Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019045.1

Orthogroup ID

OG0001428

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3191

Gene Structure 3191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019045.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 502 bp

ttacagtagagatctctacaatcggattggttctgcattaactggtcgggcaccatcaccttcacacccaggagaggtaactggggttcctgtaggtttcaatgccagcaatgagcagccttatctctcaggacagaggcctacaatttcggatgtggcaagaactgacttggacgcctcaagatatggcaatgatgtatctcctggtaatgggcttccggttgagaaaattcctgaagaaaattcagattttgatcgtgcagtttcgttgtccttgaaggttcttaatctgtcatcacagcaaaatggagctgaagttgtagagcagcaattagttagtgaagagtctaagcgtgatggtggtagtcatcttcagcagggaaaactggcaactcacagtgatgagtggggaacgaggtcaaatttggtttacacagtcaatgatattgatgagatccgagcggactgggctgagcatgttttgaagttcccagaaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA_4 UBX UIM

Protein Analysis

166

Amino Acids

18.12

Weight (kDa)

4.77

Isoelectric Point (pI)

38.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00752
fragaria_vesca	FvH4_7g13300 FvH4_7g13300 FvH4_7g13300 FvH4_7g13300 FvH4_7g13300
malus_domestica	MD01G1050500.v1.1
prunus_persica	Prupe.2G156600_v2.0.a1
pyrus_communis	pycom01g07530
rosa_chinensis	RchiOBHm_Chr1g0329331 RchiOBHm_Chr1g0352561 RchiOBHm_Chr3g0481331 RchiOBHm_Chr4g0427171
rosa_laevigata	RLG00000028330
rosa_multiflora	Rmu_sc0000147.1_g000024 Rmu_sc0000911.1_g000033 Rmu_sc0008564.1_g000023 Rmu_sc0008823.1_g000008 Rmu_sc0019045.1_g000001
rosa_roxburghii	Rroxscaffold_4G00302630 Rroxscaffold_7G00169710 Rroxscaffold_7G00203150 Rroxscaffold_7G00213050
rosa_rugosa	Rorug01G0230100 Rorug04G0062700 Rorug04G0062800 Rorug04G0062900
rosa_samantha	Rh1AG202000 Rh1AG243600 Rh1BG214200 Rh1CG186900 Rh1CG226800 Rh1CG227100 Rh1DG240200 Rh2AG182200 Rh2DG188600 Rh3AG242000 Rh3DG289800 Rh4DG117700 Rh4DG164500 Rh6CG130000 Rh6CG255900 Rh7DG285300 Rh7DG364500
rosa_wichuraiana	Rw0G009430 Rw1G017790 Rw1G021300 Rw3G029580 Rw4G002460 Rw4G019570 Rw6G016170 Rw7G038890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	50
AccBSI	CCGCTC	1 cut(s)	462
AciI	CCGC	1 cut(s)	462
AclWI	GGATC	1 cut(s)	449
AcsI	RAATTY	3 cut(s)	229, 242, 422
AcuI	CTGAAG	3 cut(s)	256, 334, 357
AcyI	GRCGYC	1 cut(s)	175
AfiI	CCNNNNNNNGG	2 cut(s)	74, 210
AgsI	TTSAA	3 cut(s)	101, 278, 485
AjnI	CCWGG	2 cut(s)	68, 203
AluBI	AGCT	1 cut(s)	312
AluI	AGCT	1 cut(s)	312
AlwI	GGATC	1 cut(s)	449
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	2 cut(s)	116, 326
ApoI	RAATTY	3 cut(s)	229, 242, 422
AsuHPI	GGTGA	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	128, 338
BccI	CCATC	2 cut(s)	62, 351
BciT130I	CCWGG	2 cut(s)	70, 205
BfmI	CTRYAG	1 cut(s)	91
BglII	AGATCT	1 cut(s)	11
