RchiOBHm_Chr4g0427171

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001428
Physical Location & Seq
Forward (+)
52460809 .. 52463492
2684 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39612

Sequence Viewer

Length: 954 bp
ATGGAAGTTTTGGGTATAGAAGTTTGGGTAAACATAGACGTCCTCAAGTTTGGTTCTATTTCTGGTTCGATTTCGAATTCTTCAAGCTTGGAACATGGAGGCGATCTCAATGAAGCCGTGAATGCACATTTTAGGGAAGGAGATGTACACAGTACAAGTCCTTCATCTACTGCTCCCCCACAGTACAATTTCCCTCAAATGAGTAATCGGAATCAAGTAGCTCCACAACAAGGACTTCTGCCACTTCTCTCTGTTGCCAGGAGTTTCAAGCCTTCATTACTACTTGACCGTAGTTACAGTAGAGATCTCTACAATCGGATTGGTTCTGCATTAACTGGTTGGGCACCATCACCTTCACACCCAGGAGAGGTAACTGGGGTTCCTGTAGGTTTCAATGCCAGCAATGAGCAGCCTTATCTCTCAGGACAGAGGCCTACAATTCCGGATGTGGCAAGAACTGACTTGGACGCCTCAAGATATGGCAATGATGTGGAGGAAGAAATGATTCAAGCTGCTATTGAAGTTTCAAAACGAGAAGCTGAAATGGGTTCTCCGAATGTGCAAAACAGTACTCCCAATGTATCTCCTGGTAATGGGCTTCCGGTTGAGAAAATTCCTGAAGAAAATTCAGATTTTGATCGTGCAGTTTTGTTGTCCTTGAAGACAGCAGAACAAGAGAAAGCAATACGTGAGATGCAGCTGAACGACAGGAATCAAGATCCAGGAGTTTATAGTACATGGAAGCAAGGAAGGTCATCACAGCAAAATGGAGCTGAAGTTGTAGAGCAGCAATTAGTTAGTGAAGAGTCTAAGCGTGATGGTGGTAGTCATCTTCAGCAGGGAAAACTGGCAACTCACAGTGATGAGTTGGGAAGCTTATCTCCAAAAGAGCTTGACGAAGCAATTATGCTTGAGACTGCACTTTTTGGTAAATTTCCATACACTTTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

317

Amino Acids

34.62

Weight (kDa)

