Rw6G016170

UBA-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001428
Physical Location & Seq
Forward (+)
31568606 .. 31573421
4816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G016170.1

Sequence Viewer

Length: 849 bp
ATGATTTCAGACGTGCACGATTTGGAATCTCCCGGTAATGGGCATCCGGTTGAGAAAATTCCTGAAGAAAATTCAGATTTTGATCGTGGAGTTTCGTTGTCCTTGAAGACAACAGAACAAGAGAAAGCAATACGTGAGATGCAGCTGAACGACAGGAATCAAGATCCAGGAGTTTATAGTACACGGAAGCAAGGAAGGTCATCACAGCAAAATGGAGCTGAAGTTGTAGAGCAGCAATTAGTTAGTGAAGAGTCTAAGCGTGATGGTGGTAGTCATCTTCAGCAGGGAAAACTGGCAGCTCACAGTGATGAGTTGGGAAGCTTATCTCCAAAAGAGCTTGATGAAGCAATTATGCTTGAGACTGCACTTTTTGGTAAATCTCCATACACTCCTAACAATCTGCCTATACATGGCTCTTCCTCATCCTCTCTATCAGCAAGGCAATTGCTCAGAGAACAACAGGATGATGAGTATCTTGCATCCCACTTAGCTGATAAAGAGAAAGAAATGAATGTTGTCCATGAAGCTGCAACTTGTCAGTTGAAAGGAGATGTCAACAAAAGAATCAAGCCAATGGAATTTGAGAGAAGGCTAGATGGAAAAAGTGCTTCACTTCCTTGTGAACCAGCACCAGATGATGAGAATGCTGTGACTCTTCTTGTTCGGATGCCAAAAGGCAGCCGCCTTAGCCGTCGCTTTCGCAAATCTGACAGGCTTCAGATGGCGTCATGCCCTCTAGTTTTAGGGACATCAATCCTTGTAGGTACGTTTGCAGCAGATCGAGAATTCTCCGTACTTCAATTTTGGACTGTGCGGTTCGGGGATCAAGATGAGAGAAAGTGGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX UIM

Protein Analysis

282

Amino Acids

31.46

Weight (kDa)

