Rh1CG186900

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001428
Physical Location & Seq
Reverse (-)
40817549 .. 40821024
3476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG186900.1

Sequence Viewer

Length: 729 bp
ATGAAGATTGAGATCGTTGGTGAAGAACATGGAGGCGATCTCAATGAAGCCGTGAATGCACATTTTAGGGAAGGAGATGTACACAGTACAAGTCCTTCATCTACTGCTCCCCCACAGTACAATTTCCCTCAAATGAGTAATCAGAATCAAGTAGCTCCACAACAAGGACTTCTGCCACTTCTCTCTGTTGCCAGGAGTTTCAAGCCTTCATTACTACTTGACCGTAGTTACAGTAGAGATCTCTACAATCGGATTGGTTCTGCATTAACTGGTCGTGCACCATCACCTTCACACCCAGGAGAGGTAACTGGGGTTCCTGTAGGTTTCAATGCCAGCAATGAGCAGCCTTATCTCTCAGGACAGAGGCCTACAATTCCGGATGTGGCAAGAACTGACTTGGACGCCTCAAGATATGGCAATGATGTGGAGGAAGAAATGATTCAAGCTGCTATTGAAGCTTCCAAACGAGAAGCTGAAATGGGTTCTCCGAATGTGCAAAACAGTACTCCCAATGTATCTCCTGGTAATGGGCTTCCGGTTGAGAAAATTCCTGAAGAAAATTCAGATTTTGATCGTGCAGTTTCGTTGTCCTTGAAGACAGTAGAACAAGAGAAAGCAATACGTGAGATGCAGCTGAACGACAGGAATCAAGATCTAGGAGTTTATAGTACATGGAAGGTATACCTTCTATTTATGGTAGAGTTGCTCAGTTTCATATACAAATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

242

Amino Acids

26.71

Weight (kDa)