4.77

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 42
AccB1I GGYRCC 1 cut(s) 343
AccIII TCCGGA 1 cut(s) 442
AclWI GGATC 1 cut(s) 713
AcsI RAATTY 4 cut(s) 76, 612, 625, 932
AcuI CTGAAG 3 cut(s) 639, 795, 818
AcyI GRCGYC 2 cut(s) 39, 468
AfaI GTAC 5 cut(s) 147, 154, 185, 571, 736
AfiI CCNNNNNNNGG 3 cut(s) 230, 367, 593
AgsI TTSAA 7 cut(s) 84, 268, 394, 509, 521, 528, 661
AjnI CCWGG 4 cut(s) 257, 361, 586, 721
AluBI AGCT 8 cut(s) 87, 221, 512, 539, 700, 773, 876, 892
AluI AGCT 8 cut(s) 87, 221, 512, 539, 700, 773, 876, 892
Alw26I GTCTC 1 cut(s) 908
AlwI GGATC 1 cut(s) 713
Aor13HI TCCGGA 1 cut(s) 442
AoxI GGCC 1 cut(s) 431
ApeKI GCWGC 4 cut(s) 409, 512, 697, 787
ApoI RAATTY 4 cut(s) 76, 612, 625, 932
Asp700I GAANNNNTTC 1 cut(s) 504
AsuHPI GGTGA 1 cut(s) 342
AsuII TTCGAA 1 cut(s) 74
BaeGI GKGCMC 1 cut(s) 346
BanI GGYRCC 1 cut(s) 343
BarI GAAGNNNNNNTAC 4 cut(s) 129, 145, 161, 177
BbsI GAAGAC 1 cut(s) 668
BbvI GCAGC 4 cut(s) 421, 499, 709, 799
BccI CCATC 2 cut(s) 355, 812
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 4 cut(s) 259, 363, 588, 723
BcoDI GTCTC 1 cut(s) 908
BfmI CTRYAG 1 cut(s) 384
BglII AGATCT 1 cut(s) 304
BisI GCNGC 4 cut(s) 410, 513, 698, 788
BlsI GCNGC 4 cut(s) 411, 514, 699, 789
BmcAI AGTACT 1 cut(s) 571
Bme1390I CCNGG 4 cut(s) 259, 363, 588, 723
BmiI GGNNCC 2 cut(s) 345, 381
BmrFI CCNGG 4 cut(s) 259, 363, 588, 723
BmrI ACTGGG 1 cut(s) 384
BmsI GCATC 1 cut(s) 684
BmuI ACTGGG 1 cut(s) 384
BpiI GAAGAC 1 cut(s) 668
BplI GAGNNNNNCTC 2 cut(s) 90, 122
Bpu14I TTCGAA 1 cut(s) 74
BpuEI CTTGAG 3 cut(s) 29, 457, 932
BsaAI YACGTR 1 cut(s) 689
BsaBI GATNNNNATC 1 cut(s) 636
BsaHI GRCGYC 2 cut(s) 39, 468
BsaJI CCNNGG 1 cut(s) 361
BsaWI WCCGGW 2 cut(s) 442, 601
BsaXI ACNNNNNCTCC 2 cut(s) 762, 792
Bsc4I CCNNNNNNNGG 3 cut(s) 230, 367, 593
Bse1I ACTGG 3 cut(s) 340, 379, 852
Bse3DI GCAATG 2 cut(s) 409, 490
Bse8I GATNNNNATC 1 cut(s) 636
BseAI TCCGGA 1 cut(s) 442
BseBI CCWGG 4 cut(s) 259, 363, 588, 723
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 1 cut(s) 451
BseJI GATNNNNATC 1 cut(s) 636
BseLI CCNNNNNNNGG 3 cut(s) 230, 367, 593
BseMI GCAATG 2 cut(s) 409, 490
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 3 cut(s) 340, 379, 852
BseSI GKGCMC 1 cut(s) 346
BseXI GCAGC 4 cut(s) 421, 499, 709, 799
BsgI GTGCAG 2 cut(s) 663, 903
BshFI GGCC 1 cut(s) 433
BshNI GGYRCC 1 cut(s) 343
BsiSI CCGG 2 cut(s) 443, 602
BslI CCNNNNNNNGG 3 cut(s) 230, 367, 593
BsmAI GTCTC 1 cut(s) 908
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 1 cut(s) 433
Bsp119I TTCGAA 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 346
Bsp13I TCCGGA 1 cut(s) 442
Bsp1407I TGTACA 1 cut(s) 145
Bsp143I GATC 4 cut(s) 103, 304, 637, 718
BspANI GGCC 1 cut(s) 433