5.4

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 682, 814
AclWI GGATC 2 cut(s) 158, 831
AcsI RAATTY 4 cut(s) 57, 70, 578, 785
AcuI CTGAAG 4 cut(s) 84, 240, 263, 701
AcyI GRCGYC 1 cut(s) 725
AfaI GTAC 3 cut(s) 181, 766, 795
AfiI CCNNNNNNNGG 3 cut(s) 38, 39, 410
AgsI TTSAA 3 cut(s) 106, 544, 800
AjiI CACGTC 1 cut(s) 13
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 7 cut(s) 145, 218, 299, 321, 337, 491, 527
AluI AGCT 7 cut(s) 145, 218, 299, 321, 337, 491, 527
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 1 cut(s) 353
Alw44I GTGCAC 1 cut(s) 14
AlwI GGATC 2 cut(s) 158, 831
ApaLI GTGCAC 1 cut(s) 14
ApeKI GCWGC 6 cut(s) 142, 232, 296, 527, 678, 773
ApoI RAATTY 4 cut(s) 57, 70, 578, 785
AsuC2I CCSGG 1 cut(s) 33
BaeGI GKGCMC 1 cut(s) 18
BbsI GAAGAC 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 6 cut(s) 154, 244, 308, 514, 690, 785
BccI CCATC 3 cut(s) 257, 590, 715
BceAI ACGGC 1 cut(s) 675
BciT130I CCWGG 1 cut(s) 168
BcnI CCSGG 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 2 cut(s) 593, 737
BisI GCNGC 7 cut(s) 143, 233, 297, 528, 679, 682, 774
BlsI GCNGC 7 cut(s) 144, 234, 298, 529, 680, 683, 775
Bme1390I CCNGG 2 cut(s) 33, 168
BmgBI CACGTC 1 cut(s) 13
BmrFI CCNGG 2 cut(s) 33, 168
BmsI GCATC 4 cut(s) 52, 129, 488, 657
BpiI GAAGAC 1 cut(s) 113
Bpu10I CCTNAGC 1 cut(s) 686
BpuEI CTTGAG 1 cut(s) 377
BpuMI CCSGG 1 cut(s) 33
BsaAI YACGTR 1 cut(s) 134
BsaBI GATNNNNATC 2 cut(s) 81, 471
BsaHI GRCGYC 1 cut(s) 725
BsaWI WCCGGW 1 cut(s) 46
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 39, 410
Bse1I ACTGG 1 cut(s) 297
Bse8I GATNNNNATC 2 cut(s) 81, 471
BseBI CCWGG 1 cut(s) 168
BseGI GGATG 5 cut(s) 43, 422, 469, 479, 672
BseJI GATNNNNATC 2 cut(s) 81, 471
BseLI CCNNNNNNNGG 3 cut(s) 38, 39, 410
BseMII CTCAG 1 cut(s) 463
BseNI ACTGG 1 cut(s) 297
BseSI GKGCMC 1 cut(s) 18
BseXI GCAGC 6 cut(s) 154, 244, 308, 514, 690, 785
BsgI GTGCAG 1 cut(s) 348
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 2 cut(s) 33, 47
BslFI GGGAC 1 cut(s) 760
BslI CCNNNNNNNGG 3 cut(s) 38, 39, 410
BsmAI GTCTC 1 cut(s) 353
BsmFI GGGAC 1 cut(s) 760
BsmI GAATGC 1 cut(s) 649
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 4 cut(s) 82, 163, 778, 823
BspACI CCGC 2 cut(s) 682, 814
BspCNI CTCAG 1 cut(s) 462
BspPI GGATC 2 cut(s) 158, 831
BspQI GCTCTTC 1 cut(s) 421
BsrI ACTGG 1 cut(s) 297
BssMI GATC 4 cut(s) 82, 163, 778, 823
BssNI GRCGYC 1 cut(s) 725
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 2 cut(s) 305, 811
Bst6I CTCTTC 3 cut(s) 243, 421, 660
BstACI GRCGYC 1 cut(s) 725
BstBAI YACGTR 1 cut(s) 134
BstDEI CTNAG 4 cut(s) 255, 449, 487, 686
BstF5I GGATG 5 cut(s) 43, 422, 469, 479, 672
BstKTI GATC 4 cut(s) 85, 166, 781, 826
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 4 cut(s) 82, 163, 778, 823
BstMWI GCNNNNNNNGC 1 cut(s) 687
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 2 cut(s) 31, 166
BstSLI GKGCMC 1 cut(s) 18
BstV1I GCAGC 6 cut(s) 154, 244, 308, 514, 690, 785
BstV2I GAAGAC 1 cut(s) 113
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BtrI CACGTC 1 cut(s) 13
BtsCI GGATG 5 cut(s) 43, 422, 469, 479, 672
BtsIMutI CAGTG 1 cut(s) 310
CseI GACGC 1 cut(s) 714
Csp6I GTAC 3 cut(s) 180, 765, 794
CviAII CATG 3 cut(s) 410, 521, 729
CviQI GTAC 3 cut(s) 180, 765, 794
DdeI CTNAG 4 cut(s) 255, 449, 487, 686
DpnI GATC 4 cut(s) 84, 165, 780, 825
DpnII GATC 4 cut(s) 82, 163, 778, 823
Eam1104I CTCTTC 3 cut(s) 243, 421, 660
EarI CTCTTC 3 cut(s) 243, 421, 660
Eco57I CTGAAG 4 cut(s) 84, 240, 263, 701
EcoRI GAATTC 1 cut(s) 785
EcoRII CCWGG 1 cut(s) 166
FaeI CATG 3 cut(s) 413, 524, 732
