 506, 599, 846
MlyI GAGTC 2 cut(s) 386, 736
MnlI CCTC 5 cut(s) 580, 586, 592, 829, 877
MseI TTAA 2 cut(s) 320, 872
MslI CAYNNNNRTG 2 cut(s) 432, 621
MspA1I CMGCKG 1 cut(s) 271
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 2 cut(s) 159, 294
MunI CAATTG 1 cut(s) 599
Mva1269I GAATGC 2 cut(s) 36, 739
MvaI CCWGG 2 cut(s) 159, 294
MwoI GCNNNNNNNGC 1 cut(s) 777
NdeII GATC 2 cut(s) 208, 289
NlaIII CATG 5 cut(s) 92, 569, 620, 680, 909
NmuCI GTSAC 3 cut(s) 436, 739, 782
NspI RCATGY 2 cut(s) 92, 569
PciI ACATGT 1 cut(s) 88
PctI GAATGC 2 cut(s) 36, 739
PfeI GAWTC 3 cut(s) 152, 283, 720
PfoI TCCNGGA 1 cut(s) 292
PkrI GCNGC 6 cut(s) 79, 270, 360, 685, 770, 773
PleI GAGTC 2 cut(s) 385, 736
PpsI GAGTC 2 cut(s) 385, 736
Ppu21I YACGTR 1 cut(s) 260
PscI ACATGT 1 cut(s) 88
PsiI TTATAA 1 cut(s) 900
Psp6I CCWGG 2 cut(s) 157, 292
PspGI CCWGG 2 cut(s) 157, 292
PsuI RGATCY 1 cut(s) 289
PvuII CAGCTG 1 cut(s) 271
RsaI GTAC 3 cut(s) 68, 142, 307
RsaNI GTAC 3 cut(s) 67, 141, 306
RseI CAYNNNNRTG 2 cut(s) 432, 621
SaqAI TTAA 2 cut(s) 320, 872
SatI GCNGC 6 cut(s) 78, 269, 359, 684, 769, 772
Sau3AI GATC 2 cut(s) 208, 289
ScaI AGTACT 1 cut(s) 142
SchI GAGTC 2 cut(s) 386, 736
ScrFI CCNGG 2 cut(s) 159, 294
SduI GDGCHC 1 cut(s) 54
SfaNI GCATC 2 cut(s) 644, 747
SmiMI CAYNNNNRTG 2 cut(s) 432, 621
SmlI CTYRAG 1 cut(s) 514
SmoI CTYRAG 1 cut(s) 514
SpeI ACTAGT 1 cut(s) 440
Sse9I AATT 8 cut(s) 183, 196, 317, 362, 447, 506, 599, 846
SsiI CCGC 2 cut(s) 772, 920
SspMI CTAG 1 cut(s) 441
StyD4I CCNGG 2 cut(s) 157, 292
TaaI ACNGT 3 cut(s) 140, 431, 817
TaiI ACGT 2 cut(s) 31, 262
TaqI TCGA 1 cut(s) 723
TasI AATT 8 cut(s) 183, 196, 317, 362, 447, 506, 599, 846
TatI WGTACW 3 cut(s) 66, 140, 305
TauI GCSGC 1 cut(s) 774
TfiI GAWTC 3 cut(s) 152, 283, 720
Tru1I TTAA 2 cut(s) 320, 872
Tru9I TTAA 2 cut(s) 320, 872
TscAI CASTG 1 cut(s) 436
TseFI GTSAC 3 cut(s) 436, 739, 782
TseI GCWGC 5 cut(s) 77, 268, 358, 683, 768
Tsp45I GTSAC 3 cut(s) 436, 739, 782
TspDTI ATGAA 4 cut(s) 165, 680, 693, 746
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 1 cut(s) 436
XagI CCTNNNNNAGG 1 cut(s) 101
XapI RAATTY 4 cut(s) 183, 196, 447, 846
XceI RCATGY 2 cut(s) 92, 569
XspI CTAG 1 cut(s) 441
ZrmI AGTACT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.