BspCNI CTCAG 1 cut(s) 434
BspEI TCCGGA 1 cut(s) 442
BspLI GGNNCC 2 cut(s) 345, 381
BspPI GGATC 1 cut(s) 713
BspT104I TTCGAA 1 cut(s) 74
BspT107I GGYRCC 1 cut(s) 343
BsrDI GCAATG 2 cut(s) 409, 490
BsrGI TGTACA 1 cut(s) 145
BsrI ACTGG 3 cut(s) 340, 379, 852
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 4 cut(s) 103, 304, 637, 718
BssNI GRCGYC 2 cut(s) 39, 468
Bst2UI CCWGG 4 cut(s) 259, 363, 588, 723
Bst4CI ACNGT 6 cut(s) 152, 183, 290, 299, 569, 860
Bst6I CTCTTC 1 cut(s) 798
BstACI GRCGYC 2 cut(s) 39, 468
BstAUI TGTACA 1 cut(s) 145
BstBAI YACGTR 1 cut(s) 689
BstBI TTCGAA 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 400
BstDEI CTNAG 2 cut(s) 421, 810
BstF5I GGATG 1 cut(s) 451
BstKTI GATC 4 cut(s) 106, 307, 640, 721
BstMAI GTCTC 1 cut(s) 908
BstMBI GATC 4 cut(s) 103, 304, 637, 718
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 4 cut(s) 259, 363, 588, 723
BstSCI CCNGG 4 cut(s) 257, 361, 586, 721
BstSFI CTRYAG 1 cut(s) 384
BstSLI GKGCMC 1 cut(s) 346
BstV1I GCAGC 4 cut(s) 421, 499, 709, 799
BstV2I GAAGAC 1 cut(s) 668
BstX2I RGATCY 2 cut(s) 304, 718
BstYI RGATCY 2 cut(s) 304, 718
BsuRI GGCC 1 cut(s) 433
BtsCI GGATG 1 cut(s) 451
BtsIMutI CAGTG 1 cut(s) 865
Cac8I GCNNGC 1 cut(s) 400
CseI GACGC 1 cut(s) 476
Csp6I GTAC 5 cut(s) 146, 153, 184, 570, 735
CviAII CATG 2 cut(s) 95, 738
CviQI GTAC 5 cut(s) 146, 153, 184, 570, 735
DdeI CTNAG 2 cut(s) 421, 810
DpnI GATC 4 cut(s) 105, 306, 639, 720
DpnII GATC 4 cut(s) 103, 304, 637, 718
Eam1104I CTCTTC 1 cut(s) 798
EarI CTCTTC 1 cut(s) 798
Eco147I AGGCCT 1 cut(s) 433
Eco57I CTGAAG 3 cut(s) 639, 795, 818
EcoRI GAATTC 1 cut(s) 76
EcoRII CCWGG 4 cut(s) 257, 361, 586, 721
FaeI CATG 2 cut(s) 98, 741
FaiI YATR 8 cut(s) 17, 35, 96, 480, 732, 739, 908, 940
FatI CATG 2 cut(s) 94, 737
Fnu4HI GCNGC 4 cut(s) 410, 513, 698, 788
FokI GGATG 1 cut(s) 458
Fsp4HI GCNGC 4 cut(s) 410, 513, 698, 788
GluI GCNGC 4 cut(s) 410, 513, 698, 788
HaeIII GGCC 1 cut(s) 433
HapII CCGG 2 cut(s) 443, 602
HgaI GACGC 1 cut(s) 476
Hin1I GRCGYC 2 cut(s) 39, 468
Hin1II CATG 2 cut(s) 98, 741
HindIII AAGCTT 2 cut(s) 85, 874
HinfI GANTC 4 cut(s) 211, 505, 712, 806
HpaII CCGG 2 cut(s) 443, 602
HphI GGTGA 1 cut(s) 342
Hpy166II GTNNAC 2 cut(s) 31, 148
Hpy188I TCNGA 4 cut(s) 210, 318, 555, 631
Hpy188III TCNNGA 5 cut(s) 423, 443, 474, 617, 716
Hpy8I GTNNAC 2 cut(s) 31, 148
HpyAV CCTTC 5 cut(s) 131, 171, 282, 363, 744
HpyCH4III ACNGT 6 cut(s) 152, 183, 290, 299, 569, 860
HpyCH4IV ACGT 2 cut(s) 39, 688
HpyCH4V TGCA 6 cut(s) 125, 329, 562, 644, 697, 920
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 2 cut(s) 421, 810
HpySE526I ACGT 2 cut(s) 39, 688
Hsp92I GRCGYC 2 cut(s) 39, 468
Hsp92II CATG 2 cut(s) 98, 741
Kpn2I TCCGGA 1 cut(s) 442