BisI	GCNGC	2 cut(s)	117, 327
BlpI	GCTNAGC	1 cut(s)	472
BlsI	GCNGC	2 cut(s)	118, 328
Bme1390I	CCNGG	2 cut(s)	70, 205
BmiI	GGNNCC	2 cut(s)	52, 88
BmrFI	CCNGG	2 cut(s)	70, 205
BmrI	ACTGGG	2 cut(s)	91, 476
BmuI	ACTGGG	2 cut(s)	91, 476
Bpu1102I	GCTNAGC	1 cut(s)	472
BpuEI	CTTGAG	1 cut(s)	164
BsaBI	GATNNNNATC	1 cut(s)	253
BsaHI	GRCGYC	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	68
BsaWI	WCCGGW	1 cut(s)	218
BsaXI	ACNNNNNCTCC	2 cut(s)	301, 331
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 210
Bse1I	ACTGG	4 cut(s)	47, 86, 391, 471
Bse3DI	GCAATG	2 cut(s)	116, 197
Bse8I	GATNNNNATC	1 cut(s)	253
BseBI	CCWGG	2 cut(s)	70, 205
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	1 cut(s)	158
BseJI	GATNNNNATC	1 cut(s)	253
BseLI	CCNNNNNNNGG	2 cut(s)	74, 210
BseMI	GCAATG	2 cut(s)	116, 197
BseMII	CTCAG	2 cut(s)	142, 463
BseNI	ACTGG	4 cut(s)	47, 86, 391, 471
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	2 cut(s)	128, 338
BsgI	GTGCAG	1 cut(s)	280
BshFI	GGCC	1 cut(s)	140
BshNI	GGYRCC	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	219
BslI	CCNNNNNNNGG	2 cut(s)	74, 210
BsnI	GGCC	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	3 cut(s)	11, 254, 454
Bsp1720I	GCTNAGC	1 cut(s)	472
BspACI	CCGC	1 cut(s)	462
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	2 cut(s)	141, 464
BspLI	GGNNCC	2 cut(s)	52, 88
BspPI	GGATC	1 cut(s)	449
BspT107I	GGYRCC	1 cut(s)	50
BsrBI	CCGCTC	1 cut(s)	462
BsrDI	GCAATG	2 cut(s)	116, 197
BsrI	ACTGG	4 cut(s)	47, 86, 391, 471
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	3 cut(s)	11, 254, 454
BssNI	GRCGYC	1 cut(s)	175
Bst2UI	CCWGG	2 cut(s)	70, 205
Bst4CI	ACNGT	3 cut(s)	6, 399, 437
Bst6I	CTCTTC	1 cut(s)	337
BstACI	GRCGYC	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	3 cut(s)	128, 349, 472
BstF5I	GGATG	1 cut(s)	158
BstKTI	GATC	3 cut(s)	14, 257, 457
BstMBI	GATC	3 cut(s)	11, 254, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	468
BstNI	CCWGG	2 cut(s)	70, 205
BstNSI	RCATGY	1 cut(s)	480
BstSCI	CCNGG	2 cut(s)	68, 203
BstSFI	CTRYAG	1 cut(s)	91
BstSLI	GKGCMC	1 cut(s)	53
BstV1I	GCAGC	2 cut(s)	128, 338
BstX2I	RGATCY	2 cut(s)	11, 454
BstYI	RGATCY	2 cut(s)	11, 454
BsuRI	GGCC	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	404
Cac8I	GCNNGC	1 cut(s)	107
CseI	GACGC	1 cut(s)	183
CviAII	CATG	1 cut(s)	477
CviJI	RGCY	5 cut(s)	119, 140, 215, 312, 471
CviKI_1	RGCY	5 cut(s)	119, 140, 215, 312, 471
DdeI	CTNAG	3 cut(s)	128, 349, 472
DpnI	GATC	3 cut(s)	13, 256, 456
DpnII	GATC	3 cut(s)	11, 254, 454
Eam1104I	CTCTTC	1 cut(s)	337
EarI	CTCTTC	1 cut(s)	337
Eco147I	AGGCCT	1 cut(s)	140
Eco57I	CTGAAG	3 cut(s)	256, 334, 357
EcoRII	CCWGG	2 cut(s)	68, 203