FaiI YATR 7 cut(s) 177, 353, 385, 407, 411, 522, 730
FaqI GGGAC 1 cut(s) 760
FatI CATG 3 cut(s) 409, 520, 728
Fnu4HI GCNGC 7 cut(s) 143, 233, 297, 528, 679, 682, 774
FokI GGATG 5 cut(s) 30, 409, 466, 476, 679
Fsp4HI GCNGC 7 cut(s) 143, 233, 297, 528, 679, 682, 774
FspBI CTAG 2 cut(s) 593, 737
GluI GCNGC 7 cut(s) 143, 233, 297, 528, 679, 682, 774
HapII CCGG 2 cut(s) 33, 47
HgaI GACGC 1 cut(s) 714
Hin1I GRCGYC 1 cut(s) 725
Hin1II CATG 3 cut(s) 413, 524, 732
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HindIII AAGCTT 1 cut(s) 319
HinfI GANTC 5 cut(s) 26, 157, 251, 564, 652
HpaII CCGG 2 cut(s) 33, 47
Hpy166II GTNNAC 4 cut(s) 16, 182, 556, 623
Hpy188I TCNGA 6 cut(s) 10, 76, 452, 666, 709, 720
Hpy188III TCNNGA 4 cut(s) 62, 161, 782, 827
Hpy8I GTNNAC 4 cut(s) 16, 182, 556, 623
Hpy99I CGWCG 1 cut(s) 696
HpyAV CCTTC 2 cut(s) 189, 582
HpyCH4III ACNGT 2 cut(s) 305, 811
HpyCH4IV ACGT 3 cut(s) 12, 133, 767
HpyCH4V TGCA 6 cut(s) 16, 142, 365, 479, 530, 773
HpyF10VI GCNNNNNNNGC 1 cut(s) 687
HpyF3I CTNAG 4 cut(s) 255, 449, 487, 686
HpySE526I ACGT 3 cut(s) 12, 133, 767
Hsp92I GRCGYC 1 cut(s) 725
Hsp92II CATG 3 cut(s) 413, 524, 732
Kzo9I GATC 4 cut(s) 82, 163, 778, 823
LguI GCTCTTC 1 cut(s) 421
LmnI GCTCC 1 cut(s) 215
Lsp1109I GCAGC 6 cut(s) 154, 244, 308, 514, 690, 785
LweI GCATC 4 cut(s) 52, 129, 488, 657
MaeI CTAG 2 cut(s) 593, 737
MaeII ACGT 3 cut(s) 12, 133, 767
MaeIII GTNAC 1 cut(s) 649
MalI GATC 4 cut(s) 84, 165, 780, 825
MboI GATC 4 cut(s) 82, 163, 778, 823
MboII GAAGA 6 cut(s) 77, 118, 260, 269, 408, 647
MfeI CAATTG 1 cut(s) 443
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 8 cut(s) 57, 70, 236, 348, 443, 578, 785, 800
MlyI GAGTC 2 cut(s) 260, 646
MnlI CCTC 3 cut(s) 430, 436, 744
MslI CAYNNNNRTG 1 cut(s) 306
MspA1I CMGCKG 1 cut(s) 145
MspI CCGG 2 cut(s) 33, 47
MspR9I CCNGG 2 cut(s) 33, 168
MunI CAATTG 1 cut(s) 443
Mva1269I GAATGC 1 cut(s) 649
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 687
NciI CCSGG 1 cut(s) 33
NdeII GATC 4 cut(s) 82, 163, 778, 823
NlaIII CATG 3 cut(s) 413, 524, 732
NmuCI GTSAC 1 cut(s) 649
PciSI GCTCTTC 1 cut(s) 421
PctI GAATGC 1 cut(s) 649
PfeI GAWTC 3 cut(s) 26, 157, 564
PfoI TCCNGGA 1 cut(s) 166
PkrI GCNGC 7 cut(s) 144, 234, 298, 529, 680, 683, 775
PleI GAGTC 2 cut(s) 259, 646
PpsI GAGTC 2 cut(s) 259, 646
Ppu21I YACGTR 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PsuI RGATCY 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 145
RsaI GTAC 3 cut(s) 181, 766, 795
RsaNI GTAC 3 cut(s) 180, 765, 794
RseI CAYNNNNRTG 1 cut(s) 306
SapI GCTCTTC 1 cut(s) 421
SatI GCNGC 7 cut(s) 143, 233, 297, 528, 679, 682, 774
Sau3AI GATC 4 cut(s) 82, 163, 778, 823
SchI GAGTC 2 cut(s) 260, 646
ScrFI CCNGG 2 cut(s) 33, 168
SduI GDGCHC 1 cut(s) 18
SfaNI GCATC 4 cut(s) 52, 129, 488, 657
SmiMI CAYNNNNRTG 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 8 cut(s) 57, 70, 236, 348, 443, 578, 785, 800
SsiI CCGC 2 cut(s) 682, 814
SspMI CTAG 2 cut(s) 593, 737
StyD4I CCNGG 2 cut(s) 31, 166
TaaI ACNGT 2 cut(s) 305, 811
TaiI ACGT 3 cut(s) 15, 136, 770
TaqI TCGA 1 cut(s) 781
TasI AATT 8 cut(s) 57, 70, 236, 348, 443, 578, 785, 800
TatI WGTACW 1 cut(s) 179
TauI GCSGC 1 cut(s) 684
TfiI GAWTC 3 cut(s) 26, 157, 564
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 6 cut(s) 142, 232, 296, 527, 678, 773
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 3 cut(s) 357, 524, 537
TspGWI ACGGA 2 cut(s) 199, 781
TspRI CASTG 1 cut(s) 310
VneI GTGCAC 1 cut(s) 14
XapI RAATTY 4 cut(s) 57, 70, 578, 785
XspI CTAG 2 cut(s) 593, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.