Kzo9I GATC 4 cut(s) 103, 304, 637, 718
LmnI GCTCC 3 cut(s) 178, 226, 770
Lsp1109I GCAGC 4 cut(s) 421, 499, 709, 799
LweI GCATC 1 cut(s) 684
MaeII ACGT 2 cut(s) 39, 688
MaeIII GTNAC 2 cut(s) 293, 370
MalI GATC 4 cut(s) 105, 306, 639, 720
MboI GATC 4 cut(s) 103, 304, 637, 718
MboII GAAGA 6 cut(s) 72, 509, 632, 673, 815, 824
MflI RGATCY 2 cut(s) 304, 718
MhlI GDGCHC 1 cut(s) 346
MluCI AATT 8 cut(s) 76, 187, 438, 612, 625, 791, 903, 932
MlyI GAGTC 1 cut(s) 815
MnlI CCTC 7 cut(s) 53, 92, 204, 361, 423, 481, 487
MroI TCCGGA 1 cut(s) 442
MroXI GAANNNNTTC 1 cut(s) 504
MseI TTAA 1 cut(s) 332
MslI CAYNNNNRTG 1 cut(s) 861
MspA1I CMGCKG 1 cut(s) 700
MspI CCGG 2 cut(s) 443, 602
MspR9I CCNGG 4 cut(s) 259, 363, 588, 723
Mva1269I GAATGC 1 cut(s) 127
MvaI CCWGG 4 cut(s) 259, 363, 588, 723
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeII GATC 4 cut(s) 103, 304, 637, 718
NlaIII CATG 2 cut(s) 98, 741
NlaIV GGNNCC 2 cut(s) 345, 381
NspV TTCGAA 1 cut(s) 74
PceI AGGCCT 1 cut(s) 433
PctI GAATGC 1 cut(s) 127
PdmI GAANNNNTTC 1 cut(s) 504
PfeI GAWTC 3 cut(s) 211, 505, 712
PfoI TCCNGGA 1 cut(s) 721
PkrI GCNGC 4 cut(s) 411, 514, 699, 789
PleI GAGTC 1 cut(s) 814
PpsI GAGTC 1 cut(s) 814
Ppu21I YACGTR 1 cut(s) 689
Psp6I CCWGG 4 cut(s) 257, 361, 586, 721
PspGI CCWGG 4 cut(s) 257, 361, 586, 721
PspN4I GGNNCC 2 cut(s) 345, 381
PsrI GAACNNNNNNTAC 2 cut(s) 363, 395
PsuI RGATCY 2 cut(s) 304, 718
PvuII CAGCTG 1 cut(s) 700
RsaI GTAC 5 cut(s) 147, 154, 185, 571, 736
RsaNI GTAC 5 cut(s) 146, 153, 184, 570, 735
RseI CAYNNNNRTG 1 cut(s) 861
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 4 cut(s) 410, 513, 698, 788
Sau3AI GATC 4 cut(s) 103, 304, 637, 718
ScaI AGTACT 1 cut(s) 571
SchI GAGTC 1 cut(s) 815
ScrFI CCNGG 4 cut(s) 259, 363, 588, 723
SduI GDGCHC 1 cut(s) 346
SfaNI GCATC 1 cut(s) 684
SfcI CTRYAG 1 cut(s) 384
SfuI TTCGAA 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 861
SmlI CTYRAG 3 cut(s) 44, 472, 911
SmoI CTYRAG 3 cut(s) 44, 472, 911
Sse9I AATT 8 cut(s) 76, 187, 438, 612, 625, 791, 903, 932
SseBI AGGCCT 1 cut(s) 433
StuI AGGCCT 1 cut(s) 433
StyD4I CCNGG 4 cut(s) 257, 361, 586, 721
TaaI ACNGT 6 cut(s) 152, 183, 290, 299, 569, 860
TaiI ACGT 2 cut(s) 42, 691
TaqI TCGA 2 cut(s) 68, 74
TasI AATT 8 cut(s) 76, 187, 438, 612, 625, 791, 903, 932
TatI WGTACW 5 cut(s) 145, 152, 183, 569, 734
TfiI GAWTC 3 cut(s) 211, 505, 712
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 1 cut(s) 865
TseI GCWGC 4 cut(s) 409, 512, 697, 787
TspDTI ATGAA 3 cut(s) 126, 153, 264
TspRI CASTG 1 cut(s) 865
XapI RAATTY 4 cut(s) 76, 612, 625, 932
XcmI CCANNNNNNNNNTGG 1 cut(s) 945
XmnI GAANNNNTTC 1 cut(s) 504
ZraI GACGTC 1 cut(s) 40
ZrmI AGTACT 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.