FaeI	CATG	1 cut(s)	480
FaiI	YATR	2 cut(s)	187, 478
FatI	CATG	1 cut(s)	476
Fnu4HI	GCNGC	2 cut(s)	117, 327
FokI	GGATG	1 cut(s)	165
Fsp4HI	GCNGC	2 cut(s)	117, 327
GluI	GCNGC	2 cut(s)	117, 327
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	1 cut(s)	219
HgaI	GACGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	480
HinfI	GANTC	1 cut(s)	345
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	431
Hpy188I	TCNGA	4 cut(s)	25, 152, 248, 459
Hpy188III	TCNNGA	3 cut(s)	130, 181, 234
Hpy8I	GTNNAC	1 cut(s)	431
HpyAV	CCTTC	2 cut(s)	70, 272
HpyCH4III	ACNGT	3 cut(s)	6, 399, 437
HpyCH4V	TGCA	2 cut(s)	36, 261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	468
HpyF3I	CTNAG	3 cut(s)	128, 349, 472
Hsp92I	GRCGYC	1 cut(s)	175
Hsp92II	CATG	1 cut(s)	480
Kzo9I	GATC	3 cut(s)	11, 254, 454
LmnI	GCTCC	1 cut(s)	309
Lsp1109I	GCAGC	2 cut(s)	128, 338
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	3 cut(s)	13, 256, 456
MbiI	CCGCTC	1 cut(s)	462
MboI	GATC	3 cut(s)	11, 254, 454
MboII	GAAGA	3 cut(s)	249, 354, 363
MflI	RGATCY	2 cut(s)	11, 454
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	6 cut(s)	145, 229, 242, 330, 422, 497
MlyI	GAGTC	1 cut(s)	354
MnlI	CCTC	4 cut(s)	68, 130, 188, 409
MseI	TTAA	3 cut(s)	39, 286, 500
MslI	CAYNNNNRTG	1 cut(s)	400
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	2 cut(s)	70, 205
MvaI	CCWGG	2 cut(s)	70, 205
MwoI	GCNNNNNNNGC	1 cut(s)	468
NdeII	GATC	3 cut(s)	11, 254, 454
NlaIII	CATG	1 cut(s)	480
NlaIV	GGNNCC	2 cut(s)	52, 88
NspI	RCATGY	1 cut(s)	480
PceI	AGGCCT	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	118, 328
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
Psp6I	CCWGG	2 cut(s)	68, 203
PspGI	CCWGG	2 cut(s)	68, 203
PspN4I	GGNNCC	2 cut(s)	52, 88
PsrI	GAACNNNNNNTAC	2 cut(s)	70, 102
PsuI	RGATCY	2 cut(s)	11, 454
RseI	CAYNNNNRTG	1 cut(s)	400
SaqAI	TTAA	3 cut(s)	39, 286, 500
SatI	GCNGC	2 cut(s)	117, 327
Sau3AI	GATC	3 cut(s)	11, 254, 454
SchI	GAGTC	1 cut(s)	354
ScrFI	CCNGG	2 cut(s)	70, 205
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	6 cut(s)	62, 79, 98, 283, 314, 420
SfcI	CTRYAG	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	400
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	6 cut(s)	145, 229, 242, 330, 422, 497
SseBI	AGGCCT	1 cut(s)	140
SsiI	CCGC	1 cut(s)	462
StuI	AGGCCT	1 cut(s)	140
StyD4I	CCNGG	2 cut(s)	68, 203
TaaI	ACNGT	3 cut(s)	6, 399, 437
TasI	AATT	6 cut(s)	145, 229, 242, 330, 422, 497
Tru1I	TTAA	3 cut(s)	39, 286, 500
Tru9I	TTAA	3 cut(s)	39, 286, 500
TscAI	CASTG	1 cut(s)	404
TseI	GCWGC	2 cut(s)	116, 326
TspRI	CASTG	1 cut(s)	404
XapI	RAATTY	3 cut(s)	229, 242, 422
XceI	RCATGY	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.