4.86

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 681
AccIII TCCGGA 1 cut(s) 376
AcsI RAATTY 2 cut(s) 546, 559
AcuI CTGAAG 1 cut(s) 573
AcyI GRCGYC 1 cut(s) 402
AfaI GTAC 5 cut(s) 81, 88, 119, 505, 670
AfiI CCNNNNNNNGG 3 cut(s) 164, 301, 527
AgsI TTSAA 5 cut(s) 202, 328, 443, 455, 595
AjnI CCWGG 3 cut(s) 191, 295, 520
AluBI AGCT 5 cut(s) 155, 446, 458, 473, 634
AluI AGCT 5 cut(s) 155, 446, 458, 473, 634
Alw21I GWGCWC 1 cut(s) 280
Alw44I GTGCAC 1 cut(s) 276
Aor13HI TCCGGA 1 cut(s) 376
AoxI GGCC 1 cut(s) 365
ApaLI GTGCAC 1 cut(s) 276
ApeKI GCWGC 3 cut(s) 343, 446, 631
ApoI RAATTY 2 cut(s) 546, 559
Asp700I GAANNNNTTC 1 cut(s) 438
AsuHPI GGTGA 2 cut(s) 32, 276
BaeGI GKGCMC 1 cut(s) 280
BarI GAAGNNNNNNTAC 4 cut(s) 63, 79, 95, 111
BbsI GAAGAC 1 cut(s) 602
Bbv12I GWGCWC 1 cut(s) 280
BbvI GCAGC 3 cut(s) 355, 433, 643
BccI CCATC 1 cut(s) 289
BceAI ACGGC 1 cut(s) 35
BciT130I CCWGG 3 cut(s) 193, 297, 522
BfaI CTAG 1 cut(s) 656
BfmI CTRYAG 1 cut(s) 318
BglII AGATCT 2 cut(s) 238, 652
BisI GCNGC 3 cut(s) 344, 447, 632
BlsI GCNGC 3 cut(s) 345, 448, 633
BmcAI AGTACT 1 cut(s) 505
Bme1390I CCNGG 3 cut(s) 193, 297, 522
BmiI GGNNCC 1 cut(s) 315
BmrFI CCNGG 3 cut(s) 193, 297, 522
BmrI ACTGGG 1 cut(s) 318
BmsI GCATC 1 cut(s) 618
BmuI ACTGGG 1 cut(s) 318
BpiI GAAGAC 1 cut(s) 602
BplI GAGNNNNNCTC 2 cut(s) 24, 56
BpuEI CTTGAG 1 cut(s) 391
BsaAI YACGTR 1 cut(s) 623
BsaBI GATNNNNATC 2 cut(s) 11, 570
BsaHI GRCGYC 1 cut(s) 402
BsaJI CCNNGG 1 cut(s) 295
BsaWI WCCGGW 2 cut(s) 376, 535
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 301, 527
Bse1I ACTGG 2 cut(s) 274, 313
Bse3DI GCAATG 2 cut(s) 343, 424
Bse8I GATNNNNATC 2 cut(s) 11, 570
BseAI TCCGGA 1 cut(s) 376
BseBI CCWGG 3 cut(s) 193, 297, 522
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 1 cut(s) 385
BseJI GATNNNNATC 2 cut(s) 11, 570
BseLI CCNNNNNNNGG 3 cut(s) 164, 301, 527
BseMI GCAATG 2 cut(s) 343, 424
BseMII CTCAG 2 cut(s) 369, 721
BseNI ACTGG 2 cut(s) 274, 313
BseSI GKGCMC 1 cut(s) 280
BseXI GCAGC 3 cut(s) 355, 433, 643
BsgI GTGCAG 1 cut(s) 597
BshFI GGCC 1 cut(s) 367
BsiHKAI GWGCWC 1 cut(s) 280
BsiSI CCGG 2 cut(s) 377, 536
BslI CCNNNNNNNGG 3 cut(s) 164, 301, 527
BsmI GAATGC 1 cut(s) 61
BsnI GGCC 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 280
Bsp13I TCCGGA 1 cut(s) 376
Bsp1407I TGTACA 1 cut(s) 79
Bsp143I GATC 5 cut(s) 12, 37, 238, 571, 652
BspANI GGCC 1 cut(s) 367
BspCNI CTCAG 2 cut(s) 368, 720
BspEI TCCGGA 1 cut(s) 376
BspLI GGNNCC 1 cut(s) 315
BsrDI GCAATG 2 cut(s) 343, 424
BsrGI TGTACA 1 cut(s) 79
BsrI ACTGG 2 cut(s) 274, 313
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 5 cut(s) 12, 37, 238, 571, 652
BssNAI GTATAC 1 cut(s) 682
BssNI GRCGYC 1 cut(s) 402
Bst1107I GTATAC 1 cut(s) 682
Bst2UI CCWGG 3 cut(s) 193, 297, 522
Bst4CI ACNGT 6 cut(s) 86, 117, 224, 233, 503, 601
BstACI GRCGYC 1 cut(s) 402
BstAUI TGTACA 1 cut(s) 79
BstBAI YACGTR 1 cut(s) 623
BstC8I GCNNGC 1 cut(s) 334
BstDEI CTNAG 2 cut(s) 355, 707
BstF5I GGATG 1 cut(s) 385
BstKTI GATC 5 cut(s) 15, 40, 241, 574, 655
BstMBI GATC 5 cut(s) 12, 37, 238, 571, 652
BstMWI GCNNNNNNNGC 2 cut(s) 56, 455
BstNI CCWGG 3 cut(s) 193, 297, 522
BstSCI CCNGG 3 cut(s) 191, 295, 520
BstSFI CTRYAG 1 cut(s) 318
BstSLI GKGCMC 1 cut(s) 280
BstV1I GCAGC 3 cut(s) 355, 433, 643
BstV2I GAAGAC 1 cut(s) 602
BstX2I RGATCY 2 cut(s) 238, 652
BstYI RGATCY 2 cut(s) 238, 652
BstZ17I GTATAC 1 cut(s) 682
BsuRI GGCC 1 cut(s) 367
BtsCI GGATG 1 cut(s) 385
Cac8I GCNNGC 1 cut(s) 334
CseI GACGC 1 cut(s) 410
Csp6I GTAC 5 cut(s) 80, 87, 118, 504, 669
CviAII CATG 2 cut(s) 29, 672
CviQI GTAC 5 cut(s) 80, 87, 118, 504, 669
DdeI CTNAG 2 cut(s) 355, 707
DpnI GATC 5 cut(s) 14, 39, 240, 573, 654
DpnII GATC 5 cut(s) 12, 37, 238, 571, 652
Eco147I AGGCCT 1 cut(s) 367
Eco57I CTGAAG 1 cut(s) 573
EcoRII CCWGG 3 cut(s) 191, 295, 520
FaeI CATG 2 cut(s) 32, 675
FaiI YATR 8 cut(s) 30, 414, 666, 673, 682, 695, 716, 718
FatI CATG 2 cut(s) 28, 671
FblI GTMKAC 1 cut(s) 681
Fnu4HI GCNGC 3 cut(s) 344, 447, 632
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 3 cut(s) 344, 447, 632
FspBI CTAG 1 cut(s) 656
GluI GCNGC 3 cut(s) 344, 447, 632
HaeIII GGCC 1 cut(s) 367
HapII CCGG 2 cut(s) 377, 536
HgaI GACGC 1 cut(s) 410
Hin1I GRCGYC 1 cut(s) 402
Hin1II CATG 2 cut(s) 32, 675
HindIII AAGCTT 1 cut(s) 456
HinfI GANTC 3 cut(s) 145, 439, 646
HpaII CCGG 2 cut(s) 377, 536
HphI GGTGA 2 cut(s) 32, 276
Hpy166II GTNNAC 3 cut(s) 82, 278, 682
Hpy188I TCNGA 4 cut(s) 144, 252, 489, 565
Hpy188III TCNNGA 5 cut(s) 357, 377, 408, 551, 650
Hpy8I GTNNAC 3 cut(s) 82, 278, 682
HpyAV CCTTC 6 cut(s) 65, 105, 216, 297, 670, 695
HpyCH4III ACNGT 6 cut(s) 86, 117, 224, 233, 503, 601
HpyCH4IV ACGT 1 cut(s) 622
HpyCH4V TGCA 6 cut(s) 59, 263, 278, 496, 578, 631
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 455
HpyF3I CTNAG 2 cut(s) 355, 707
HpySE526I ACGT 1 cut(s) 622
Hsp92I GRCGYC 1 cut(s) 402
Hsp92II CATG 2 cut(s) 32, 675
Kpn2I TCCGGA 1 cut(s) 376
Kzo9I GATC 5 cut(s) 12, 37, 238, 571, 652
LmnI GCTCC 2 cut(s) 112, 160
Lsp1109I GCAGC 3 cut(s) 355, 433, 643
LweI GCATC 1 cut(s) 618
MaeI CTAG 1 cut(s) 656
MaeII ACGT 1 cut(s) 622
MaeIII GTNAC 2 cut(s) 227, 304
MalI GATC 5 cut(s) 14, 39, 240, 573, 654
MboI GATC 5 cut(s) 12, 37, 238, 571, 652
MboII GAAGA 5 cut(s) 16, 35, 443, 566, 607
MflI RGATCY 2 cut(s) 238, 652
MhlI GDGCHC 1 cut(s) 280
MluCI AATT 4 cut(s) 121, 372, 546, 559
MnlI CCTC 6 cut(s) 26, 138, 295, 357, 415, 421
MroI TCCGGA 1 cut(s) 376
MroXI GAANNNNTTC 1 cut(s) 438
MseI TTAA 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 634
MspI CCGG 2 cut(s) 377, 536
MspR9I CCNGG 3 cut(s) 193, 297, 522
Mva1269I GAATGC 1 cut(s) 61
MvaI CCWGG 3 cut(s) 193, 297, 522
MwoI GCNNNNNNNGC 2 cut(s) 56, 455
NdeII GATC 5 cut(s) 12, 37, 238, 571, 652
NlaIII CATG 2 cut(s) 32, 675
NlaIV GGNNCC 1 cut(s) 315
PceI AGGCCT 1 cut(s) 367
PctI GAATGC 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 3 cut(s) 145, 439, 646
PkrI GCNGC 3 cut(s) 345, 448, 633
Ppu21I YACGTR 1 cut(s) 623
Psp6I CCWGG 3 cut(s) 191, 295, 520
PspGI CCWGG 3 cut(s) 191, 295, 520
PspN4I GGNNCC 1 cut(s) 315
PsrI GAACNNNNNNTAC 2 cut(s) 297, 329
PsuI RGATCY 2 cut(s) 238, 652
PvuII CAGCTG 1 cut(s) 634
RsaI GTAC 5 cut(s) 81, 88, 119, 505, 670
RsaNI GTAC 5 cut(s) 80, 87, 118, 504, 669
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 3 cut(s) 344, 447, 632
Sau3AI GATC 5 cut(s) 12, 37, 238, 571, 652
ScaI AGTACT 1 cut(s) 505
ScrFI CCNGG 3 cut(s) 193, 297, 522
SduI GDGCHC 1 cut(s) 280
SfaNI GCATC 1 cut(s) 618
SfcI CTRYAG 1 cut(s) 318
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
Sse9I AATT 4 cut(s) 121, 372, 546, 559
SseBI AGGCCT 1 cut(s) 367
SspI AATATT 1 cut(s) 725
SspMI CTAG 1 cut(s) 656
StuI AGGCCT 1 cut(s) 367
StyD4I CCNGG 3 cut(s) 191, 295, 520
TaaI ACNGT 6 cut(s) 86, 117, 224, 233, 503, 601
TaiI ACGT 1 cut(s) 625
TasI AATT 4 cut(s) 121, 372, 546, 559
TatI WGTACW 5 cut(s) 79, 86, 117, 503, 668
TfiI GAWTC 3 cut(s) 145, 439, 646
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TseI GCWGC 3 cut(s) 343, 446, 631
TspDTI ATGAA 5 cut(s) 17, 60, 87, 198, 703
VneI GTGCAC 1 cut(s) 276
XapI RAATTY 2 cut(s) 546, 559
XmiI GTMKAC 1 cut(s) 681
XmnI GAANNNNTTC 1 cut(s) 438
XspI CTAG 1 cut(s) 656
ZrmI AGTACT 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.